2024-04-20 15:56:16, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_030464273 3416 bp mRNA linear VRT 20-AUG-2019 DEFINITION PREDICTED: Calypte anna argonaute RISC component 4 (AGO4), transcript variant X5, mRNA. ACCESSION XM_030464273 VERSION XM_030464273.1 DBLINK BioProject: PRJNA558503 KEYWORDS RefSeq. SOURCE Calypte anna (Anna's hummingbird) ORGANISM Calypte anna Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Caprimulgimorphae; Apodiformes; Trochilidae; Calypte. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_044268.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Calypte anna Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3416 /organism="Calypte anna" /mol_type="mRNA" /isolate="BGI_N300" /db_xref="taxon:9244" /chromosome="23" /sex="female" /country="USA" gene 1..3416 /gene="AGO4" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 22 ESTs, 43 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns" /db_xref="GeneID:103527616" CDS 261..2645 /gene="AGO4" /codon_start=1 /product="protein argonaute-4 isoform X3" /protein_id="XP_030320133.1" /db_xref="GeneID:103527616" /translation="
MVRHFKMQIFGDRQPGYDGKRNMYTAHPLPIGRDRVDMEVTLPGEGKDQTFKVSIQWVSVVSLQLLLEALAGHLNEVPEDSVQALDVITRHLPSMRYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWNMMLNIDVSATAFYRAQPIIEFMCEVLDIQNINEQTKPLTDSQRVKFTKEIRGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLENGQAMECTVAQYFKQKYSLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLVKSNSMVGGPDPYLKEFGIVVHNEMTELTGRVLPAPMLQYGGRNKTVATPNQGVWDMRGKQFYAGIEIKVWAVACFAPQKQCREDLLKSFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFKHLKLTYVGLQLIVVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINAKLGGINNVLVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDGHPSRYCATVRVQTSRQETSQELLYSQEVIQDLTNMVRELLIQFYKSTRFKPTRIIYYRGGVSEGQMKQVAWPELIAIRKACISLEEDYRPGITYIVVQKRHHTRLFCADKTERVGKSGNVPAGTTVDSTITHPSEFDFYLCSHAGIQGTSRPSHYQVLWDDNCFTADELQLLTYQLCHTYVRCTRSVSIPAPAYYARLVAFRARYHLVDKDHDSAEGSHVSGQSNGRDPQALAKAVQIHHDTQHTMYFA"
misc_feature 270..524 /gene="AGO4" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 555..707 /gene="AGO4" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 708..1070 /gene="AGO4" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(864..866,909..911,951..953,963..965,1017..1019, 1038..1040,1044..1046) /gene="AGO4" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1209..2516 /gene="AGO4" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1620..1622,1632..1634,1668..1679,1686..1688, 1710..1712,1719..1721,1731..1733,1743..1745) /gene="AGO4" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(1824..1826,1830..1832,2070..2072,2484..2486) /gene="AGO4" /note="active site" /db_xref="CDD:240015" ORIGIN
gcagcctggtgctgtgtcacctgtggaggctgcagacttggtcctgtgcatcaagccacctccttgtgatcgagactgggcccccagcaagcctcttccagccaccccgacgcccaggcctgggaactgttgggaaacccatccgcctcctagccaaccatttccaggttcagatccccaagattgatgtttatcactatgatgtagatatcaaacctgagaaacgcccccgaagagtcaacagggaggtggtggataccatggtgaggcacttcaagatgcagatctttggtgatcggcagcccgggtatgatgggaaacgcaacatgtacactgcccaccccctcccgattggcagggacagagtggatatggaggtgacacttccaggagaagggaaggaccagacatttaaggtgtccattcagtgggtgtcagtcgtcagcctccagctgctgctggaagctctggcagggcacctgaatgaagttcctgaagattctgtgcaggcacttgatgtaatcacacggcaccttccctccatgaggtacactcctgtgggtcgctccttcttctccccccctgaaggttattaccaccctctgggtggtggcagggaggtctggtttggttttcaccagtcagtcaggcctgccatgtggaacatgatgctcaacattgatgtgtcagcaactgctttctatcgtgcccagcctatcattgagttcatgtgtgaggtcttggacattcagaacatcaatgaacaaaccaagcctcttacagactcccagcgtgtcaaatttaccaaagaaatcagaggtctaaaagtagaggttacccattgtggccagatgaagagaaaatacagagtctgcaatgtcactcggaggccagccagtcatcagacgtttcctctgcagctggaaaatgggcaggctatggagtgcacagtagctcagtattttaagcagaagtacagtctgcagctaaaatatcctcaccttccctgtctccaagtaggacaagaacagaaacacacatacttaccccttgaggtgtgcaacatcgtggcaggccagaggtgcatcaagaagctcacagacaatcagacctccaccatgatcaaagcaactgcaaggtctgcaccagacagacaggaggagatcagcagacttgtgaaaagtaacagcatggttggtggacctgatccctatctgaaggagtttggtattgttgtccataatgaaatgactgagttgacaggcagagttttgccagcaccaatgctgcaatatggaggcaggaacaagactgtggccacaccaaaccaaggcgtgtgggacatgagggggaaacagttctatgctggcattgagattaaagtttgggctgttgcctgttttgctcctcaaaaacaatgcagggaagacttactaaagagttttactgaccagctacgcaagatctccaaggatgcagggatgcccatccaaggccagccctgcttctgcaaatatgcccagggggcagacagtgtggagcccatgtttaaacacttaaaactgacttatgttggtctgcagctgatcgtggtgattctccctggaaagactcctgtgtatgctgaagtgaagagggttggtgacactctcctgggcatggccactcagtgtgttcaagtaaagaacgtggtaaaaacctctccacaaacgctgtccaacctgtgtctgaagataaatgcaaagcttggaggaatcaacaacgtccttgtacctcatcaaaggccctcagtgttccagcagccagtgatctttctgggagcagatgtcactcaccctccagctggggatgggaagaagccctccatagcagcagtggtgggcagcatggacgggcaccccagccggtactgtgccaccgtgcgggtccagacctcccgccaggaaacctcccaggagctgctctacagccaggaggtgatccaggacctgaccaacatggtgcgagaactattgatccagttttacaaatccacacgtttcaaacccacgaggatcatttactacagagggggagtgtcagaaggacagatgaagcaggtagcttggccagaactgatagcaatccggaaggcctgtattagtttggaagaagattatagaccaggaataacctacattgttgtgcagaaaaggcatcacaccagactattctgtgctgacaaaactgaaagggtgggcaagagcggcaacgtaccagcaggcactactgtggacagcaccatcacgcatccttctgaatttgacttttacctctgtagccatgcaggaattcagggaaccagccggccctcccactaccaggtgttgtgggatgacaactgtttcactgctgatgagctgcagctgttgacataccagctgtgccacacgtacgtccggtgtacgcggtcggtctctattccagcccctgcctactatgccaggctggtagcctttagggccaggtaccatctcgtggacaaggatcacgacagtgctgaaggcagccacgtgtcagggcagagcaatggccgtgatcctcaggctctggcaaaggcagtgcagatccaccacgacactcagcacacgatgtactttgcttgagagcatctgggaagatgaggccaaaccaacaacccgtgcagtcctgaactggtttgaatgcctactgctctagctagggcccggtttgtttcaggctgcccactaccagcagctctgaacagtcgcactgaatctgtgcttcacagcaatgtctgatgcaccaacacaattgagccatttgtttccttgttttatgtcatagaaatccatagactgtcttttctgatgcattggactgaatttttacctcaaagcgcaaaaggctgatcatcctgaagtttttaaaggacttggcacgaaaggtttctattgaatattttgctagctgtcgtttttaagttctcttctcatcccatgagcttatcatgacgactgattccctctctccaggcactgcttagtgagtatgcatattatggcaaaatgttttactccagttaaatgtaattgttctatcgtgtggggccatagattttttaatggagattttagacttcactactgtaaatgccttttaacagacataactttcacaggtattgcagttttttgtcagttttactaattatctttttaatctctgcagacttcggctgcaaagcaattgcactatactgcgagttcaaataggtggttcttgttctgtgaatgtgtaatataaccagatagtgatgcctgtcagtagattttaattataatggttacaaagaatgctgccatggtatcgtaacaagtactgaaccatcatttccccctctaaaaattataaaa
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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