2024-03-29 01:08:32, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_031773100 719 bp mRNA linear INV 02-DEC-2019 DEFINITION PREDICTED: Contarinia nasturtii odorant receptor coreceptor-like (LOC116344513), mRNA. ACCESSION XM_031773100 VERSION XM_031773100.1 DBLINK BioProject: PRJNA579966 KEYWORDS RefSeq. SOURCE Contarinia nasturtii (swede midge) ORGANISM Contarinia nasturtii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Nematocera; Sciaroidea; Cecidomyiidae; Contarinia. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_022198383.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Contarinia nasturtii Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.3 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..719 /organism="Contarinia nasturtii" /mol_type="mRNA" /isolate="CC-2019" /isolation_source="Lab colony" /host="Brassica napus" /db_xref="taxon:265458" /chromosome="Unknown" /sex="female" /tissue_type="Whole Pupae" /dev_stage="Pupae" /country="Canada: Saskatoon" /collection_date="2018-11-06" gene 1..719 /gene="LOC116344513" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments" /db_xref="GeneID:116344513" CDS 211..564 /gene="LOC116344513" /codon_start=1 /product="odorant receptor coreceptor-like" /protein_id="XP_031628960.1" /db_xref="GeneID:116344513" /translation="
MSITSCLWQISKAILLGEIIEALHMLMMLCIHSQSLLAFCYFGELVTGNIDDVNDMFWQCDWYYLPIKIQQLMPIILMNSEKTIYIGECAGLNASLDVFGKIIKAAVSYLTILRQFD"
misc_feature <250..531 /gene="LOC116344513" /note="7tm Odorant receptor; Region: 7tm_6; pfam02949" /db_xref="CDD:251636" ORIGIN
tgctatctccttgtttcgtttgttatcgatatcaaggaaagtttggatcaattcaattgtctcattaatacgaaagataggagcaatcgaatcaagattaaacaacaaatatgcgagattattcaatttcatgcagactccaggcaacttgcctatgatctatccggtgcatacagaaaacaaatttttctatatttctcaatttcggcaatgtctataaccagttgcttgtggcaaatcagtaaggcaattttattgggggaaataatcgaagcacttcatatgctaatgatgctgtgcatccattcgcaatctcttcttgcgttttgttactttggggaactagtgaccggaaacattgacgatgtgaatgacatgttttggcagtgtgattggtactatttaccgattaaaattcaacaacttatgccgatcatattaatgaattccgaaaaaacaatttacattggagaatgtgctggacttaatgcatctcttgatgtgtttggcaaaattattaaagctgctgtttcttacttgacaatattgcgacaatttgattgaatttaaatattattaatctagtgcaaggcgatacatgtgatgtccgaagtaaatttcgaaacaaaaattaatacaaagcaactctataacgttgtttcttctggggccgaaaattaggttgggtgttgcttatagttgcaattggatagaattta
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@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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