2025-07-11 14:28:02, GGRNA.v2 : RefSeq release 229 (Mar, 2025)
LOCUS XM_031697703 5343 bp mRNA linear INV 25-NOV-2019 DEFINITION PREDICTED: Actinia tenebrosa copper-transporting ATPase 1-like (LOC116290626), transcript variant X2, mRNA. ACCESSION XM_031697703 VERSION XM_031697703.1 DBLINK BioProject: PRJNA590223 KEYWORDS RefSeq. SOURCE Actinia tenebrosa (Australian red waratah sea anemone) ORGANISM Actinia tenebrosa Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; Actiniidae; Actinia. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_022258947.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Actinia tenebrosa Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5343 /organism="Actinia tenebrosa" /mol_type="mRNA" /isolation_source="Intertidal zone" /specimen_voucher="ECE2019" /db_xref="taxon:6105" /chromosome="Unknown" /tissue_type="tentacle, column" /dev_stage="adult" /geo_loc_name="Australia: Point Cartwright, Queensland" /collection_date="05-Sep-2015" gene 1..5343 /gene="LOC116290626" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns" /db_xref="GeneID:116290626" CDS 210..4118 /gene="LOC116290626" /codon_start=1 /product="copper-transporting ATPase 1-like isoform X2" /protein_id="XP_031553563.1" /db_xref="GeneID:116290626" /translation="
MTCNSCVKTIEKTISQMNGVNEINVSLEEKEAQIKFNGKATNGELLTQAIEDVGFEATLQRVVDILTKENAYQKEKETSEGISEIDLKVLGMTCQSCVKSIQKALSHTSGVKNSNISLQEEKATIKYDASITTPEKLQEVIEDIGFEAILPKENSGLRNVMINVEGMTCNSCVNTIEAKIGQKNGVQSISVSLEKKQVQISYTAEKMTPEQLVEAIENMGFEAHLLNDGVNDDDKDIRMAVIAIAGMTCMSCVKTVEGKMSTVPGVINIKVSLDLRKADIKYDPEVTTPQDLCSVIDDMGFDASLPSKDTDSASKDSFVAMATQEGEGNWGIRFSSATNLAPRSKMEDIEKIYLHIEGMTCASCVASIERALMKKKGVKSVLVGLLAQKAEVKFAKGAISPDVIVCHVNEMGFVCELMDKKGQGENTVNILITGMTCSSCVHLIESTLIKRPGILNASVALATSSGRFVYDTEMTGPRDIIEAIEGLGFSASLSSGDKNKDKIDHSASIKKWRRSFLFSLIFGFPVFCIFITYVILDELGKRPRNNVLPGLSLENLLMFILCTPVQFLGGRHFYVTAFKALKHGTTNMDVLIMLATTIAYVYSIIVVAVAMSEQSVNSPMTFFDTPPMLLVFISMGRWMEYVAKGKTSEALAKLLSLQPADAVMVKLAPGTLNVIEEKVITVDLVQRGDILKVVPGAKIPVDGRVIQGTSMADESLITGESMPVPKKIGDSVIGGTINQNGSILVEATHVGQDTTLSQICKLVQEAQTSKAPIQKFADKLSGYFVPVVVLISVLTLIVWLVMGYVNIKLLHKKFDPKADNKDEFIIGFAFQISITVLAIACPCALGLATPTAVMVGTGIGAQNGILIKGGEPLETAHKVTAVVFDKTGTITHGTPEVIKTALFVNPDVCSLPLLLAVAGTAENNSEHPLGVAVTKYAKKELNTETLGQCTGFEAVPGYGLSCTVTDVDGLLNVRVKNEQNIDVIIDGKVTDTLRDVSLNEEDSPPNLDSASTSNYKVLIGNRDWMQMNGLVVTDEIEEAMQTHELKGQTAVLIAIDGKLVAMMAVADTVKSEAQATVATLKRMGIRVVLLTGDNKKTAMAIASQVGIQQVFAEVLPSHKVAKIKSLQERGFITAMVGDGINDSPALAQAHVGIAIGTGTDVAVEAADIVLIKNDLMDVAAAIDLSRVTVRRIRINFLFALLYNMIGIPLAAGVFEPVGVVLKPWMASAAMALSSVSVVGSSLFLKLYKKPEPEEGKPGFSLPFSSGYKAISTSDSGEIPNTGIEGKYIPRQEMNNEFISDDP"
misc_feature 210..383 /gene="LOC116290626" /note="Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371" /db_xref="CDD:238219" misc_feature order(210..218,225..227) /gene="LOC116290626" /note="metal-binding site [ion binding]" /db_xref="CDD:238219" misc_feature 465..653 /gene="LOC116290626" /note="Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371" /db_xref="CDD:238219" misc_feature order(483..491,498..500) /gene="LOC116290626" /note="metal-binding site [ion binding]" /db_xref="CDD:238219" misc_feature 690..881 /gene="LOC116290626" /note="Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371" /db_xref="CDD:238219" misc_feature order(708..716,723..725) /gene="LOC116290626" /note="metal-binding site [ion binding]" /db_xref="CDD:238219" misc_feature 930..1121 /gene="LOC116290626" /note="Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371" /db_xref="CDD:238219" misc_feature order(948..956,963..965) /gene="LOC116290626" /note="metal-binding site [ion binding]" /db_xref="CDD:238219" misc_feature 1275..1448 /gene="LOC116290626" /note="Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371" /db_xref="CDD:238219" misc_feature order(1284..1292,1299..1301) /gene="LOC116290626" /note="metal-binding site [ion binding]" /db_xref="CDD:238219" misc_feature 1488..1682 /gene="LOC116290626" /note="Copper chaperone CopZ [Inorganic ion transport and metabolism]; Region: CopZ; COG2608" /db_xref="CDD:442020" misc_feature 1749..3905 /gene="LOC116290626" /note="P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B; Region: P-type_ATPase_Cu-like; cd02094" /db_xref="CDD:319783" misc_feature order(2730..2732,2736..2738,3813..3815) /gene="LOC116290626" /note="putative Cu binding site [ion binding]; other site" /db_xref="CDD:319783" misc_feature order(2862..2870,3072..3074,3264..3272,3360..3362, 3480..3488,3546..3548,3555..3557,3564..3566,3621..3623, 3630..3632) /gene="LOC116290626" /note="putative ATP binding site [chemical binding]; other site" /db_xref="CDD:319783" ORIGIN
tctttcaacttctagaaaagcaaaagggtaaatagattttctcgtaaaactaccatcactgatataagaaaaatatttcacagccataactgtttctaaaggttgttgttaaagataaagctggggttacccaagtacaagatggagatgacatcagtaaactagccattagtgactacacacacatcgcttacattgccgtcaatggcatgacatgtaattcttgtgtcaagactattgagaaaaccatatcacaaatgaatggtgtcaatgaaattaatgtctcccttgaggagaaagaagcacaaatcaagtttaacggcaaagcaaccaatggtgaactgcttacacaagctatagaggatgtcggttttgaagctacacttcaaagagttgtagacattcttacaaaagaaaatgcatatcagaaagaaaaggaaacctctgaaggtataagtgaaatagatcttaaagtccttggtatgacctgccagtcatgtgtgaagtctatccagaaggcgctatctcatacatcaggcgtgaaaaactcaaacatatctctccaagaagaaaaagcaactattaaatatgatgcttcaatcacaactcccgagaaactacaggaagtgattgaagatattggttttgaagctattctccctaaagaaaattctgggcttcgaaatgtcatgataaatgtagaaggaatgacatgtaattcttgtgtcaatacaatagaagcaaagattggacagaaaaatggagttcaatctatatctgtttctcttgaaaagaagcaagtgcagatctcgtacacagctgaaaagatgactccagaacagctggtagaagccattgagaacatgggctttgaagctcatcttctgaatgatggggtcaacgatgatgacaaagacatcagaatggctgtcattgctatagcgggaatgacatgcatgtcatgtgtgaaaaccgttgagggaaagatgtctactgttccgggagttataaatattaaggtatctctagaccttagaaaggctgatatcaagtatgatcctgaggtaactacgcctcaagacttgtgcagtgttattgatgacatgggatttgatgcttctcttccttctaaagatacagatagtgcttcaaaggactcttttgtggcaatggcgacgcaggaaggtgaaggaaattggggcataaggtttagtagtgctacaaacctagcaccacggtcaaagatggaagatatagaaaagatttacctccatattgaggggatgacttgtgcttcttgcgtggctagtattgagagggcattaatgaagaaaaaaggcgtaaagtcagtactggttgggttgctggcacaaaaagcagaagtgaagttcgctaaaggggccatttctccagacgtaatagtctgtcatgtcaatgaaatggggttcgtatgtgaactcatggataagaaaggacaaggcgagaatactgtgaatatattgataactggaatgacatgctcatcatgcgtccatcttatcgagtccacgttgatcaaacgacctggtatcctcaatgcttcggttgccctggcaacgagtagtggccggtttgtgtacgacacggaaatgacgggtccccgagacatcatcgaggctatagagggtctgggattctcggcttcgttgtcgtcaggtgacaagaacaaagacaagattgaccacagtgcctctattaaaaaatggaggagatcgttcctgttttctctcatctttgggtttcctgtgttttgtatcttcattacttacgtcatactagacgagctaggcaagaggccgcgcaacaatgtcttaccgggattatctctagaaaacctgcttatgtttattctatgcacacctgtacagttccttggtggtaggcatttttacgtcactgctttcaaggctcttaaacacggtacaacgaacatggatgtacttatcatgttggctactacaatagcttacgtctactcgataatagtcgtagctgtagctatgtcggagcaaagtgttaacagtcctatgactttcttcgacacgcctccaatgttgttggtcttcatctcgatgggacgttggatggagtatgtagccaaaggcaagacatctgaagcactggctaagttactgtccttacagccagctgatgctgtgatggttaagctcgccccgggaacattgaatgtcattgaggagaaggttatcactgtcgatctggttcaaagaggcgatattttaaaggtcgtacccggtgctaaaatacccgtagatggccgagtaatccaagggacatcaatggcagacgagtctttaatcacaggcgaatcaatgccggtacccaagaagatcggagactcggtgataggtggaacaatcaaccagaatgggtcgatactagtagaagcaacccacgtagggcaagacactactttatcacagatctgcaagcttgttcaggaagcacagacttccaaggctcctatacaaaagtttgcggacaagctatctggatattttgtgccggtggtagttctcatctccgttttaactctaatcgtatggctcgtcatgggatacgtcaatatcaagctgttacataagaaattcgatccgaaggcagacaacaaagacgagttcattataggattcgccttccagattagtataacagtactggctatagcttgtccctgcgccctcggtcttgccaccccgacagctgtgatggtcggtacagggattggagcccagaatggtattcttattaaaggtggagaaccactggagactgcacacaaggtgactgcagtagtattcgataagacaggtacaataactcacgggacacccgaagtgattaaaacagcactgttcgttaatcccgatgtatgtagcttacctctattgctggctgtagcagggacggctgagaacaatagtgaacacccgcttggagtagcggtcactaagtatgctaaaaaggagcttaatactgagactcttggtcagtgtactggtttcgaggcggtacctggttatggtctctcttgtaccgttaccgatgtggacggactgcttaacgtgagagttaaaaacgaacagaatatcgatgttataatagacggtaaagtgactgatacattgcgggacgtctctcttaacgaagaggacagtccacccaaccttgacagtgcaagcaccagtaactataaagtgttgattggtaatcgtgactggatgcaaatgaatggcttagtggtaacagacgaaatagaagaggccatgcaaacacacgaactgaaaggacaaacggccgtactcatagctatcgatggtaaactggtagcaatgatggcagtagcggacacagtcaagagcgaggcacaagccactgtagcaacactaaagaggatgggcattcgtgtcgtactgctcactggtgacaataagaaaactgccatggccatagctagtcaggtcggtattcaacaagtattcgccgaagttctcccatcacataaagtagctaagatcaaatccctccaagaacgtggcttcatcacggctatggttggtgacggcatcaacgattctcctgccttagcccaggcacacgtaggaattgctataggaactggtactgatgtagctgtagaagcagctgatattgttcttatcaagaatgacctgatggacgtagctgctgcaatcgacctatcacgtgtgacagtacgccgtattcgtatcaacttcctgttcgcactattgtacaatatgattggtattccacttgccgctggtgtctttgaaccggttggtgtagtactcaagccctggatggctagtgcagctatggctctctcttctgtctctgttgttggttcttcattatttctgaaactatataaaaagccagagcctgaagaaggaaaacccgggtttagccttccattctcatcagggtacaaagccatcagtacaagtgactctggcgagatacctaatactggtattgaaggcaaatatattccaagacaagaaatgaataatgagttcatctctgacgacccgtaaacgagcaccatcaggaaaaaaacaattatagataattaaattatagaaagtcattattcgactatatattttcatgcgtgattttattgtagatgtgaatgacatacaaaatctcattcatcaaaacaaccgcaaagttaaaaaagttttatactaggtacccaatagttatcaaactcaataatcaagggaatacatagagtactagggggtttctgtgggttgtatcagtattcctttaaatctctcattaaaaaagcgcattgcataattgagggcagaatcgaaaactgagcacacgatacatgcatgtgtgcaaaaatttaaagggtttttaataattattttgtcatactaaactattttgttaatatttcagataagttaatcctataataaccattctaattggttcattaggacgtagatgttgattggtttaccagagcgtaatccattttagtgtcaaacaacaccatgctagcaagcatgaagattagttgccttgttttcaactcggcctttgattggtctgtcgatactatgcgtttatcttgaattcccatttccacagtaatatccccattcttttccgccatgcattttttttttaggttttttttctcctgtttttttttttttttttttttttttttttttccaacaattccaaaagcgcagatctcttcttttcttttgctatgactattccagagcaaagatcaatgcagttgcgcatcttgaactctgtttcagttgccttgtctaagtgaacaggaattactgtggaaatttgacgctttttctataggtgcctcctataaaaaccggcagacatgatactgaataagcctgaagcgagatgacgttttacccccgtctccagaccataaaccttttcacagtgcttttgttctttaattatgactattgttcctgtattctctaaggaatcaaaaattttaatatgaaagaattttaaaaactattatggtatagagtcggggggtaaaacgtcatctcgcttcaggcttattattaattaaaactcgttatcaacgacaaaatatctaatacatatatattatattctagcccaatggtaaaacgcccaggcatcagtcaaaatagggttaaaaaatgcattaacaatttaaaagctactgagctaataagtaacaaaattgattttatttctaataaactatttcatatattaactggc
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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