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2024-04-19 22:30:08, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_030184633            2155 bp    mRNA    linear   INV 12-NOV-2020
DEFINITION  PREDICTED: Manduca sexta serine/arginine-rich splicing factor 4
            (LOC115455872), mRNA.
ACCESSION   XM_030184633
VERSION     XM_030184633.2
DBLINK      BioProject: PRJNA674349
KEYWORDS    RefSeq.
SOURCE      Manduca sexta (tobacco hornworm)
  ORGANISM  Manduca sexta
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
            Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata;
            Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini; Manduca.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051124.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Nov 12, 2020 this sequence version replaced XM_030184633.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Manduca sexta Annotation Release 102
            Annotation Version          :: 102
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.5
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2155
                     /organism="Manduca sexta"
                     /mol_type="mRNA"
                     /isolate="Smith_Timp_Sample1"
                     /isolation_source="Purchased from Carolina Biological then
                     incubated and grown in the lab"
                     /db_xref="taxon:7130"
                     /chromosome="10"
                     /tissue_type="body, legs, wings, head"
                     /country="USA: Boston"
                     /collection_date="Sep-2018"
     gene            1..2155
                     /gene="LOC115455872"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 14 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:115455872"
     CDS             2..2074
                     /gene="LOC115455872"
                     /codon_start=1
                     /product="serine/arginine-rich splicing factor 4"
                     /protein_id="XP_030040493.2"
                     /db_xref="GeneID:115455872"
                     /translation="
METLADRRSSDEVDSRRSMQTLANRRSSDEVDSRRTMETIANRRSKDEVDSRRERNEVNSRLVMESLANRRSSVEVDSRRSMQTLANRRSKDEVDSRRERNEVNSRLVMESLANRRSKDEVDSRRTMETLASPRSRDEVDSRRTMETLANRRSRDEVDSRRVRNEVDSPRAMETLADRRSSDEVDSRRSMQTLANRRSSDEVDSRRTMETIANRRSKDEVDSRRERNEVNSRLVMESLANRRSSVEVDSRRSMQTLANRRSKDEVDSRRERNEVNSRLVMESLANRRSKDEVDSRRTMETLASPRSRDEVDSRRTMETLANRRSRDEVDSRRATETLANRRSRDEVDSHRTTETLANRRSRDEMDSRRAMESLASRRSRDDVDSRRSMETLVYRRSRDEVDSRRVRNETDSPRAMETLADRRSRDEVDSRRSMQTLASRRSRDEEVSRRSMETLANRRFRDEVDSRRAMETLASRRSRDEVDSRRAMETLANRRSGDEIDSRRAMETLHGRRARDEIDSRHLRNEVDRSGMDTVLRTRFDNSIILNSNRMVSKCRKMITSFANDRRPRLTDLSVNRNSVTRVDFFIRRNISGVFREHLSNEKNIMEQDTTYARLQNIRASRNNEQALSTNEELKYPQDILPINWQHVLYTLQAIYLCGVLVQIFNENVSKKHKTKSLSWWIPQTTFIKVN"
     misc_feature    149..>1606
                     /gene="LOC115455872"
                     /note="hypothetical protein; Validated; Region: PRK09169"
                     /db_xref="CDD:236394"
ORIGIN      
catggaaacactagctgaccgtcgctccagcgatgaggtggacagccgccgctccatgcaaacattagcaaaccgtcgctccagcgatgaggtggacagccgccgcaccatggaaacaatagcaaaccgtcgctccaaggatgaggtggacagccgccgtgaaagaaatgaagttaacagccgcctcgtcatggaatcattagcaaaccgtcgctccagcgttgaggtggacagccgccgctccatgcaaacattagcaaaccgtcgctccaaggatgaggtggacagccgccgtgaaagaaatgaagttaacagccgcctcgtcatggaatcattagcaaaccgtcgctccaaggatgaggtggacagccgccgcaccatggaaacattagcaagccctcgttccagggatgaggtggacagccgccgcaccatggaaacattagcaaaccgtcgctccagggatgaggtggacagccgccgtgtaaggaatgaagtagatagcccccgcgccatggaaacactagctgaccgtcgctccagcgatgaggtggacagccgccgctccatgcaaacattagcaaaccgtcgctccagcgatgaggtggacagccgccgcaccatggaaacaatagcaaaccgtcgctccaaggatgaggtggacagccgccgtgaaagaaatgaagttaacagccgcctcgtcatggaatcattagcaaaccgtcgctccagcgttgaggtggacagccgccgctccatgcaaacattagcaaaccgtcgctccaaggatgaggtggacagccgccgtgaaagaaatgaagttaacagccgcctcgtcatggaatcattagcaaaccgtcgctccaaggatgaggtggacagccgccgcaccatggaaacattagcaagccctcgttccagggatgaggtggacagccgccgcaccatggaaacattagcaaaccgtcgctccagggatgaggtggacagccgccgcgccacggaaacattagcaaatcgtcgctccagggatgaggtggacagccaccgcaccacggaaacattagcaaaccgtcgctccagagatgagatggacagccgacgcgccatggaatcattagcaagccgtcgctccagggatgacgtggacagccgccgttccatggaaacattagtttaccgtcgctccagggatgaggtggacagccgccgtgtaaggaatgaaacagacagcccccgcgccatggaaacactagctgaccgtcgctccagggatgaggtggacagccgccgctccatgcaaacattagcaagccgtcgctccagggatgaggaggtcagccgccgctccatggaaacattagctaaccgtcgcttcagggatgaggtggacagccgccgcgccatggaaacattagcaagccgtcgttccagggatgaggtggacagccgccgcgccatggaaacattagcaaaccgtcgttctggagatgagatagatagccgccgagccatggaaacattacatggccgtcgcgccagggatgagatagacagtcgccatttaagaaatgaagtggatagaagcggtatggatacagttcttcgcactcgttttgacaacagtatcattcttaattcgaatagaatggtatcgaagtgtagaaaaatgattaccagttttgcgaatgaccgtagacctcgattaactgatctaagtgtaaatcgaaactctgtgacgcgtgttgacttctttatacgcagaaatatatctggagtttttagagaacatctatctaacgaaaaaaatataatggaacaagatacaacgtatgcacgacttcaaaatatcagagcatccagaaataacgaacaggcactttctacgaatgaagaactgaagtatcctcaagacatcttgcctattaactggcaacatgtattatacacacttcaagcgatttatttatgcggcgtacttgtgcagattttcaatgaaaatgtatcgaagaaacataaaacaaaatctctctcctggtggattcctcagacaacttttattaaggtcaactaaggtttcaacatatcgaatatagagctatgccaaaagaccacttgtattgttaaaatggataaattgtaatattatattgta
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]