2024-04-20 07:49:04, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_030443569 3953 bp mRNA linear VRT 18-AUG-2019 DEFINITION PREDICTED: Sparus aurata NRDE-2, necessary for RNA interference, domain containing (nrde2), mRNA. ACCESSION XM_030443569 VERSION XM_030443569.1 DBLINK BioProject: PRJNA558036 KEYWORDS RefSeq. SOURCE Sparus aurata (gilthead seabream) ORGANISM Sparus aurata Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Spariformes; Sparidae; Sparus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_044202.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Sparus aurata Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3953 /organism="Sparus aurata" /mol_type="mRNA" /db_xref="taxon:8175" /chromosome="16" gene 1..3953 /gene="nrde2" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 21 samples with support for all annotated introns" /db_xref="GeneID:115597547" CDS 54..3686 /gene="nrde2" /codon_start=1 /product="protein NRDE2 homolog" /protein_id="XP_030299429.1" /db_xref="GeneID:115597547" /translation="
MRHTIMALFPAFAEVECDKVDDSTKELDWLNNKSFQTGDALSLHSRYLEKNSERLNKKESSVGREVSSEEEQKEEGSVPSKRKKKKSEKKRKKKKKHKKKSGRYSSSGGSDSETIYPSDLKREEEGDRPQAAPLASRFSWLDDLHSPTEQPFCVDRKADTANWTYKSLYRGDVARYKRKGSSSLGLDPHKQGVSWEESESNKKHKGGDKKKAADRYFSTVSRQLLRSEPPVPTLPTIPDCSDAISPTSFLPLGDNEDNKVGETGDRVQTSSVNPLGVYDSSTALWLQGKGQQAQTEPQKQDTHAEKSAALLAGRTEEFNRRLREQPADTQLWIQFIRYQDELTATVFGMEEEQQGNDLSERSKSSHRAVLEKKLSIAERAVATNPSCVALQLERLRICQELWEPSLLTKEWKKLVFLHPNSAPLWKEYLLFTQSYFSNFTVSKVNSAYGKCLSTLSAVRDGSMVSHPALPGIEEDMLDIFTQQCHFLRQSGHSEKAISLFQAMIDFTFYKPDSVRELSTKQQVEFFEPFWDSGEARVGELGARGWKAWMLQQERGGWLQPSAEEEEDEEEDEEEVKDRSQPRHTIWLDVESSREAAHWLPWRPDKAKGQSEEDCEDPDRQVLFDDIGPSLICLSSPELQLRLLLRFLSFLGLPIDCVLSATPCQPGLLLENLSFLTQGNDLRHPLTSYDLPDLGVNSVGHMTTLQGTRKFAGLGKQGETFVTNVLNMLQPVVPAPHRATLSLSWMQYEKSKVLHCLYGSNKKRLRFQGKRSKRVSKQLLKEPDNRSSLVLWREYAHLEWLLGNLDEARKVFSTATVMGGTKGLKSPSLCELYLLWAQLEVEDGAGVQAGGITAVTVSPAVCVLTRLAEGTSSSSSSSSLSPSPVSILKARKSYEQALTAGLSALDPNLHNPQASRKGKEDLPRLRGLVGCYALFQYLTMGIQAANTIYNQARETMEALYQTLILDKQLNSNEEANLSSTGANQVAAASSHTSRLHVNRLAYECEAVAVQQAALLRYHNSISVFPLATLRQTLTSSLSTWPSSAPLWSIYVQVENRYHSAGRARRFFHSVTRNNSSVVPRLFAIFAEQQRKQLVDAALRSGFHDAALPILPENGLSNRVRGLFERTISTEMCSHCPLLWRMYMHFLLSDGQVDKAKGIFYKALQNIPWAKGLYMDGVQLFPQHLQEFVDLITEKELRLRLPLEELDILLED"
misc_feature 504..815 /gene="nrde2" /note="MTR4-interacting domain (MID) found in nuclear exosome regulator NRDE2 and similar proteins; Region: NRDE2_MID; cd22200" /db_xref="CDD:412062" misc_feature order(504..530,537..542,552..557,561..563,567..611, 618..626,630..638,672..680,690..695,699..704,711..731, 753..764,786..815) /gene="nrde2" /note="MTR4 binding site [polypeptide binding]; other site" /db_xref="CDD:412062" misc_feature 1002..1964 /gene="nrde2" /note="necessary for RNA interference; Region: NRDE-2; pfam08424" /db_xref="CDD:429988" ORIGIN
tttattttggtaaaccggccgtcacttgacgtcataatcctgcgactgtttatatgcgacataccatcatggctctgtttccagcttttgcagaagtagagtgtgacaaagttgacgattcgacgaaagaattagactggctgaataataagagttttcagactggagatgccctctctcttcacagtcggtatttggagaagaacagtgagaggctgaacaagaaggaatcaagtgtaggcagagaggtgagctctgaagaggagcagaaggaagagggtagtgtaccatccaagaggaagaaaaaaaagagtgagaagaagaggaaaaaaaagaaaaaacacaaaaagaagagtggaaggtattccagcagcggcgggtctgactctgaaaccatttatcccagtgaccttaaaagggaagaagagggcgacaggccccaggctgctccactagcaagtcgtttctcatggttggatgacctccactcgcccacagagcagccgttctgtgtggaccgtaaagcggacacagctaactggacgtacaagtccttgtacagaggggatgtagccaggtataagaggaaaggcagctcatccttgggtctggaccctcacaagcagggagtcagctgggaggagtcagagtcaaataagaaacacaaaggcggggacaagaagaaggcggcagacagatacttctctacagtcagtcgccagctgttgaggtctgagccccctgttcctacattacctacgattcctgactgcagtgatgccatcagccccacctccttcctcccactgggtgacaatgaggataacaaagtaggagagacgggtgacagagtgcagacatcatcagtaaaccccctgggtgtgtatgactcctctacggctctctggctgcaggggaagggacagcaggcgcagacagagccgcagaagcaggacacacacgcggagaagagtgctgcgctcttggctgggaggactgaagagtttaacaggcggctcagagagcagccggcagacacacagctatggatacaattcatacgataccaggatgagctgactgcaacagtgtttggaatggaggaggagcaacagggcaacgacttgtctgagcgctccaagtcctcccaccgagcagtcctggagaaaaagctgagcattgcagagcgcgctgtggccaccaacccaagctgcgtagctctgcaactggagaggctcaggatctgccaagagctctgggagccctcacttctgactaaagagtggaagaagctggtgttcctccacccaaacagtgcccccttgtggaaagagtatctactgttcacacagagctacttcagcaacttcactgtgtcgaaggtcaactctgcctatgggaagtgtctcagcacgcttagtgctgtgcgggatggcagcatggtctctcatccagccctgccagggattgaagaggatatgttggatatcttcactcaacagtgtcatttcctgcgacagtctggtcactcagaaaaggcaatttccctgtttcaggctatgatcgattttactttctacaaacctgacagtgtacgagaactgtccaccaaacagcaggttgagttctttgagccattttgggacagtggggaggccagggttggagagctgggggccagaggttggaaagcctggatgctccaacaagagcgaggaggttggctacagcccagtgcagaggaagaagaggatgaggaagaggatgaggaggaggttaaggatcggagccagcccagacatacaatctggttggatgtggagtcatctcgggaagcagctcactggctgccttggcggcctgacaaagctaagggccaatcagaagaggactgtgaggacccagacagacaggtgttgtttgatgacatcggtccctccctcatttgcctgtcttcaccagagctccagctccgtcttcttctccgtttcttgtcattccttgggctgcccattgactgcgtgctctctgccaccccctgtcagcctggtctgctgctagagaacctttcttttctcactcagggtaatgaccttcggcatcctctgacctcctatgacctacccgaccttggggtcaactctgtaggtcacatgaccactctccagggaacaaggaagtttgcggggctcgggaagcagggcgagacatttgtcaccaatgtgttaaatatgctccagcctgtagttcctgccccccaccgagccacgctgtcactcagctggatgcagtatgaaaaatccaaggtcttgcactgcctatacggcagcaacaaaaagcgtctccgctttcagggcaagagaagcaagcgggtttcaaagcagctactcaaagaacccgacaaccgctcgtcattggtgctatggcgggagtacgcccacctggagtggttactgggcaacctcgatgaggctcgcaaagtcttctccacggccacagtgatggggggaaccaaagggcttaagagccccagcctctgtgagctgtatctgctgtgggctcagctggaggtggaggacggagcaggtgtgcaagcaggaggaataactgcggtcaccgtgtccccagctgtatgtgtgctaaccaggctagcagaaggaacctcctcatcctcctcgtcatcctccctgtccccatctccggtttccatcctgaaagccaggaagtcatatgagcaagctctgactgcaggcttgtcagccctggacccaaacctccacaaccctcaggccagcagaaaaggtaaagaggacctgcccaggctgaggggcctggtaggctgctacgccttgttccagtacctcacgatgggcatccaagcagctaacaccatctacaaccaggctagagagacgatggaggcgttgtaccaaacactaatacttgataagcagctcaacagtaatgaggaagccaacctttctagcaccggtgctaaccaggttgcagctgcttccagccataccagcaggctccatgttaacaggctagcttatgagtgtgaggcagtagcagtgcagcaggcagcattgctaaggtaccacaatagcatcagtgtgtttccactggcaacgctgagacagacattgacctcttccctctccacctggcccagcagcgcccctctctggagcatatatgtacaggtagagaaccgttaccatagtgctggccgggcacgtcgtttttttcactctgtaaccaggaacaacagcagtgtggtaccacgcctctttgccatttttgctgaacaacaaaggaagcagctggtggatgctgctctgaggtctggtttccatgatgctgcccttcctatcttgcctgaaaatggcctcagcaaccgtgtccgtggactgtttgaaagaaccatatcaacagagatgtgttctcactgtcctttactttggaggatgtacatgcacttcctgttgtctgatgggcaggtggataaagccaaagggatcttctacaaggccttacagaacattccctgggctaagggtttgtacatggacggagtgcagctgttccctcagcatctgcaggagtttgtagatcttataacagagaaggaactccgactcagactgcctttagaggaactggatatactactggaggactgaacactgtatacacgtgtatacacacacctcattcaagaacttcagcccacatagtggcatgtttgatgtcaacaagaagatacagatgcgaaaactctgatgcgtacacacatagccgcagtgttaaacagttaagtttcagtgatgttattaaagatgggcatggagctatccttcggactttatgtatattgttttattttcacagaaaaccaccagctctgtgttttaataccagatacagtcaataaatatgtctctctattc
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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