2024-04-18 14:18:52, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_030309852 5723 bp mRNA linear MAM 09-SEP-2020 DEFINITION PREDICTED: Lynx canadensis ATPase copper transporting beta (ATP7B), transcript variant X2, mRNA. ACCESSION XM_030309852 VERSION XM_030309852.1 DBLINK BioProject: PRJNA558991 KEYWORDS RefSeq. SOURCE Lynx canadensis (Canada lynx) ORGANISM Lynx canadensis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae; Felinae; Lynx. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_044303.2) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Lynx canadensis Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.5 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5723 /organism="Lynx canadensis" /mol_type="mRNA" /isolate="LIC74" /db_xref="taxon:61383" /chromosome="A1" /sex="male" /tissue_type="muscle, distal limb" /country="USA: Aroostook County, Maine" /lat_lon="42.2466 N 71.6746 W" /collection_date="2017-12-05" /collected_by="Tanya Lama" gene 1..5723 /gene="ATP7B" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns" /db_xref="GeneID:115510217" CDS 1..4611 /gene="ATP7B" /codon_start=1 /product="copper-transporting ATPase 2 isoform X2" /protein_id="XP_030165712.1" /db_xref="GeneID:115510217" /translation="
MVGKGVTVDTAMEKAGGDTPGSPEPSFLATLGDPQVTLVSVHKRWSFRRNPGTGGSTRPVTSEEEGEFSQKVLNGTRGIRSNQILSKHSLPARVWEPAMQQKQSFAFDNVGYEGGLDSVCPSQTTTGTISISGMTCQSCVKSIEGRISSLKGIVSIKVSLEQGSATVIYVPSVLSLPQVCRHVEDMGFEASITEGKAASWPSRSSSALEATVKLRVEGMTCQSCVSSIEGRLGKLQGVVRARVSLGTQEAVITYQPYLIQPQDLRDHVNDMGFEAVIKNRVAPVSLGPIDIGRLQRTNPKTPLTSGTQNLNNSETLGHQGSRVVTLQLRVDGMHCKSCVLNIEENIGQLPGVQSIQVSLENRIAQVQFDPSRVTPGALQRAIEALPPGNFQVSLPDGAAGSGTDNRPSTHLASAPAPAPAQGTRMQGLGSTVVLAIGGMTCASCVQSIEGLLSRREGVRRVSVSLTEGTGVVLYDPSVINPEGLRAAVEEMGFKASVVSENCYSNHVGNRSTGNSTVHTTAGGPVSVQGMAPHAGGLPKNHNPGSSSKSPQASTAVAPRKCFLQITGMTCASCVSNIERNLQKEAGILSVLVALMAGKAEVKYNPEVIQPLEIAQLIQDLGFEASVMENYTGSDGDLELIITGMTCASCVHNIESKLTRTNGITYASVALATSKAHVKFDPEMIGPRDIVKIIEEIGFHASPAQRNPNVHHLDHKVEIKQWKKSFLCSLMFGIPVMGLMIYMLVPSNEPHETMVLDHNIVPGLSILNLIFFILCTFVQLLGGWYFYIQAYRSLRHGAANMDVLIVLATSIAYTYSVIILVVAVAEKAERSPVTFFDTPPMLFVFIALGRWLEHVAKSKTSEALAKLMSLQATEATVVTLGEDNLIIREEQVPMELVQRGDVIKVVPGGKFPVDGKVLEGSTMADESLITGEAMPVTKKPGSTVIAGSINAHGSVLINATHVGNDTTLAQIVKLVEEAQMSKAPIQQLADRFSGYFVPFIIIISTLTLVVWIIIGFIDFGVVQKYFPTPNKHISQTEVIIRFAFQTSITVLCIACPCSLGLATPTAVMVGTGVAAQNGILIKGGKPLEMAHKIKTVMFDKTGTITHGVPKVMRVLLLVDVATLPLRKVLAVVGTAEASSEHPLGVAVTKYCKEELGTETLGYCTDFQAVPGCGIGCKVSNVEGILAHGKRQWSTQAGVSNGVGGVPEETDATPQTFSVLIGNREWMRRNGLTISSDISDTMTDHEMKGQTAILVAIDGVLCGMIAIADAVKQEAALAVHTLKSMGVDVVLITGDNRKTARAIATQVGINKVFAEVLPSHKVAKVQELQNEGKRVAMVGDGVNDSPALARADVGIAIGTGTDVAIEAADVVLIRNDLLDVVASIHLSKRTVWRVRLNLVLALIYNLIGIPIAAGVFMPIGIVLQPWMGSAAMAASSVSVVLSSLQLKCYKKPDLERYEAQAQGRMKPLTASQVSVHVGMDDRRRDSPRATPWDQVSYISQVSLSSLKSDRLSRHSAGADDNGDKWSLLLNDRDEEQCI"
misc_feature 382..573 /gene="ATP7B" /note="Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371" /db_xref="CDD:238219" misc_feature order(400..408,415..417) /gene="ATP7B" /note="metal-binding site [ion binding]" /db_xref="CDD:238219" misc_feature 637..825 /gene="ATP7B" /note="Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371" /db_xref="CDD:238219" misc_feature order(655..663,670..672) /gene="ATP7B" /note="metal-binding site [ion binding]" /db_xref="CDD:238219" misc_feature 979..1155 /gene="ATP7B" /note="Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371" /db_xref="CDD:238219" misc_feature order(997..1005,1012..1014) /gene="ATP7B" /note="metal-binding site [ion binding]" /db_xref="CDD:238219" misc_feature 1297..1488 /gene="ATP7B" /note="Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371" /db_xref="CDD:238219" misc_feature order(1315..1323,1330..1332) /gene="ATP7B" /note="metal-binding site [ion binding]" /db_xref="CDD:238219" misc_feature 1687..1875 /gene="ATP7B" /note="Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371" /db_xref="CDD:238219" misc_feature order(1702..1710,1717..1719) /gene="ATP7B" /note="metal-binding site [ion binding]" /db_xref="CDD:238219" misc_feature 1912..2103 /gene="ATP7B" /note="Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371" /db_xref="CDD:238219" misc_feature order(1930..1938,1945..1947) /gene="ATP7B" /note="metal-binding site [ion binding]" /db_xref="CDD:238219" misc_feature 2167..4275 /gene="ATP7B" /note="P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B; Region: P-type_ATPase_Cu-like; cd02094" /db_xref="CDD:319783" misc_feature order(3160..3162,3166..3168,4204..4206) /gene="ATP7B" /note="putative Cu binding site [ion binding]; other site" /db_xref="CDD:319783" misc_feature order(3292..3300,3502..3504,3655..3663,3751..3753, 3871..3879,3937..3939,3946..3948,3955..3957,4012..4014, 4021..4023) /gene="ATP7B" /note="putative ATP binding site [chemical binding]; other site" /db_xref="CDD:319783" ORIGIN
atggtgggtaaaggtgtgaccgtggacacagcgatggagaaagccgggggtgacacgcccgggagccctgagccgtccttcctggcgactctgggtgacccacaggtgaccctcgtgtccgtccacaagcggtggtccttcaggaggaatcctgggaccgggggctccaccaggccagtgacttcggaggaggaaggagagttttcacagaaggttttgaatggaacacggggaatccgttccaatcagatcctgtctaaacattctttgcccgctcgtgtctgggagccagcaatgcagcagaagcagagtttcgcctttgacaatgttggctacgagggtggtctggacagcgtgtgcccctctcagacgaccaccggcaccatcagcatttcgggcatgacttgccagtcgtgtgtaaagtctatcgagggcaggatttcgagtttgaaaggcatcgtgagcattaaggtttccctggaacaaggcagcgcgactgtgatctatgtgccgtcggtcctgagcctgccgcaggtttgccgtcacgtcgaggacatgggcttcgaggccagcatcacagaaggaaaggccgcctcctggccctcgagatcctcgtctgccctggaggccacggtcaagctccgggtggagggcatgacctgccagtcctgtgtcagctccatcgaaggcaggctggggaagctgcaaggggtagtgagggcccgagtctcccttggcacccaggaggcagtcattacttaccagccttatctcattcagccccaagacctcagggaccacgtaaatgacatgggatttgaagctgtcatcaagaacagagtggcacctgtaagcctgggaccaattgatattgggcggttacagaggaccaacccaaagacccctttgacgtctggtacccagaatctcaataactctgagaccttggggcaccaagggagccgtgtggtcaccctgcaactgagagtagatggaatgcactgtaaatcttgtgtcctgaatattgaagaaaatataggccaactcccaggggttcaaagtattcaagtgtccttggagaacagaattgcccaagtacagtttgacccttctcgtgtcacccccggggccctgcagagggccattgaggctcttcctcctgggaactttcaagtttctcttcctgatggagcagcggggagtggcaccgataacaggccttccacgcatctcgcctccgcccccgcccccgcccctgcccagggaacccggatgcaaggcctgggcagtaccgtggtgcttgccattggtggcatgacctgtgcgtcctgcgtccagtccatcgaaggcctgctctcccgcagggaaggggtgcgacgagtatcagtctctctgactgaagggactggagtggtgctctatgatccctctgtaattaacccggaaggactccgagctgctgttgaagaaatgggattcaaggcgtcagtcgtttctgaaaactgttacagcaaccatgttggaaaccgcagcacaggtaattccacagtgcacaccacagctggcggacctgtgtctgtgcagggaatggctccccatgctggggggctccctaagaaccacaaccccggcagctcgtcaaagtccccgcaggcctctacagcagtggcaccacggaagtgctttttacagatcacaggcatgacctgtgcatcctgtgtgtctaacatagagagaaaccttcagaaagaggcaggtattctctcggtgctggtcgccttgatggctggaaaggcagaggttaagtacaatccggaagtcatccagccgctggagatagctcagctcatccaggacttgggctttgaggcttcggtaatggaaaactacacaggctcagatggtgacctcgagctgatcatcacgggcatgacctgtgcatcctgtgttcacaacatagagtccaaactcaccagaacgaacggcatcacctacgcctctgtggcccttgccaccagcaaagcccacgtgaaatttgatcctgaaatgattggtccgcgggatattgtcaagattatcgaggaaatcggctttcatgcctccccggcccagagaaaccccaacgtgcatcacttggaccacaaggtggagataaagcagtggaagaagtcttttctgtgcagcctgatgtttggcatccctgttatgggtttaatgatctatatgttggtgcccagcaacgagccccacgagacaatggtcctggaccacaacatcgttccaggactgtccattctaaatctcatcttctttatcctgtgcaccttcgtccagctccttggcgggtggtacttctacatccaggcctacagatctctgcggcacggggcggccaacatggacgtgctcatcgtgctggccacgagcatcgcctatacctactcagtcatcatcctggtggtggccgtggctgagaaggcggagagaagccccgtgaccttctttgacaccccccccatgctctttgtgttcattgccctgggccggtggctggaacacgtggcgaagagcaaaacctcagaagcccttgccaaactcatgtctctccaagccacggaagccaccgttgtgacccttggcgaggacaacttgatcatcagagaggagcaagtacccatggagctggtgcagcggggcgacgtcatcaaggtcgtccccggcggaaagttcccggtggacgggaaagtcctggaaggcagtaccatggctgacgagtccctcatcacaggagaagccatgcctgtcactaagaaacccggaagcacagtgattgctgggtctataaacgcacatggctctgtgctcattaacgccacccacgtgggcaatgacaccactttggctcagattgtgaaattagtagaagaggctcagatgtcaaaggcacccattcagcaactggctgaccggtttagtggatattttgtcccatttatcatcatcatttcaacgttgacgttggtggtatggattataatcggttttatcgattttggtgttgttcagaaatactttcctacccccaacaagcacatctcccagacagaggtgatcatccggtttgcgttccagacatccatcacggtgctctgcattgcgtgcccctgctcgctgggcttggccacacccacggcggtcatggtgggcaccggggtggccgcccagaatggcatcctcatcaagggaggcaagcctctggaaatggcccacaagataaagactgtgatgtttgacaaaactggcaccattacccacggggtccccaaggtcatgagggtcctcctgctcgtggatgtggccacgctgcccctcaggaaggttcttgctgtggtggggactgcggaggccagcagcgagcaccccctgggtgtggcagtcaccaagtactgtaaagaggagctgggaacagagaccctggggtactgcacagacttccaggcggtgccaggctgcggaattggctgtaaagtcagcaacgtggagggcatcctggcccacggcaagcgccagtggagcacacaggctggggtctcgaacggcgttggcggtgtccctgaggagacagatgcaaccccccagaccttctctgtgctgattgggaaccgcgaatggatgaggcgcaacggcttaaccatttccagcgacatcagtgacactatgacagatcacgagatgaaaggccagacagccatcctggtggccattgatggcgtgctctgcgggatgattgccatcgcggatgctgtcaagcaggaggcagccctggccgtgcacacgctgaagagcatgggcgtggatgtggttctgatcactggggacaaccggaagacggccagagccattgccacccaggttggcatcaacaaagtctttgcagaggtgctgccttctcacaaggtggccaaggtccaggagctccagaatgaagggaagagagtcgccatggtgggagatggggtcaacgactcgccggccttggcccgggccgacgtgggcattgccatcgggacaggcacagatgtcgccattgaggctgctgatgttgtcctcatcagaaacgacttgctcgacgtggtggcgagcattcacctctccaagaggaccgtctggagagtacgactcaatctggtgctggcattgatttataatctgatcgggatacccatcgcggcaggggtcttcatgcccatcggcatcgtgctacagccgtggatgggctcagcggccatggcggcctcctccgtgtctgtggttctctcgtcgctgcaactcaagtgctataagaagcccgacctggagaggtatgaggcccaggcccagggccgcatgaagcccctgactgcgtcccaggtcagcgtgcacgttggcatggatgaccggcgacgggactcaccgagggccacgccctgggaccaggtcagctacatcagccaggtgtctctgtcctcactgaagtcggacaggctgtctcggcacagtgctggggctgacgacaatggggacaaatggtctctgctcctgaatgacagagatgaggagcagtgcatctgaaagctccgggcggggacggtcccggggctcgatctccttgctgaatagtcgggccggctttcctggtagacggggctcgggctggtcaagtgtggcaccagcagcaagacggatgaggctcctgtccggcctcggggacttccgctccctggacattcctggtcatctctcctagcacgtgccgcatccagacgtggcccctgggtcggcccaccctgcctagatcccactagcacagggaccaggcatcctggccagaccctgctgttggcacgggcttatcgggaacgtggctggactctcgcagaggaggggacagccagccctccacacaggcctctgcttttgtgtttgggatgattgcttgtaaaaggaccaaaaacttggctgggcctttccttaaaactcatgaaaagccatgagtttttacaagacccccatgcatcgagtatctgagaccgcagtttacctcaaatgcaccccattgacttctgccggcacggtctcttccttttctgttcttcacactggggatgtgccgcccccccccccaagccctgcccgggctctgagggcatggctgatgccgtagtgatccctgctgctgctcccgggcacctctgccagactctgctccctcacatgcttggccggagagcctgccgtgcttctcttcaggtcgaggagagttttctttctcgctagtgtgccgcttggccacagagtcctggccacgtgctcagcggccacggtggcctcctccgtgtctgtggttctctcattgctgcagctcaagtggtgagtcccgtggggcgggagcgtgcaccacaggcggcacccactgggctgtctcccccacagaatggcctgctgttgtggattgtcgctgccccactggagggagggtctcagagcctgagacctgagaaattctgctccctgtggggtccaggcacccgggaccctgggaggcctgtggtgcttgaaatgggtgtcccacggggaggtgtgtgcgctcacaggaacctccttgcaggcctccgggagcttcagattacatggtctgctgcgtgaccgtcacctcgtggcattcattcagaactcctgccagg
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@meso_cacase at
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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