2024-04-27 02:09:43, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_031320588 1533 bp mRNA linear VRT 02-SEP-2020 DEFINITION PREDICTED: Sander lucioperca piggyBac transposable element-derived protein 4-like (LOC116065155), mRNA. ACCESSION XM_031320588 VERSION XM_031320588.2 DBLINK BioProject: PRJNA576669 KEYWORDS RefSeq. SOURCE Sander lucioperca (pikeperch) ORGANISM Sander lucioperca Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Percoidei; Percidae; Luciopercinae; Sander. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_050174.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 2, 2020 this sequence version replaced XM_031320588.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Sander lucioperca Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.5 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1533 /organism="Sander lucioperca" /mol_type="mRNA" /isolate="FBNREF2018" /db_xref="taxon:283035" /chromosome="2" /sex="male" /tissue_type="muscle, testis, spleen" /dev_stage="adult" /country="Germany: Sachsen" gene 1..1533 /gene="LOC116065155" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 47 samples with support for all annotated introns" /db_xref="GeneID:116065155" CDS 71..880 /gene="LOC116065155" /codon_start=1 /product="piggyBac transposable element-derived protein 4-like" /protein_id="XP_031176448.2" /db_xref="GeneID:116065155" /translation="
MELIDVQLLGTGYKVFVDNFYTSPILFRDLLLKRIWACGTIRTNRIGFPRSKVNILVSKSPRGSIRWIRNDSLLFVQWRDTRDVFLCSTLHTAHAEDTVQRRVKAADGQWQLKDVSVPPVVQDYNRCMGGVDHSDALIGYYKVLHKTQRWYKTLFYHFMDIAIVNAFLLQKDLAIGKGEVPLHQKAFRETLAVELAEAGSSSTATPGPPPAPRGAHHRPVHISGHSTAGRLKCRQCHAKTPVKCSSCDIPLCFVAGRDCYNDWHVANDL"
misc_feature <71..571 /gene="LOC116065155" /note="Transposase IS4; Region: DDE_Tnp_1_7; pfam13843" /db_xref="CDD:433521" ORIGIN
atgggacttttttgtttatgagggaaagtgccagggaaacagtggtaagggactcagttatgaggcagtgatggagctaattgatgtacagttgctgggcaccggctataaggtctttgtagataatttttatacaagtccaatcctgtttcgtgacctccttctgaagaggatctgggcatgcggaaccatccgcacaaacagaatcggattcccaaggtcaaaggtcaacattctggtctcaaaatctcctcgtggcagcatacgttggatcaggaatgactccctgctctttgttcagtggcgagacacaagggatgtttttctgtgctcaaccctccacacagcccacgcagaggacacagtgcagaggagggtcaaagctgcagatgggcagtggcagttgaaggacgtctcagttccaccagtggtgcaggactacaaccggtgcatgggtggagtggaccactcagatgccctcatagggtattacaaagtcctgcacaagacccaacggtggtacaagactctgttttaccacttcatggacatcgcaattgtgaacgccttcctcctccagaaggaccttgcaattggcaaaggagaggtacctctgcatcagaaggcgttcagagagacgctcgcagtggagctggcagaggcggggtcttcctccacagccacacccggaccacctcctgctccacgtggagcacatcacaggccagtgcatatcagtgggcacagcactgctggtcggctgaagtgcaggcagtgtcatgcaaagacaccagtgaagtgctcctcctgcgatattcctttgtgctttgtcgctggccgtgactgttataatgactggcatgttgccaatgacctgtaattgtaaatactagtacagtgcctgttgaaattgtgcctgcaccacatatcggcgttcatcaaccaccagacccggtgtgtgtagagggagagacggtgttgtctcatgtcatctgatcgttaagaaatttaacacatcagcagaggtgctcattttccatacaggtttatgtttatgggacatatgtatatatttagtggcttgacggttaacggtgaagtatggatttgattcgctgggttcctgcaatttatagatatgtgtatgtaaaaagttatatagtagtacctgcaatacttttccagcatagcacttgttttactttgttgaccatttttaccaacggttccttcaaatgtcctttgtgttttgtcgcttgcgattgttacaatgtctggcatgttgccaataacctgtaaatatatgttgatttagatgtgtaaatagttatatagtaatgcttttttttgcactactttttcaccatagcacttatttgacatctttttacccttttttaccaaagggtccttctttgtgctttgttgcatgtagcacataacctgtacatacataattgtaaatatgtgtatttagatatgttaatagctgtaaatattgtgttaccttttatacactacttttccacctta
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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