LOCUS       XM_031791531            2139 bp    mRNA    linear   VRT 09-DEC-2019
DEFINITION  PREDICTED: Oncorhynchus kisutch butyrophilin subfamily 3 member
            A2-like (LOC109886139), transcript variant X12, mRNA.
ACCESSION   XM_031791531
VERSION     XM_031791531.1
DBLINK      BioProject: PRJNA378663
KEYWORDS    RefSeq.
SOURCE      Oncorhynchus kisutch (coho salmon)
  ORGANISM  Oncorhynchus kisutch
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii;
            Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_034189.2) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Oncorhynchus kisutch Annotation
                                           Release 101
            Annotation Version          :: 101
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2139
                     /organism="Oncorhynchus kisutch"
                     /mol_type="mRNA"
                     /isolate="150728-3"
                     /db_xref="taxon:8019"
                     /sex="female"
                     /tissue_type="muscle"
                     /dev_stage="juvenile"
                     /geo_loc_name="Canada: Vancouver"
                     /linkage_group="LG16"
                     /note="double haploid"
     gene            1..2139
                     /gene="LOC109886139"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 4 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:109886139"
     CDS             208..2004
                     /gene="LOC109886139"
                     /codon_start=1
                     /product="butyrophilin subfamily 3 member A2-like isoform
                     X12"
                     /protein_id="XP_031647391.1"
                     /db_xref="GeneID:109886139"
                     /translation="

MKTFPTSAVWCFGILFISASLITTGSSEVQVVGPADRVDALAGDDIILPCSLKPNISAKDMLVQWTGLYLKTRNVHLYRQGRDSNEDQFPSYRGRTSMFHEELKNGNVSLKLTRVTLSDAGSYRCFLPTLTSQVKETTVQLFVGAVSQPVISIVGTKDWGVVLKCESGGWFPEPEMEWLDSSGTILPADGPPERHRDSEDLYALRRHVTVDQTDTNRFTCRVHQTEINHLKETEIHVPDDVFPKSHVGLIIGLSILLAVVVLAASAGVYKWRKHTDKVTRERDGLKGELMELREENNKLKIETDNVKMEREELREENNKLKIETDNVKMEREKFRKDNDKLKIETDNVKMEREELREENNKLKIETDNVKMEREKFRKDNDKLKIETDNVKMEREKFRKDNDKLKIETDNVKMEREKFRKDNDKLKIETDNVKMEREKFRKDNDNVKMEREKFRKDNDKLKIETDNVKMEREELREENNKLKIETDNVKMEREELREENNKLKIETDNVKMEREELREENNKLKIETDNVKMEREELREENKKLKKDKGKLKRPSNPIQSPPLQEVNRKQTPSQKSEGIEGMKLESFPAPEMETLPEG"

     misc_feature    295..636
                     /gene="LOC109886139"
                     /note="Immunoglobulin domain; Region: Ig; cl11960"
                     /db_xref="CDD:472250"
     misc_feature    343..357
                     /gene="LOC109886139"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    391..411
                     /gene="LOC109886139"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    529..543
                     /gene="LOC109886139"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    571..588
                     /gene="LOC109886139"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    613..624
                     /gene="LOC109886139"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409353"
     misc_feature    670..915
                     /gene="LOC109886139"
                     /note="Immunoglobulin domain; Region: Ig; cl11960"
                     /db_xref="CDD:472250"
     misc_feature    688..702
                     /gene="LOC109886139"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    730..741
                     /gene="LOC109886139"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    823..837
                     /gene="LOC109886139"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    856..873
                     /gene="LOC109886139"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    <1021..>1830
                     /gene="LOC109886139"
                     /note="Synaptonemal complex protein 1 (SCP-1); Region:
                     SCP-1; pfam05483"
                     /db_xref="CDD:114219"
ORIGIN      

agaagtactgtaagtgaaagtgaaagtaaagtgtgaaactccaccacccttttcctccgttatttctggaacagacgtcgtgttacattctgtgcgttgccaaattagcctttcaactgttttggtttatgtttctaaactcctaataattttattcaccagttacaaacagctttaccttggagtcagacttgttttgttagtgaaatgaagacctttccgacctcggcggtctggtgttttgggattctgttcatcagtgcttcattgataacgacagggtcgtctgaggttcaggttgttggaccggctgaccgagttgatgccttagctggtgatgacatcattctaccatgttccctgaaacccaatattagtgctaaggacatgctagtgcagtggacaggattgtacctgaaaacaagaaacgtccatctttatcgtcaaggtcgagactccaatgaggatcagtttccatcctacaggggaaggacatcaatgtttcatgaagaactgaagaacggcaacgtctccttaaagctgaccagagttactctctctgatgctggaagctacaggtgcttccttccaacactgaccagccaggtgaaggaaaccactgttcaactctttgttggtgctgtatctcagccagtgatctctattgttggaactaaagactggggggtggtcctgaagtgtgagtctggaggctggtttcctgaacctgagatggagtggctggacagttctggaaccatcctccctgctgatggacctccagagagacacagggactcagaggacctctacgctctgagacgacatgtcactgtggaccagactgacaccaacaggttcacctgtagagttcaccagacggagatcaatcacctgaaggagacagagattcatgtcccagatgacgtgtttcctaaatcacacgtagggttgattattggtctgtcaatactattagctgttgtagttctcgcagcttcagctggtgtctacaagtggagaaaacatacagacaaggtcacaagagagagggatggactcaaaggagagctgatggagctcagagaagagaacaacaagctcaaaatagagactgacaacgtcaaaatggagagggaggagctcagagaagagaacaacaagctcaaaatagagactgacaacgtcaaaatggagagggagaagttcagaaaagacaacgacaagctcaaaatagagactgacaacgtcaaaatggagagggaggagctcagagaagagaacaacaagctcaaaatagagactgacaacgtcaaaatggagagggagaagttcagaaaagacaacgacaagctcaaaatagagactgacaacgtcaaaatggagagggagaagttcagaaaagacaacgacaagctcaaaatagagactgacaacgtcaaaatggagagggagaagttcagaaaagacaacgacaagctcaaaatagagactgacaacgtcaaaatggagagggagaagttcagaaaagacaacgacaacgtcaaaatggagagggagaagttcagaaaagacaacgacaagctcaaaatagagactgacaacgtcaaaatggagagggaggagctcagagaagagaacaacaagctcaaaatagagactgacaacgtcaaaatggagagggaggagctcagagaagagaacaacaagctcaaaatagagactgacaacgtcaaaatggagagggaggagctcagagaagagaacaacaagctcaaaatagagactgacaacgtcaaaatggagagggaggagctcagagaagagaacaagaagctgaaaaaagacaaaggaaagctgaagagaccatccaatccaatccaatctccacctctccaggaggtcaacaggaaacagactccttcccaaaagtctgaggggattgaagggatgaagctggagtcttttcctgctcctgagatggagactttacctgaaggatgatctggagaagttgtgggtggaagttgagtttctatagagctgagttactatagagagactataactatagagctgagttactatagagagactataactatagagagactataactatagagagactataactat

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