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2020-04-07 23:15:37, GGRNA.v2 : RefSeq release 99 (Mar, 2020)

LOCUS       XM_030781092            4397 bp    mRNA    linear   VRT 16-SEP-2019
DEFINITION  PREDICTED: Chanos chanos ATPase copper transporting beta (atp7b),
            transcript variant X3, mRNA.
ACCESSION   XM_030781092
VERSION     XM_030781092.1
DBLINK      BioProject: PRJNA564626
KEYWORDS    RefSeq.
SOURCE      Chanos chanos (milkfish)
  ORGANISM  Chanos chanos
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
            Gonorynchiformes; Chanidae; Chanos.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_044502.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Chanos chanos Annotation Release 100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.2
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4397
                     /organism="Chanos chanos"
                     /mol_type="mRNA"
                     /db_xref="taxon:29144"
                     /chromosome="8"
     gene            1..4397
                     /gene="atp7b"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:115817928"
     CDS             168..4304
                     /gene="atp7b"
                     /codon_start=1
                     /product="copper-transporting ATPase 2 isoform X3"
                     /protein_id="XP_030636952.1"
                     /db_xref="GeneID:115817928"
                     /translation="
MKKINTFTGFSNYASKPSSCGSSNGEQVCMVDCRRIAPNGSFDTPCRCGSELCTCRSEQDSTGGHRPNKSKENGGLPEGWLPQRHAFDNMAFEPGSPNELHPHSGHFSRATLSLSGLTSPSCVQAIHTRISALKGVASLSVSQASSLAWVDYHPSAVTSREICEQIKAMGYGVKDVAVTGETGVAESAVDEALVRIRVEGMTCQSCVRSIEGKMGTLAGVLGICVSLSDKEATVSFDCGKVQPEELRVCIEEMGFDAALMETTPLKSPQVANAAQDAMGGSREVTLGVEGMHCGSCVNNITKSVSDMLGVHSVLVSLENKSVNLKYDSSLITLDTVRGIVEGLPPGNFRVTLPGGTSELSRPLLRTGDPVNGQSSIPIQTVEIKILGMTCNSCVQSIEGMISQKPGVHSIKVSLKEEKGTVTYNPSLTSPEGIREAIDDMGFEASLQQGGPGSLENALTNEGSCDKKIFDLRYPSPPDTTPKSPTSSSAASGPASITPGPKEGNTQKCFIHVTGMTCASCVANIERNLLKHRGIKSVLVALMAGKAEVQYDPEVLDAAQVVQHISSLGFGASLMEENPAKDGILNLSVTGMTCASCVHNIETKLLRTRGILEASVALATNKAHVKFDTEELGPRDIIRIIEGLGFGASVIRHNGVGKRSGLDHQREIRQWKQSFLFSLVFGIPAMGLMIYMMVMDSLHKEHGGSMPMDQNLLPGLSLLNLAFFLLCTPVQIFGGRYFYIQAYRSLRHGVANMDVLIVLATTISYVYSCTILLVAMAERAKQSPVTFFDTPPMLFVFISLGRWLEHVAKSKTSEALAKLMSLQATDATIVTLGRDNSIISEEQVSVELVQRGDIVKVVPGGKFPVDGKVINGTSMADESLITGEPMPVKKKPGSCVIAGSINAHGALLVEATHVGADTTLSQIVRLVEEAQTSKAPIQQLADKLSGYFVPFIVIVSLITLVVWIVIGFLDFDVVVKYFPGYDENIPRTEVIVRFAFQASITVLSIACPCSLGLATPTAVMVGTGIGAQNGILIKGGEPLEMAHKIRTVMFDKTGTITNGVPRVTRVLVLWDQARLPLRTILAVVGTAEASSEHPLGIAVAKHCKEELGTESLGYCRDFQAVPGCGISCKVSNVEDLLQSTETTHTQAQTRLTLHGVTTDESSLTAEADTEPGGHVYSVLIGNRQWMRANGLHVTADVNEAMTSHESKGQTAILVAIDGVLCAMLAIADTVKAESALAVHTLRSMGIDVVMITGDNRRTAKAIATQVGIRKVFAEVLPSHKVAKVQELQARGLKVAMVGDGVNDSPALTRADLGIAISTGTDVAIEAADVVLIRQVCLCLWGWSSSHGWALQQWQLPLYQWWFHLCYCDCIRRRRQRCTR"
ORIGIN      
tcctgtgctgggcgcaaaaccagcgactctttaaattaagtcggaccgactttttctatcggattgacagcagcatgacaggaagactcaacaacaaaatgtattttacgttgacggatgaaaagcagatgaaattgatcatgttagccttgagttaaagtgtcgcaatgaaaaaaatcaatacatttaccggtttctcaaattatgcgtccaagccgtcgagttgcggctcaagcaatggagagcaggtttgtatggtggattgtcggcgaatcgcaccgaacggttcgtttgacaccccgtgcaggtgtggatcggaactatgtacctgtcgctccgagcaagattccacgggcggacataggcctaataaatctaaggaaaatgggggtctccctgaaggatggctacctcagagacatgcctttgacaatatggcctttgagcctgggagcccaaatgagcttcacccccattcgggtcacttttcccgggcaacgctcagcctctctggcctaacctcaccttcttgcgtccaggccatccacacacggatatcagcgctgaagggagtagcctcactctctgtctctcaggccagtagcttagcttgggtggactatcacccttccgccgtcacgtccagggagatctgcgagcagatcaaggcgatggggtacggggtgaaggacgtagccgtgacaggggagaccggagtcgcggagtcagcggtggacgaggccctggttaggattagggtggagggaatgacgtgccaatcctgtgtgcgctccattgagggaaagatgggtacgctagctggggtgctgggaatctgtgtatcattatctgataaagaagcaactgtgtcctttgactgtgggaaagttcaaccagaggaactacgagtgtgtattgaagaaatgggattcgatgccgctctgatggagacgaccccactaaagagcccccaggttgcaaatgccgcacaggacgctatgggaggttcaagagaagtgaccttgggagtggaagggatgcattgtgggtcatgtgtaaataacatcacaaagagtgtgtctgacatgcttggggttcactctgtattggtctccctggaaaacaagagcgtgaatctcaaatacgacagttctcttattactttggatacagtcagaggcattgtggagggtcttccaccagggaattttcgggtgacccttcccggagggacatcagaactttctaggcctttgctcaggactggtgaccctgtgaatggtcaaagttccatcccaattcaaacagtcgagataaagattttaggaatgacttgtaactcctgtgtacaatccatagaagggatgatttcccagaagcccggggtgcattccataaaggtttctctgaaggaagagaagggaactgtcacatacaaccccagcctgaccagccctgaaggcataagagaggccattgatgatatgggctttgaagcatctcttcaacaaggtggtcctggatctttggagaatgcgttaacaaatgaggggtcatgtgataaaaagatatttgacctcaggtacccttccccacctgacaccacccccaagtccccaacgtcctctagtgcagcttctggtcctgcatccatcacccctggtccaaaggaagggaacacccaaaagtgcttcattcatgtgacaggcatgacatgtgcatcctgtgtggctaacattgagagaaacttactgaagcatagagggattaaatcggtcttggtagccctgatggccggtaaggcagaggtccagtatgacccagaggtcctggatgctgctcaggttgttcagcacatctccagtcttggttttggtgcgtcactgatggaggaaaatccggccaaagatgggattctgaatctttctgttactggtatgacttgcgcctcctgcgttcataacattgaaaccaaattactcagaaccagaggtattctagaagcctcagttgccctggcaaccaacaaagctcacgtgaagtttgacacagaggagcttgggccgcgggacatcatcagaataatcgagggacttggctttggggcatctgtgataagacacaacggtgtagggaaaaggagtggcttggatcaccaaagggagattcggcagtggaaacagtcctttttgttcagcctggtgtttggtatcccggcaatggggctaatgatctatatgatggtgatggacagtctccacaaagaacacggtggctccatgcctatggaccagaacctcttaccgggcctgtccctcctgaacctggccttcttcttgctctgcacccctgttcagattttcggcggccgttacttttatattcaagcatatcgttccctgaggcatggcgtggccaacatggatgtcttgatcgtcttggcaaccaccatttcctatgtctactcctgcaccatcctattggtggccatggccgaaagagcgaaacaaagccctgtcaccttcttcgacacgccgccgatgctgttcgttttcatttctctcggccgatggttggagcacgttgctaagagcaaaacatcagaggctctagccaaactcatgtccctgcaggcaacagacgccaccatagtcacgctgggccgggataactccatcatcagtgaggagcaggtctcggtggagctggtccagagaggggacatagtgaaggttgtgcctgggggaaagttccctgtggacgggaaggtgattaatgggacatccatggcagacgagtccctcatcactggagaaccgatgccggtcaagaaaaaaccaggcagctgtgtgatcgctggctccatcaatgcccacggggccctgctggtggaggccacacacgtaggggcagacaccaccctcagccagatagtccgactggtcgaggaggctcagacctcgaaggcgccgatccagcagctggcggacaagcttagtggctacttcgtccccttcattgtcatcgtctccctgataacgctggtggtctggatcgtcatcggctttctggacttcgacgtcgtggtcaagtactttcccggttacgacgagaacatcccgcggacggaagtgatcgtgcggttcgccttccaggcttccatcaccgtgctgtccatagcctgcccctgttcgctgggcctggccacgcccactgccgttatggtcggaaccggcataggagctcagaatggcatcctcatcaaaggcggagaacccctggagatggcccataagatccgtacggtaatgtttgataagaccggcaccatcactaacggggtcccgcgcgtgacccgggtgctggtactgtgggatcaggcacgactgcccctccgtaccatcctggcggtggtgggcacagctgaggccagcagcgagcatcctttgggtatagctgtcgctaaacactgcaaagaggagctggggacagagtctcttggatactgtcgtgacttccaggcagttccgggctgcgggatcagctgtaaagtgtctaatgtagaggacttactgcagtctactgagaccacacacacacaggcccagactcgtttgactctgcacggagtcacaacggacgagagcagcctcactgccgaagcagatactgaaccgggtggtcacgtgtattcagtgctgattggaaacaggcagtggatgagagctaatgggctccacgtcacagctgatgttaacgaagccatgaccagtcacgagagcaagggacagaccgccattctagtagccatagatggcgtgctgtgtgccatgctggccatagctgacaccgtgaaggctgaatcagccctggccgtgcacacgcttcgcagtatgggtatcgatgtggtcatgattacaggggataacagacgcacagccaaagccattgctacacaggtggggattagaaaagtctttgcggaggtcttgccctcacataaagtggcaaaggtacaggagctccaggcgaggggtctgaaggttgccatggtgggcgacggggtaaacgattcgcccgccctcacccgggctgacctgggcatcgccatcagcacgggcaccgacgtggccatcgaggcagctgacgtggttcttattaggcaggtttgtttatgcctgtggggttggtcctccagccatggatgggctctgcagcaatggcagcttcctctgtatcagtggtggtttcatctctgctactgcgactgtataagaagacggcggcagaggtgtacgagatgagagcgcagggtcgtatgcagagtctcacctcgtctcaggtgagcacccgcgtgggcctggaggagcgtcgccgtagcccccaggccgctcgcg
//

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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]