LOCUS       XM_030330143            5178 bp    mRNA    linear   MAM 09-SEP-2020
DEFINITION  PREDICTED: Lynx canadensis testis and ovary specific PAZ domain
            containing 1 (TOPAZ1), mRNA.
ACCESSION   XM_030330143
VERSION     XM_030330143.1
DBLINK      BioProject: PRJNA558991
KEYWORDS    RefSeq.
SOURCE      Lynx canadensis (Canada lynx)
  ORGANISM  Lynx canadensis
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae;
            Felinae; Lynx.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_044311.2) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Lynx canadensis Annotation Release
                                           102
            Annotation Version          :: 102
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.5
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5178
                     /organism="Lynx canadensis"
                     /mol_type="mRNA"
                     /isolate="LIC74"
                     /db_xref="taxon:61383"
                     /chromosome="C2"
                     /sex="male"
                     /tissue_type="muscle, distal limb"
                     /country="USA: Aroostook County, Maine"
                     /lat_lon="42.2466 N 71.6746 W"
                     /collection_date="2017-12-05"
                     /collected_by="Tanya Lama"
     gene            1..5178
                     /gene="TOPAZ1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins, and 87% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:115523877"
     CDS             1..4980
                     /gene="TOPAZ1"
                     /codon_start=1
                     /product="protein TOPAZ1"
                     /protein_id="XP_030186003.1"
                     /db_xref="GeneID:115523877"
                     /translation="

MRPPLPSGPAAAPGREGDSRGLRKRGRRPGPGEAGSCGPEATGREESGQKRRMVARASGREEVESDKSAKEKRKVTEASSHDPQPGIDLVRKESLTSLESFQTVECSEFQSMAFLQSLGKESLVEGIKRRIQIKKLKSLESPPLKITDSKATQNIKVEFQDELYKNTPKYSCNSLSPGVENNSILKLHDYNFFPHSKGCNDGNNLAYKPHGGCMHVPENSSKLKKENLRSLADKSDTNNIPQLLQTEENLMGVNRLLFEEADLHQSKINGLLSCLQNEKNKYSIEENNIGRKPRKRMKVSEKGNEMVIEMNCCNVYNKSELVLQDNQTGAEGKGAETLEAKKSPLKVLRKVNHNTLSPMDHLLSLPEIGKKTSPEHHVNAMFQKTLEPLVEEETKNTPEPLGFKGMEPEEYFKSMQSSVVKLSSDCHLTEKRSSQEDLRNEAEESKSGCHRTIPMTGKRTWPCYSCARISAQCWKKSSLPDSNNFLPGSQQSFRQDDFLKHQTNQTHLIDSKLSLQSTITKTNGESSSKEKLNSNLNCLSSVSAVEPTLTIIKEPTMDDGKKMKSEEWSRSGSEVVSNTDEDTPLTNVTQNLTGSKKKDRGNLTKLNLTVASQDGQEANNSLGKTIHRKACIAKQTLVVPDLVKILNTGRLTNFKIPLLKNKTEKRKEINARSSERDAYSPLELLDNLSGAEVRQSRSKENVSTVTSGPQSLSLQNSVTPVQADSDSCTCKNSCGVSPNFLKESNDTKPSNCISEPGNIISNKEAVSLTIERNSFSCDLGCMEKSCASSNKQETFKPVFSEVSGREMTKNFSEIKMGFPDILKAYEDDVLLIDVIQDDPDLFGVSNEGELSFTSEVPMISQEPIVAEEHQSTDSKHVELPEKKETSDDLRELPVPDSGLMKSEVCASLSAANEIKHDSKGENISLGEITNETSESENLEDFSEHIKSSDLDEKHTFSEEVTIKEEKENIFEVCKSKDPKNSEMVGECQLSTLAPKPLCLSVPPLNLNAHQEDILLKPWMNDFRFPGKHSLLKLQNPETCEIFKREKNVGVFQKPLGLMLPHRYCKFHFNTLRGCERSQCKFAHVPEQGDEKVCMDVFKKYISINELCLLQRAVNMFMEYYRKFPPGIHFDLQVLNDLLNSLLKHCLLKEVFQVVNLSIMVKMLPALKILLKIFEHVATMKLRNAVPALIDIFCKFVEVGMVFDPEHFNYIIKLLYQLQASQQEITAVLEMKSRLRMRQFKQNWKCDLDSALNEIQHCKEKGDWTKLGNLYINIKMSCGNFADFQRFCACIAETLTQNCKEERPGIPFCEFAETVSKDPQNSEVDKTLLGRIGISAMYFYHKLLQWAKGRKVLDKLYELKIHFTTLKGLTGPEKLAPRCQIVNIAAEIFLKSGSLDGAIWVLRESEWIINTPLWPCDRLDVLNRHNLLCTIAHEILAKSLYRQTFEVLQNLPGFQNSQETVEVSQYSLLFNKLLDACIESNSLGMSSSVADFMISKNIPIELSFLRRLITSLGRSCLWLKARTHYKSALSLGCYPPLEGNLYRKLLLIPSYLSEIEMLLAIEIFLVSNASSIQSPGTSTQMLQIVLKRCEEDKSRSKDDYQAAVERLIMAARISDPKLFIKHMTVNVNKEQVYSLEHCSALKWLKDNMKWAGKVWLFNNH"

     misc_feature    3760..4287
                     /gene="TOPAZ1"
                     /note="Putative aspartate racemase; Region:
                     Asp_Glu_race_2; pfam14669"
                     /db_xref="CDD:434113"
ORIGIN      

atgcggccgccgctgccctcgggccccgcggcggcccccgggcgtgaaggcgactcgcgaggcctgaggaagcgaggccggcggccagggccaggcgaagcgggaagttgtggccctgaggccacgggacgcgaggagagcgggcagaagaggagaatggtggcccgagcgtctgggagagaagaggtggaaagtgacaagtcggccaaggaaaaaagaaaagtcactgaagcttcaagtcatgatccacagccagggattgacctggtaagaaaggaatcattaaccagtttggaatctttccaaacagtggagtgcagtgaatttcaaagtatggctttcttgcagtctttgggtaaggagagtttggtagaaggtattaaaagaagaattcaaattaaaaaacttaaaagcttagagagcccacctctcaaaataactgacagtaaggctacacaaaatattaaggttgaattccaagatgaactgtacaagaatactccaaaatattcttgtaacagcttgtcacctggagtagaaaataattccattttaaaattacatgattacaattttttcccccattccaagggttgtaatgatggaaataaccttgcatataaacctcatggtggatgtatgcacgttccagaaaattcctcgaagttaaagaaagaaaacctcaggagtcttgcagataagagtgacacaaataatattccccagctcttacagactgaagaaaacttaatgggagtaaataggttattatttgaagaagctgatttacaccaaagtaaaattaatggcttgctttcctgccttcaaaatgaaaaaaataaatattcaatagaggagaacaatattgggagaaaacccaggaaaaggatgaaagtgtctgaaaaaggaaatgaaatggttattgagatgaactgctgtaatgtgtataacaaatctgaattggtgttacaagacaaccaaacaggtgctgagggcaaaggagcagagactttagaggctaaaaaaagtcctttaaaagttttgagaaaagtaaaccataatacactctccccaatggatcatttattaagtcttccagaaataggaaaaaaaacaagtcctgaacatcatgtaaatgctatgtttcagaaaacccttgagccacttgtggaagaagaaacaaagaacactccagagcccttaggatttaaaggcatggagccggaagagtattttaagtcaatgcaaagctcagtagtgaaattatctagtgattgccatcttactgaaaagagatcttcacaggaagacttgagaaatgaagctgaagaatcgaagtcaggctgtcacagaacaataccgatgactggtaaaagaacttggccttgttattcatgtgctagaatatctgcccagtgttggaaaaagtcttccttgccagattcaaataactttcttcctgggtctcagcaaagttttaggcaagatgattttcttaaacaccaaacaaatcaaactcacttaattgattctaaattatcattacagagtaccataacaaaaacaaatggtgaatcttcaagcaaagaaaaattgaattctaatttaaattgtttgtcttcagtctctgcagtagagcctactttgacgattataaaggaacctacaatggatgatggtaaaaagatgaagtcagaggaatggagcagaagtgggtcagaggtagtttctaatactgatgaagatactccgctaactaatgtgactcaaaacttaacaggaagtaaaaaaaaagatagagggaatttaacaaaacttaatttgacagtggcttcacaggatggccaggaagcaaataactctctaggcaaaacgattcatcgaaaagcatgcattgctaagcaaacacttgtggttccagacttggttaaaatattgaacacaggaagactgactaattttaaaattccattacttaagaataaaacagaaaaaagaaaagaaataaatgccaggtcatcagagagagatgcatatagtcccctagaacttcttgacaatttatctggagcagaggtaagacaaagtaggagtaaagaaaatgtctccacagtaacatcgggacctcagtctttgagtctacaaaatagtgtaactccagtgcaagctgattctgactcatgcacgtgtaagaattcctgtggtgtttctccaaactttttaaaggaaagcaatgatactaaaccatctaactgcatctctgaaccaggcaatattatttctaataaggaagctgtttctctcacaattgaaagaaatagtttttcttgtgatcttgggtgtatggagaaaagttgtgcctcctctaataaacaagaaacattcaaaccagttttctctgaagttagtggtagagaaatgactaagaacttttcagaaattaaaatggggtttccagatattctgaaagcatatgaagatgatgtcctcttaattgatgtcattcaagatgacccagatctctttggggtctccaatgaaggggagctctcatttacttcagaggtccctatgataagccaggagcccattgttgctgaagagcaccaatcaacagactctaagcacgtggaacttccagaaaaaaaagaaacaagtgatgacttgagagaacttcctgtaccggattcaggattgatgaagtcagaggtctgtgcttccttgtcagcagcaaatgagataaaacatgattccaaaggtgaaaacatttccctaggggaaattactaatgagacctctgaaagtgaaaatctggaagacttcagtgaacacataaaaagttcagacttggatgaaaagcatacattttcagaagaggtgactattaaagaagaaaaagaaaatatttttgaagtttgcaaaagcaaagatcctaaaaattcagagatggttggtgaatgtcagttatcaacattggcccccaaacctctgtgcttatcagtgccacctttgaatctaaatgctcatcaagaagacatattactgaagccctggatgaatgatttcagatttccaggaaaacattctctcttaaagctgcagaatcctgaaacttgtgaaatatttaagagggaaaaaaatgtaggggtgttccagaagcccctagggttgatgctaccccatagatactgcaaatttcattttaatacattacgtggctgtgagcgatcgcaatgcaagtttgctcatgtgcctgagcaaggggatgaaaaggtttgtatggatgtgtttaagaaatatataagcatcaacgagctgtgtttgctacaacgtgcagtaaacatgtttatggagtactacagaaagtttcctccaggtatacactttgatttacaagtgctaaatgaccttctaaattctttactcaaacattgtttattgaaagaagtatttcaggtagtgaacctcagcataatggttaaaatgctgcctgctctgaaaatattactaaaaatatttgagcatgtggcaactatgaaattaaggaatgctgtacctgctttaattgatatattttgtaagtttgttgaagttgggatggtgtttgacccagaacactttaactatatcatcaagctcttataccaactacaggcttcccaacaagaaataactgcagttctggaaatgaaatccaggttacggatgaggcaatttaaacagaactggaaatgtgatttagattcagccttgaatgaaatacagcattgtaaagaaaaaggtgactggaccaaattgggaaatttatacattaacataaaaatgagctgtggaaactttgcagatttccagagattttgtgcttgtattgctgaaacactaacacaaaactgtaaagaagagagaccaggcattccattttgtgaatttgctgaaacagttagcaaagatccacaaaatagtgaagtagataaaactttgctgggaagaattggaatcagtgctatgtacttctatcacaagctgttgcagtgggccaagggaaggaaggtcttagataaactatatgaattgaaaatacattttacaactttaaaaggacttacagggcctgagaagttagcaccaagatgtcaaattgtgaatattgcagcagaaatttttctaaaaagtggaagcctagatggtgccatttgggtattgagggaatcagaatggatcatcaatacaccactgtggccttgtgatagactggatgtactcaatcgacataatctgctctgtacaattgcacatgaaatcttagccaagagcctttatagacagacatttgaagttttgcaaaatctaccaggttttcaaaattctcaagaaactgtggaggtctcacagtacagccttctttttaataaacttctagatgcctgtatagaaagcaacagtcttggtatgtcatcctccgtggcagacttcatgatttcaaagaacatccctattgagctctcctttcttagaagattaattacttctttgggaaggagttgtttatggctcaaagccagaacccactacaaaagtgctctttcattgggttgctatccaccattggagggaaatttataccgaaaacttctactgattccttcttatttatctgagattgaaatgcttttagctattgaaatcttcctggtatctaatgctagtagtattcagagtcctggaacttctacacagatgctgcagatagttttgaaaagatgtgaagaagacaaatctcggagtaaggatgattatcaagctgcagtggaaagactaattatggctgctcgtatatcggacccaaagctcttcattaagcacatgaccgtcaatgttaataaggaacaggtttatagtttggaacattgttctgccctgaaatggttgaaagataatatgaagtgggctggaaaggtttggcttttcaataaccattagttaataaaggctttttttttttttaagttcaagtaatcattgttgaaaataaaaggcaataaaagtaaagacaattttcactatattcagcttttgccctttattggtttatagtaagttaatagtttccaaacagtgccagagaccagctccagcaaccaggggttcccgaaggaagaacagtgtcggtgaaaataa

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