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2020-03-31 05:19:53, GGRNA.v2 : RefSeq release 99 (Mar, 2020)

LOCUS       XM_031697703            5343 bp    mRNA    linear   INV 25-NOV-2019
DEFINITION  PREDICTED: Actinia tenebrosa copper-transporting ATPase 1-like
            (LOC116290626), transcript variant X2, mRNA.
ACCESSION   XM_031697703
VERSION     XM_031697703.1
DBLINK      BioProject: PRJNA590223
KEYWORDS    RefSeq.
SOURCE      Actinia tenebrosa (Australian red waratah sea anemone)
  ORGANISM  Actinia tenebrosa
            Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria;
            Actiniidae; Actinia.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_022258947.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Actinia tenebrosa Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.2
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5343
                     /organism="Actinia tenebrosa"
                     /mol_type="mRNA"
                     /isolation_source="Intertidal zone"
                     /specimen_voucher="ECE2019"
                     /db_xref="taxon:6105"
                     /chromosome="Unknown"
                     /tissue_type="tentacle, column"
                     /dev_stage="adult"
                     /country="Australia: Point Cartwright, Queensland"
                     /collection_date="05-Sep-2015"
     gene            1..5343
                     /gene="LOC116290626"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 11 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116290626"
     CDS             210..4118
                     /gene="LOC116290626"
                     /codon_start=1
                     /product="copper-transporting ATPase 1-like isoform X2"
                     /protein_id="XP_031553563.1"
                     /db_xref="GeneID:116290626"
                     /translation="
MTCNSCVKTIEKTISQMNGVNEINVSLEEKEAQIKFNGKATNGELLTQAIEDVGFEATLQRVVDILTKENAYQKEKETSEGISEIDLKVLGMTCQSCVKSIQKALSHTSGVKNSNISLQEEKATIKYDASITTPEKLQEVIEDIGFEAILPKENSGLRNVMINVEGMTCNSCVNTIEAKIGQKNGVQSISVSLEKKQVQISYTAEKMTPEQLVEAIENMGFEAHLLNDGVNDDDKDIRMAVIAIAGMTCMSCVKTVEGKMSTVPGVINIKVSLDLRKADIKYDPEVTTPQDLCSVIDDMGFDASLPSKDTDSASKDSFVAMATQEGEGNWGIRFSSATNLAPRSKMEDIEKIYLHIEGMTCASCVASIERALMKKKGVKSVLVGLLAQKAEVKFAKGAISPDVIVCHVNEMGFVCELMDKKGQGENTVNILITGMTCSSCVHLIESTLIKRPGILNASVALATSSGRFVYDTEMTGPRDIIEAIEGLGFSASLSSGDKNKDKIDHSASIKKWRRSFLFSLIFGFPVFCIFITYVILDELGKRPRNNVLPGLSLENLLMFILCTPVQFLGGRHFYVTAFKALKHGTTNMDVLIMLATTIAYVYSIIVVAVAMSEQSVNSPMTFFDTPPMLLVFISMGRWMEYVAKGKTSEALAKLLSLQPADAVMVKLAPGTLNVIEEKVITVDLVQRGDILKVVPGAKIPVDGRVIQGTSMADESLITGESMPVPKKIGDSVIGGTINQNGSILVEATHVGQDTTLSQICKLVQEAQTSKAPIQKFADKLSGYFVPVVVLISVLTLIVWLVMGYVNIKLLHKKFDPKADNKDEFIIGFAFQISITVLAIACPCALGLATPTAVMVGTGIGAQNGILIKGGEPLETAHKVTAVVFDKTGTITHGTPEVIKTALFVNPDVCSLPLLLAVAGTAENNSEHPLGVAVTKYAKKELNTETLGQCTGFEAVPGYGLSCTVTDVDGLLNVRVKNEQNIDVIIDGKVTDTLRDVSLNEEDSPPNLDSASTSNYKVLIGNRDWMQMNGLVVTDEIEEAMQTHELKGQTAVLIAIDGKLVAMMAVADTVKSEAQATVATLKRMGIRVVLLTGDNKKTAMAIASQVGIQQVFAEVLPSHKVAKIKSLQERGFITAMVGDGINDSPALAQAHVGIAIGTGTDVAVEAADIVLIKNDLMDVAAAIDLSRVTVRRIRINFLFALLYNMIGIPLAAGVFEPVGVVLKPWMASAAMALSSVSVVGSSLFLKLYKKPEPEEGKPGFSLPFSSGYKAISTSDSGEIPNTGIEGKYIPRQEMNNEFISDDP"
ORIGIN      
tctttcaacttctagaaaagcaaaagggtaaatagattttctcgtaaaactaccatcactgatataagaaaaatatttcacagccataactgtttctaaaggttgttgttaaagataaagctggggttacccaagtacaagatggagatgacatcagtaaactagccattagtgactacacacacatcgcttacattgccgtcaatggcatgacatgtaattcttgtgtcaagactattgagaaaaccatatcacaaatgaatggtgtcaatgaaattaatgtctcccttgaggagaaagaagcacaaatcaagtttaacggcaaagcaaccaatggtgaactgcttacacaagctatagaggatgtcggttttgaagctacacttcaaagagttgtagacattcttacaaaagaaaatgcatatcagaaagaaaaggaaacctctgaaggtataagtgaaatagatcttaaagtccttggtatgacctgccagtcatgtgtgaagtctatccagaaggcgctatctcatacatcaggcgtgaaaaactcaaacatatctctccaagaagaaaaagcaactattaaatatgatgcttcaatcacaactcccgagaaactacaggaagtgattgaagatattggttttgaagctattctccctaaagaaaattctgggcttcgaaatgtcatgataaatgtagaaggaatgacatgtaattcttgtgtcaatacaatagaagcaaagattggacagaaaaatggagttcaatctatatctgtttctcttgaaaagaagcaagtgcagatctcgtacacagctgaaaagatgactccagaacagctggtagaagccattgagaacatgggctttgaagctcatcttctgaatgatggggtcaacgatgatgacaaagacatcagaatggctgtcattgctatagcgggaatgacatgcatgtcatgtgtgaaaaccgttgagggaaagatgtctactgttccgggagttataaatattaaggtatctctagaccttagaaaggctgatatcaagtatgatcctgaggtaactacgcctcaagacttgtgcagtgttattgatgacatgggatttgatgcttctcttccttctaaagatacagatagtgcttcaaaggactcttttgtggcaatggcgacgcaggaaggtgaaggaaattggggcataaggtttagtagtgctacaaacctagcaccacggtcaaagatggaagatatagaaaagatttacctccatattgaggggatgacttgtgcttcttgcgtggctagtattgagagggcattaatgaagaaaaaaggcgtaaagtcagtactggttgggttgctggcacaaaaagcagaagtgaagttcgctaaaggggccatttctccagacgtaatagtctgtcatgtcaatgaaatggggttcgtatgtgaactcatggataagaaaggacaaggcgagaatactgtgaatatattgataactggaatgacatgctcatcatgcgtccatcttatcgagtccacgttgatcaaacgacctggtatcctcaatgcttcggttgccctggcaacgagtagtggccggtttgtgtacgacacggaaatgacgggtccccgagacatcatcgaggctatagagggtctgggattctcggcttcgttgtcgtcaggtgacaagaacaaagacaagattgaccacagtgcctctattaaaaaatggaggagatcgttcctgttttctctcatctttgggtttcctgtgttttgtatcttcattacttacgtcatactagacgagctaggcaagaggccgcgcaacaatgtcttaccgggattatctctagaaaacctgcttatgtttattctatgcacacctgtacagttccttggtggtaggcatttttacgtcactgctttcaaggctcttaaacacggtacaacgaacatggatgtacttatcatgttggctactacaatagcttacgtctactcgataatagtcgtagctgtagctatgtcggagcaaagtgttaacagtcctatgactttcttcgacacgcctccaatgttgttggtcttcatctcgatgggacgttggatggagtatgtagccaaaggcaagacatctgaagcactggctaagttactgtccttacagccagctgatgctgtgatggttaagctcgccccgggaacattgaatgtcattgaggagaaggttatcactgtcgatctggttcaaagaggcgatattttaaaggtcgtacccggtgctaaaatacccgtagatggccgagtaatccaagggacatcaatggcagacgagtctttaatcacaggcgaatcaatgccggtacccaagaagatcggagactcggtgataggtggaacaatcaaccagaatgggtcgatactagtagaagcaacccacgtagggcaagacactactttatcacagatctgcaagcttgttcaggaagcacagacttccaaggctcctatacaaaagtttgcggacaagctatctggatattttgtgccggtggtagttctcatctccgttttaactctaatcgtatggctcgtcatgggatacgtcaatatcaagctgttacataagaaattcgatccgaaggcagacaacaaagacgagttcattataggattcgccttccagattagtataacagtactggctatagcttgtccctgcgccctcggtcttgccaccccgacagctgtgatggtcggtacagggattggagcccagaatggtattcttattaaaggtggagaaccactggagactgcacacaaggtgactgcagtagtattcgataagacaggtacaataactcacgggacacccgaagtgattaaaacagcactgttcgttaatcccgatgtatgtagcttacctctattgctggctgtagcagggacggctgagaacaatagtgaacacccgcttggagtagcggtcactaagtatgctaaaaaggagcttaatactgagactcttggtcagtgtactggtttcgaggcggtacctggttatggtctctcttgtaccgttaccgatgtggacggactgcttaacgtgagagttaaaaacgaacagaatatcgatgttataatagacggtaaagtgactgatacattgcgggacgtctctcttaacgaagaggacagtccacccaaccttgacagtgcaagcaccagtaactataaagtgttgattggtaatcgtgactggatgcaaatgaatggcttagtggtaacagacgaaatagaagaggccatgcaaacacacgaactgaaaggacaaacggccgtactcatagctatcgatggtaaactggtagcaatgatggcagtagcggacacagtcaagagcgaggcacaagccactgtagcaacactaaagaggatgggcattcgtgtcgtactgctcactggtgacaataagaaaactgccatggccatagctagtcaggtcggtattcaacaagtattcgccgaagttctcccatcacataaagtagctaagatcaaatccctccaagaacgtggcttcatcacggctatggttggtgacggcatcaacgattctcctgccttagcccaggcacacgtaggaattgctataggaactggtactgatgtagctgtagaagcagctgatattgttcttatcaagaatgacctgatggacgtagctgctgcaatcgacctatcacgtgtgacagtacgccgtattcgtatcaacttcctgttcgcactattgtacaatatgattggtattccacttgccgctggtgtctttgaaccggttggtgtagtactcaagccctggatggctagtgcagctatggctctctcttctgtctctgttgttggttcttcattatttctgaaactatataaaaagccagagcctgaagaaggaaaacccgggtttagccttccattctcatcagggtacaaagccatcagtacaagtgactctggcgagatacctaatactggtattgaaggcaaatatattccaagacaagaaatgaataatgagttcatctctgacgacccgtaaacgagcaccatcaggaaaaaaacaattatagataattaaattatagaaagtcattattcgactatatattttcatgcgtgattttattgtagatgtgaatgacatacaaaatctcattcatcaaaacaaccgcaaagttaaaaaagttttatactaggtacccaatagttatcaaactcaataatcaagggaatacatagagtactagggggtttctgtgggttgtatcagtattcctttaaatctctcattaaaaaagcgcattgcataattgagggcagaatcgaaaactgagcacacgatacatgcatgtgtgcaaaaatttaaagggtttttaataattattttgtcatactaaactattttgttaatatttcagataagttaatcctataataaccattctaattggttcattaggacgtagatgttgattggtttaccagagcgtaatccattttagtgtcaaacaacaccatgctagcaagcatgaagattagttgccttgttttcaactcggcctttgattggtctgtcgatactatgcgtttatcttgaattcccatttccacagtaatatccccattcttttccgccatgcattttttttttaggttttttttctcctgtttttttttttttttttttttttttttttttccaacaattccaaaagcgcagatctcttcttttcttttgctatgactattccagagcaaagatcaatgcagttgcgcatcttgaactctgtttcagttgccttgtctaagtgaacaggaattactgtggaaatttgacgctttttctataggtgcctcctataaaaaccggcagacatgatactgaataagcctgaagcgagatgacgttttacccccgtctccagaccataaaccttttcacagtgcttttgttctttaattatgactattgttcctgtattctctaaggaatcaaaaattttaatatgaaagaattttaaaaactattatggtatagagtcggggggtaaaacgtcatctcgcttcaggcttattattaattaaaactcgttatcaacgacaaaatatctaatacatatatattatattctagcccaatggtaaaacgcccaggcatcagtcaaaatagggttaaaaaatgcattaacaatttaaaagctactgagctaataagtaacaaaattgattttatttctaataaactatttcatatattaactggc
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]