2024-04-26 17:59:05, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_030214749 6053 bp mRNA linear VRT 03-AUG-2019 DEFINITION PREDICTED: Microcaecilia unicolor NRDE-2, necessary for RNA interference, domain containing (NRDE2), transcript variant X1, mRNA. ACCESSION XM_030214749 VERSION XM_030214749.1 DBLINK BioProject: PRJNA556662 KEYWORDS RefSeq. SOURCE Microcaecilia unicolor ORGANISM Microcaecilia unicolor Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Gymnophiona; Siphonopidae; Microcaecilia. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_044039.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Microcaecilia unicolor Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6053 /organism="Microcaecilia unicolor" /mol_type="mRNA" /db_xref="taxon:1415580" /chromosome="9" gene 1..6053 /gene="NRDE2" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns" /db_xref="GeneID:115477700" CDS 116..3592 /gene="NRDE2" /codon_start=1 /product="protein NRDE2 homolog" /protein_id="XP_030070609.1" /db_xref="GeneID:115477700" /translation="
MALFPAFAELASDSGTAGDSGKRGAELDWLSNQSFRSTEAETQHNQILQTIDPAPTPLPRSPLRFDVTEESDAGEGIKKSTRKKKKKKHGHIKRKKKKTDLRSSESSSETDHAKDDKKDNAGELERGSQKPEQSSKLSDGAKIWFEDIEPVNGETFRIDKKPDPANWEYKSLYRAHIARYKRKGNSCLGINPKKQCISWEDSATDKKPLRKRTERYFTKNGVQVLAANGTPVYNRTQATPLGDSTLVPLLVGDEDGETACPSTAWVNPLGVYDVSTTLWLQGKGVPESEAKHPASSEDLSNTLKAKVEEFNRRLRENPEDVQAWMAFVEFQDELMKGPSMYTIDEKELESRRKSLKLILEKKLSILDRAIESNPHRVELKLARLKLCEELWEPAVLLKEWQKLVFLHPNDAALWQKYLLFSQSQFSTFSVSKVLSIYGKCLSTLAAVRDGSMVSHPLLPGTEEAMFGIFLQQCHFLRQAGQSEKAISLFQAMSDFTFFKPDSVTDMSTKRQVEFFEPFWDSGEPRFGEKGAKGWNAWMRQQERGGWVVVNNFGEEEEEENAEDDPEIKDKTCPRWRLWLEVECAREAKHWLPWKPDKAKGQSEEDCEDPERQVLFDELGPSLFRISSPELKFQLMRAFLQFLGVPCGHSLPVSCLYLAMDENSIFDCGNSSERPLTPFDCPFSGVGILGHMDTLVSGRRQTGHCKEGEAFLQNIFQLAQTCFSGEEKSHFSVCWLQYEIAKVAWYLQVKDKKHLKSQGKKSKKLAKHLLKEAENRNNLSLWKEYAFLEWLLGNVDESRKVFDTAISMGGSGGVKNWGLLNLCLLYAELEVGLLNTLEGAISSRAVHVLTKLADNGPYAPYNGQVLSVSILKVRKVYEHAVQDCLPESLSSGLGKSRIHLVSLVGCFALFQYLTVGVDAAVQIFKLFTDKRSSVGVLKAGELDDGKSSSWAALETLSVMQTNLLRHHLKMGVHPLNPLRETLRETLTLYPGNQLLWKSYVEVESKSHNASKARKFFDHVRRSTMCLEPWLFAIQAEQARKRLVETVQRKDAGEIHATIPETGLTNRIKALFEHAIGSQQGAHCPLLWRIYLHFMVSLGNKERSKGLFYKALQSCPWAKVLYLDAVEYFPSELQEILDLMTEKELRVRVPLEELDLLLED"
misc_feature 578..>790 /gene="NRDE2" /note="MTR4-interacting domain (MID) found in nuclear exosome regulator NRDE2 and similar proteins; Region: NRDE2_MID; cd22200" /db_xref="CDD:412062" misc_feature 1040..2044 /gene="NRDE2" /note="necessary for RNA interference; Region: NRDE-2; pfam08424" /db_xref="CDD:429988" ORIGIN
taaaaacaaacctccttgcgggcagaaacggctctggaggacgcttcccggcatccgcagcgaccggtagtgacgtttttgttttgctgttgtgtgtagaaaagtcaagtccatcatggctctgttcccggcttttgcggagctcgcgagtgatagcggaaccgccggtgacagcggaaagagaggtgcagagttggactggttgagcaaccaaagctttcgaagcacagaagcagaaacacagcacaatcaaatattgcagactatagatcctgcaccaactccgctccccaggagtcctttaaggtttgatgtgacagaagaaagtgatgcaggtgaagggatcaaaaaatcaaccaggaaaaagaagaagaaaaaacatgggcatatcaagagaaaaaagaaaaagacagatctgaggagtagcgagtcaagctcggagacagaccacgcaaaggatgacaagaaagataatgccggggagttggagagaggatcccaaaaaccagaacagagcagtaaattatcagatggtgccaaaatttggttcgaggatattgaacctgtgaatggcgagaccttcagaattgataagaagcctgaccctgctaattgggaatacaagtccctctaccgagcacatatagcaaggtataaaaggaaagggaactcctgtcttggtattaatccaaaaaagcaatgtataagttgggaagactctgctactgacaagaaaccgctccggaagcggacagagcgctacttcactaaaaatggggtgcaggtactcgcagcaaatgggactccagtgtataacagaacccaggctaccccccttggagacagcacactcgtaccgctcctggtaggggacgaggatggggagactgcctgtccttccactgcctgggttaatcccctgggagtttatgatgtgtccactacattgtggctgcagggaaagggggttcctgagagtgaagccaagcatccagcatccagtgaggacctaagtaacacactgaaggcaaaggtggaggaattcaaccgcagactgagggagaatcccgaggatgtccaggcttggatggcctttgttgaatttcaggatgaattgatgaaaggacccagtatgtacaccattgatgagaaagagctagaaagcagaagaaagtctctgaaactgatattggagaaaaagctctcaatcctagacagggccattgagagcaatccgcaccgagtggagctgaagctcgccaggcttaaactgtgcgaagaattgtgggagcctgctgtgctcctgaaggagtggcagaagctggtttttctgcatcctaacgacgctgcgctgtggcagaagtatctcctgttttcccagagccagttcagcaccttttcagtgtccaaagtcctcagtatctatgggaaatgtttgagcaccctggcagcagtgcgggacggcagtatggtgtcccaccctctgctgccgggcacagaggaagccatgtttggtatcttcctgcagcaatgccatttcctccggcaggcaggacaatctgaaaaagccatctccctcttccaggctatgagtgatttcaccttcttcaaacctgacagcgtcacagacatgtcaacaaagcgacaggtggagtttttcgaacctttctgggacagcggagagcctcggtttggggaaaaaggagccaaaggctggaatgcatggatgcgtcagcaagaaaggggaggctgggttgttgtcaataactttggtgaggaggaagaggaagaaaatgcagaagatgacccagaaataaaggataaaacttgtcctagatggcgtctctggctggaggtggagtgtgcacgtgaagccaagcactggctgccctggaaacccgacaaagcgaaaggccagtcagaagaggactgtgaggacccagagagacaggtgttgtttgatgaactgggcccatctttgttcagaatttccagccctgagctgaaatttcagctgatgcgtgcattcctgcaatttttgggggttccatgtggacacagtcttcctgtttcatgcttgtacctagcaatggatgagaattctatctttgactgtgggaactcttctgagaggccgttgaccccttttgattgcccattctctggagttggcattcttggccatatggacacgctggtctcggggagacgacagacagggcattgtaaggaaggagaggcgttcctacagaacatcttccagctggcacagacttgcttctcaggggaggagaagtctcatttctcagtctgttggttacagtatgaaatagcaaaggttgcatggtatttacaagtaaaagacaaaaagcacctcaagtctcaagggaaaaagagtaaaaagctagcaaaacaccttcttaaggaagcagagaaccgaaacaatctttccctttggaaggaatatgcctttctggagtggctgctgggaaatgtagatgaatcccgtaaggttttcgatacagccatcagcatgggaggaagcggcggggtgaaaaactgggggcttttgaacttgtgcctgctttatgctgaactggaagtgggactgttgaacaccctagaaggagccatcagctcacgtgccgtccatgtcctgactaagcttgctgacaatggaccatatgctccttacaatgggcaggtgttatcagtcagcattttgaaagtccgtaaggtatatgagcatgcagtgcaagactgtcttccggaaagtctctcctctggccttggaaagtctcgtatccaccttgtgagcttggtgggttgttttgctctctttcagtacttaactgtaggagttgatgctgcggttcagattttcaagctttttactgataaacggagcagtgttggtgtcctgaaagctggagaacttgatgatgggaagtcgagttcttgggctgcccttgaaacgctgtctgtgatgcaaacaaatttactcaggcatcacctcaagatgggtgtgcaccccttgaatcctttgagagagacacttagggagacattgacgttgtatcctgggaaccagttgctgtggaagtcctatgtggaagtggaaagtaaatcccataacgctagtaaagcgaggaaattttttgatcatgtcagaagatccaccatgtgccttgaaccatggctgtttgcaatccaggccgagcaagccagaaaaaggcttgtggagactgttcagaggaaagatgcgggagagatccatgcaacaatccctgagacaggactgacaaatcggatcaaagcgttatttgaacatgccattggaagccagcagggggctcactgcccactcttgtggaggatatatttacacttcatggtttcgttaggaaataaagaaagaagtaaaggactgttttataaagcacttcagagctgtccctgggccaaggtactgtacttggatgcagtcgagtacttccccagtgagcttcaggagatcctggatcttatgactgagaaagaactacgagtgcgtgtgcctctggaagagctggacctgctactggaagactgaagaaacgagaagggagagaaacaaagaacagaaactatagtaaaccgtgacccagacagggctgctgagctcttagaaatgtgctaaaaggaaagtaacctgaatgaaaaagggcaggtcagcacggcctggaaggctttgcagggcaagataaaggaacagtctttgaacttctacagagtccctgctttctagggccattatgctagctagtcattcccactgtatgtaattggagagagaaatgatatagggtgacgccttccactgcttggtgctatcaatttgaaaaactgaaaactaggactctggatgttttcagtttgtgtgtacctgacgctctggtcttggttactgcgatagtcttccgacttggtggcatcttggacaatttatccagatactgtgagctgcatttttctaaaggttctgcttctaccacattgccaatatattggttttaaacaacacttcaaactatcttgctgatttacaatgaagccaacatgtgcatgcattgtacttgaatataacaaatcacttccactgcacatccctccggatcacatagatattttggagcctgttgtatcagccacttaaggtaaaagagaatctgtcattgttagcagggacatggcttcaattctccatttcagtgtgaatacagagggggaggggagaggggaataacatgtcacttatattcatcatgtttcaggaaattgacattacaagtgggtttcagatcagcttgtttttttggaagagagggagagaatatgtggaaacacacatgaaagaactatgttctgtctgcaataatccctggtctctattataaaatagaattctagtccttttgctgtgctgccgttaacctactttggggataaatacattgtacaatacagcacatattcttttacatgttgaataaacaggttatttaggttccagctgtacacttgtccgacagcagttttaattctgaaacctttgctgaaatgtgatggacaaatgcttgaatggctatgttcgaggatgtaaaaaaaataaaaatatttgtaaatagtatacatgtatttttgtaaaaatattaacttgcagtttatcagtgctggaattttttaattctctattttattgtgatgtaaaatacagaatagaccttatatggataaatatttgtttgatgtttctgtttgaaccagttctttcagttcaatctgctatttaagttgtgtgtatgtccccagatgccatggctctgggtttaagtgcaatatcataagaaaagctatgtttaattagaccaaagtccatagagtgtgtcatggacagtttgagtcccgagactcggcagattctgggttcttgtgacccaccctggctactgggttccagagtagtgctggcattgagatccttttcatcctttgttttcatcagcagaacttctccgaaagaaaattaagcgggaccttccttctctatatagctttgattcaaaggggactgcttcaaacagaccctttcaagctaacccagtaatgagattgcccttggtaatcttggatctacaaactgcttagaagttgagggggataatgtgtatcctttattttgctctgtcattaagcacacctggcttatttttatttatttcaaactttctagtctgcctacaactaggcagatcacaccttaacatccattataaaaaacgaaaaacaaacattagcaagcattgggttaaacaagaaaacggacaaaatcagccccatgtatgttcaaacaaatatgtcttcagtaacttactgaattgaaccctacaactatacagtctcaaataacctggtaatttgctccagatttctggacccactatcgagaatgcaatgttccgtatattaacatatgccacagtttagcatttaccaagaacttcacattttcagaccacaaagatctaacaggttgatattcctgaattatatccttaaaatatctaggaacacaaaccttcccacctcatactgtactcgagtgtgtactggcaaccagtgcaaagagtgtaaggttgcaatacatgctcaaactggaccatgtccaccaacaatcatgcacaggcattttggatctcatgcaatgcctgcatttttgataaacccaaatatagcgcattgcagaaatcaatatgtgatattactaaactttgtaccacagaccgaaaatcacactgtccacataggttgcacctttgctaacaaatgaagctgaaaaaatgctgacttaacaactttcagcatttttgaaacctctctactgggattccctgtatgttctgtttcaatagtatccttcaaggatactccaaatcatgtgctcttgggcaagctgctctatggaggagtggcctagtggttagagtactggtcttgcaatccatgaggtggct
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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