2024-04-18 12:09:04, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_030558936 4116 bp mRNA linear VRT 24-AUG-2019 DEFINITION PREDICTED: Gopherus evgoodei NRDE-2, necessary for RNA interference, domain containing (NRDE2), transcript variant X5, mRNA. ACCESSION XM_030558936 VERSION XM_030558936.1 DBLINK BioProject: PRJNA559383 KEYWORDS RefSeq. SOURCE Gopherus evgoodei (Goodes thornscrub tortoise) ORGANISM Gopherus evgoodei Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Testudinoidea; Testudinidae; Gopherus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_044325.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Gopherus evgoodei Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4116 /organism="Gopherus evgoodei" /mol_type="mRNA" /db_xref="taxon:1825980" /chromosome="4" /sex="male" /tissue_type="whole blood" /ecotype="Sinaloan lineage" /country="Mexico: Sonora" /collection_date="2010-08-10" /collected_by="T. Edwards" gene 1..4116 /gene="NRDE2" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns" /db_xref="GeneID:115649858" CDS 527..3403 /gene="NRDE2" /codon_start=1 /product="protein NRDE2 homolog isoform X4" /protein_id="XP_030414796.1" /db_xref="GeneID:115649858" /translation="
MVEKKQSHKRPERYFTKNSVQLLSTDGIPVYSKSQTSSSGPSTFIPVSQLDSDAPPPTTCVNPLGIYDPLTTLWLEGKGPPEHETLKQQASQETSENVNSILKAKVEEYNRMVRENPRDVHIWMEFVSFQDEVMRGPSPYAIKDGEQEIRRKSFKLILEKKLAILERAIESNPNDVDLKLAKLKLCTEFWEPSSLIKEWQKLVFLHPNNPVLWQKYLLFCQSQFSTFSVSKVHSLYGKCLSTLAAVQDGSMVSHPVLPGTEEAMLAVFLQQCHFLRQAGHSEKAVSLFQALIDFTFFKPDSVKDLPTRGQVEFFEPFWDSGEPRFGEKGAKGWKSWMHQQEKGGWIIINKPDEDEEDVDEDQEIKDKTLPKWQIWLDIECSRETRHWLPWRPDKTKKQTEEDCDDPERQVLFDDLGPSLIRLSSPDLQFQLLYSFLQFVGVPCGRSLFPSNLYIAMDENNIFDTEQSERPLTTFDSLLSGVNSIGHMDTMTRGRQHIGHCKEGEEFIQNVFHLILPLFSGKEKANLSVCWLQYEISKVVQCLQAKNKKKLKSQGKKSKKLAKNLLKASENRNNLSLWKLYAYLEWLLGNTEDARKVFDTALCLAGTEGMRNTQLCNLSLLYASLEVELLENLEETVMSRALHILTKLAESGPYVPYTGQLLSVNILKARKAYEHALQDYLSESPVSNWDQASSSSQLVNLVGCYALFQYLTVGIDAAVLICRHISEKLKGSASQKFESIGENLGIHNFPTALEAVTLMHTNLLRYHMKVSIYPLNPLREVLMEALKLYPSNQSLWRSYIQIQSKSHNASKARRFFDSVTRSTKSLEPWLFAIQAEEMRKKLVENVQRVDVGEIYSTIPETGLTNRIKALFEHAIQSENGAHCPLLWRMYLNFLFSLGNKERSKGLFYKALQNCPWAKVLYMDAIEYFPDQLQETLDLMTEKELRVRVPIEELELLLED"
misc_feature <533..667 /gene="NRDE2" /note="MTR4-interacting domain (MID) found in nuclear exosome regulator NRDE2 and similar proteins; Region: NRDE2_MID; cd22200" /db_xref="CDD:412062" misc_feature 848..1846 /gene="NRDE2" /note="necessary for RNA interference; Region: NRDE-2; pfam08424" /db_xref="CDD:429988" ORIGIN
cagcagagaccttcaggacagacaagaatccagaccctgcaaactgggaatacaagtcactgtatcgaggggacatagcaagtgattgtgcagagtgccactcacagcaccaaccatggcaatggcgattttagctggtatctcactcctgaaggtggtaaaggcacagagaacatagctgtgctggtccccagagctgtttaggcccgtatgctgctagcctgtttactgcaatggtgcctgccaaagttatcgctgactggcatgggaaagtgtcctactgtggaggaagaaataaggctgccatcccatgaaagcttcaggagaggattgcagtgtacctccatgaaaacttcattgagattgctcaggaggattcaaggggcatccctgtgtacataaacaaactgctctgcatggccccctgcctaactctagagggagaatgaaaaactgatacaagcggaaaggggactcatgccttggtattgacctaacgaaacaatgtataacttgggaaagttccatggtagaaaagaaacagtcccacaagcgacctgaacgctacttcacgaagaatagtgtgcagttattgagcacagatggaattccagtttacagtaaaagccaaacttcttcatctggtccaagcacttttataccggtttcacaactggacagtgatgctcctcctccaacaacctgtgtgaatcctcttgggatttatgatccattgaccacactctggttggaaggaaaaggtcccccagagcatgagactttaaagcagcaggcatcccaagagaccagtgagaatgttaactctattctaaaggcaaaagtggaagaatataataggatggtcagagaaaatccaagagatgttcacatttggatggaatttgtttcttttcaggatgaagtaatgagaggacccagcccttacgccatcaaagatggagagcaggaaataaggagaaaatcattcaagctaatcctagaaaagaaactggccattttagagagagctattgaaagcaacccaaatgatgttgatctgaaacttgccaagctgaagctttgtacagaattctgggaaccatcaagtttgatcaaagaatggcagaaactggtttttttgcatcccaataatccagtcctgtggcagaaatatctcttattttgtcaaagtcagttcagcaccttttcagtttcaaaagtccatagtttatatggaaaatgtttgagcactttggcagctgtacaggatggcagcatggtatcacatcctgtactgcctggcacagaagaagctatgttagctgtctttcttcagcagtgccattttcttagacaggcgggccattctgagaaagctgtgtctttgttccaagccctgattgacttcaccttctttaaacctgacagcgtaaaagatctgccaacaagaggacaggtggagttctttgaaccattttgggatagtggagagcctcggtttggagaaaaaggagcaaaaggctggaaatcatggatgcatcaacaagaaaagggaggctggattatcatcaataaacctgatgaggatgaggaagatgtagatgaagatcaagaaataaaggataaaactctacctaaatggcaaatttggctggacattgaatgttcccgtgaaacaaggcattggctgccttggcgacctgacaaaactaaaaagcagactgaagaagattgtgacgacccagagagacaggtattgtttgatgatcttggtccatctttaatcagactttctagtccagatcttcagtttcagctgctatactcatttctgcaattcgtgggagtcccatgtgggcgtagtctgtttccttcaaatctctatatcgctatggatgagaacaatatctttgacactgagcagtctgagaggccattgacgacttttgactcactgctttctggagtcaatagtattggccatatggacacaatgacaagagggagacagcacataggacactgtaaggaaggagaggagttcatacagaatgtctttcatttaatattgccgttgttttcaggaaaggaaaaggcaaacctttctgtctgttggctacaatatgaaatctcaaaggttgttcagtgtctccaagcaaaaaacaagaagaaactgaagtcacagggaaagaaaagcaaaaaactagccaagaatctccttaaggcatctgaaaaccgaaacaacctttccctctggaaactgtatgcctacttggaatggttacttggcaacactgaagatgctagaaaagtgtttgatacagctctttgcttagcaggcactgaaggaatgagaaatacccaactctgtaatctgagcctgctttatgcttcactagaagtggagctactagagaatttggaggaaactgttatgtcacgtgctttacatatattgaccaaactggctgaaagtggaccatatgtaccttatactgggcaactgctatctgtgaatatcttgaaagctcggaaggcatatgagcatgcattgcaagattatttaagtgaaagtccagtctctaattgggatcaagccagcagttctagccaactggttaatttagttggttgttatgcacttttccagtatttgactgttgggattgatgctgctgtgttaatatgtagacatatttctgaaaagcttaaaggttctgcttcacagaagtttgaaagcattggagaaaatcttggcattcataatttccccactgctcttgaagctgtcacactcatgcacacaaatttactcaggtaccatatgaaagttagcatttaccctttaaatccactgcgagaggtactaatggaagctttgaagctgtatcctagcaaccagtctctttggaggtcatatatccagatccaaagcaagtctcacaatgctagcaaagcacgaagattttttgatagtgtcacaaggtctactaagtccctagagccgtggctgtttgcaatccaagcagaggagatgagaaagaagcttgtcgagaatgttcagagagtagatgttggagaaatatattcaacaattcctgaaactgggttaacaaatcggatcaaagctttatttgaacatgcaattcagagtgaaaatggtgcccattgtccattgctgtggagaatgtatttgaactttctgttttctctaggaaataaagaaaggagcaaaggactgttttataaagcccttcagaactgtccctgggcaaaggtgctgtatatggatgcaatagagtattttccagatcaactgcaagagaccctagatctaatgactgaaaaagaattgagagtaagggtacctatagaagaactggaattgctactggaagattaaaaaaaagatggtgcaagaacaacaacaacaaaaaagaaaaagaaaaagcaaacctaaaaaaagggaatgttgacgtccaaaagtctgttttcaactattatctttgactgggacttcaatggactatgcacatatttttcttactaaaaataatttgttaaaaactttgctattcctatgccgcactactagctgtaaatatcttaaaatttgttccacatcttgtagtgggctgctttacacatgtaaatacatctgtttttctggaaagcaaaatccacaaaatgatacttaccgataattaatttgctgttggaccccacctacagttcatatgctacagtttaatacagccgttcccttgaattcagtggaatgtcaagacatgcctactacaatttgctaggcagcacaggaagtaaacatctgccaaatgtaccctttacaatctgctactgtcaacaggctaaatatgtcctgcttggtgtggatgtatatataaatatccacatatgttccagtatcttgctctctgtacaaaacaagaagataagtaaaactcttgaaaaaaattaccagaacaacaattagctcagttgataaactgttaaatgccaaaacttgtttgacaaagtatcagttttgtctttgtatgtgtaataatatgacaattctaatgtaaatatttattaaaacatacttaaatattttaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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