2024-05-20 10:23:25, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_031251101 607 bp mRNA linear PLN 17-OCT-2019 DEFINITION PREDICTED: Ipomoea triloba heavy metal-associated isoprenylated plant protein 7-like (LOC116011700), mRNA. ACCESSION XM_031251101 VERSION XM_031251101.1 DBLINK BioProject: PRJNA574454 KEYWORDS RefSeq. SOURCE Ipomoea triloba (trilobed morning glory) ORGANISM Ipomoea triloba Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_044918.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Ipomoea triloba Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..607 /organism="Ipomoea triloba" /mol_type="mRNA" /cultivar="NCNSP0323" /db_xref="taxon:35885" /chromosome="3" /tissue_type="Young leaf" /dev_stage="Seedling" /country="USA: Raleigh" gene 1..607 /gene="LOC116011700" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns" /db_xref="GeneID:116011700" CDS 34..462 /gene="LOC116011700" /codon_start=1 /product="heavy metal-associated isoprenylated plant protein 7-like" /protein_id="XP_031106961.1" /db_xref="GeneID:116011700" /translation="
MGRLSFGKALDSLCLFSGSSLSSGSCFCSNGFDSPDDFEKKPFISPKVAGQVVKLKDVVAGPPTLAFHLKPKTVVLRVSMHCKSCAKKVEKHISKMEGVSSYQIDMETKMVVVIGDVVPFEVLESVSKVKNAQLWTTAPHLT"
misc_feature 256..417 /gene="LOC116011700" /note="Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371" /db_xref="CDD:238219" misc_feature order(271..279,286..288) /gene="LOC116011700" /note="metal-binding site [ion binding]" /db_xref="CDD:238219" ORIGIN
taggcttaatttctgataatcttgatcatcaagatggggaggctcagttttggcaaggcgttggattctttgtgcctgttttctggatcatcattatcgtcagggtcttgcttttgcagcaatggttttgacagtccagatgattttgagaagaagcctttcattagtcctaaagtagcagggcaggtggtcaagttgaaggatgttgttgcaggacctcccaccttggcttttcacctcaagcctaagacagtggtgctaagggtctccatgcactgcaaaagctgtgcaaagaaagtggagaaacatatctccaagatggaaggagtgagttcatatcaaatagacatggaaacgaagatggtagtggtgataggtgatgttgtgcctttcgaagtgttggagagtgtttcaaaggttaaaaatgcccagctttggaccactgctcctcaccttacttaattcatatatgcatccttctcatgtttatatattgaagttaattttgtatgtaaatttcaagtggccatatgatgttaaagaatcgaggaagtttagcttgtgtttcaataataatgcttgtgaaagctccaaaaattgatagcaa
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]