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2024-03-29 01:08:32, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_031773100             719 bp    mRNA    linear   INV 02-DEC-2019
DEFINITION  PREDICTED: Contarinia nasturtii odorant receptor coreceptor-like
            (LOC116344513), mRNA.
ACCESSION   XM_031773100
VERSION     XM_031773100.1
DBLINK      BioProject: PRJNA579966
KEYWORDS    RefSeq.
SOURCE      Contarinia nasturtii (swede midge)
  ORGANISM  Contarinia nasturtii
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
            Pterygota; Neoptera; Endopterygota; Diptera; Nematocera;
            Sciaroidea; Cecidomyiidae; Contarinia.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_022198383.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Contarinia nasturtii Annotation
                                           Release 100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..719
                     /organism="Contarinia nasturtii"
                     /mol_type="mRNA"
                     /isolate="CC-2019"
                     /isolation_source="Lab colony"
                     /host="Brassica napus"
                     /db_xref="taxon:265458"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="Whole Pupae"
                     /dev_stage="Pupae"
                     /country="Canada: Saskatoon"
                     /collection_date="2018-11-06"
     gene            1..719
                     /gene="LOC116344513"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116344513"
     CDS             211..564
                     /gene="LOC116344513"
                     /codon_start=1
                     /product="odorant receptor coreceptor-like"
                     /protein_id="XP_031628960.1"
                     /db_xref="GeneID:116344513"
                     /translation="
MSITSCLWQISKAILLGEIIEALHMLMMLCIHSQSLLAFCYFGELVTGNIDDVNDMFWQCDWYYLPIKIQQLMPIILMNSEKTIYIGECAGLNASLDVFGKIIKAAVSYLTILRQFD"
     misc_feature    <250..531
                     /gene="LOC116344513"
                     /note="7tm Odorant receptor; Region: 7tm_6; pfam02949"
                     /db_xref="CDD:251636"
ORIGIN      
tgctatctccttgtttcgtttgttatcgatatcaaggaaagtttggatcaattcaattgtctcattaatacgaaagataggagcaatcgaatcaagattaaacaacaaatatgcgagattattcaatttcatgcagactccaggcaacttgcctatgatctatccggtgcatacagaaaacaaatttttctatatttctcaatttcggcaatgtctataaccagttgcttgtggcaaatcagtaaggcaattttattgggggaaataatcgaagcacttcatatgctaatgatgctgtgcatccattcgcaatctcttcttgcgttttgttactttggggaactagtgaccggaaacattgacgatgtgaatgacatgttttggcagtgtgattggtactatttaccgattaaaattcaacaacttatgccgatcatattaatgaattccgaaaaaacaatttacattggagaatgtgctggacttaatgcatctcttgatgtgtttggcaaaattattaaagctgctgtttcttacttgacaatattgcgacaatttgattgaatttaaatattattaatctagtgcaaggcgatacatgtgatgtccgaagtaaatttcgaaacaaaaattaatacaaagcaactctataacgttgtttcttctggggccgaaaattaggttgggtgttgcttatagttgcaattggatagaattta
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]