2024-04-19 22:30:08, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_030184633 2155 bp mRNA linear INV 12-NOV-2020 DEFINITION PREDICTED: Manduca sexta serine/arginine-rich splicing factor 4 (LOC115455872), mRNA. ACCESSION XM_030184633 VERSION XM_030184633.2 DBLINK BioProject: PRJNA674349 KEYWORDS RefSeq. SOURCE Manduca sexta (tobacco hornworm) ORGANISM Manduca sexta Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini; Manduca. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_051124.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Nov 12, 2020 this sequence version replaced XM_030184633.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Manduca sexta Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.5 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2155 /organism="Manduca sexta" /mol_type="mRNA" /isolate="Smith_Timp_Sample1" /isolation_source="Purchased from Carolina Biological then incubated and grown in the lab" /db_xref="taxon:7130" /chromosome="10" /tissue_type="body, legs, wings, head" /country="USA: Boston" /collection_date="Sep-2018" gene 1..2155 /gene="LOC115455872" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 14 samples with support for all annotated introns" /db_xref="GeneID:115455872" CDS 2..2074 /gene="LOC115455872" /codon_start=1 /product="serine/arginine-rich splicing factor 4" /protein_id="XP_030040493.2" /db_xref="GeneID:115455872" /translation="
METLADRRSSDEVDSRRSMQTLANRRSSDEVDSRRTMETIANRRSKDEVDSRRERNEVNSRLVMESLANRRSSVEVDSRRSMQTLANRRSKDEVDSRRERNEVNSRLVMESLANRRSKDEVDSRRTMETLASPRSRDEVDSRRTMETLANRRSRDEVDSRRVRNEVDSPRAMETLADRRSSDEVDSRRSMQTLANRRSSDEVDSRRTMETIANRRSKDEVDSRRERNEVNSRLVMESLANRRSSVEVDSRRSMQTLANRRSKDEVDSRRERNEVNSRLVMESLANRRSKDEVDSRRTMETLASPRSRDEVDSRRTMETLANRRSRDEVDSRRATETLANRRSRDEVDSHRTTETLANRRSRDEMDSRRAMESLASRRSRDDVDSRRSMETLVYRRSRDEVDSRRVRNETDSPRAMETLADRRSRDEVDSRRSMQTLASRRSRDEEVSRRSMETLANRRFRDEVDSRRAMETLASRRSRDEVDSRRAMETLANRRSGDEIDSRRAMETLHGRRARDEIDSRHLRNEVDRSGMDTVLRTRFDNSIILNSNRMVSKCRKMITSFANDRRPRLTDLSVNRNSVTRVDFFIRRNISGVFREHLSNEKNIMEQDTTYARLQNIRASRNNEQALSTNEELKYPQDILPINWQHVLYTLQAIYLCGVLVQIFNENVSKKHKTKSLSWWIPQTTFIKVN"
misc_feature 149..>1606 /gene="LOC115455872" /note="hypothetical protein; Validated; Region: PRK09169" /db_xref="CDD:236394" ORIGIN
catggaaacactagctgaccgtcgctccagcgatgaggtggacagccgccgctccatgcaaacattagcaaaccgtcgctccagcgatgaggtggacagccgccgcaccatggaaacaatagcaaaccgtcgctccaaggatgaggtggacagccgccgtgaaagaaatgaagttaacagccgcctcgtcatggaatcattagcaaaccgtcgctccagcgttgaggtggacagccgccgctccatgcaaacattagcaaaccgtcgctccaaggatgaggtggacagccgccgtgaaagaaatgaagttaacagccgcctcgtcatggaatcattagcaaaccgtcgctccaaggatgaggtggacagccgccgcaccatggaaacattagcaagccctcgttccagggatgaggtggacagccgccgcaccatggaaacattagcaaaccgtcgctccagggatgaggtggacagccgccgtgtaaggaatgaagtagatagcccccgcgccatggaaacactagctgaccgtcgctccagcgatgaggtggacagccgccgctccatgcaaacattagcaaaccgtcgctccagcgatgaggtggacagccgccgcaccatggaaacaatagcaaaccgtcgctccaaggatgaggtggacagccgccgtgaaagaaatgaagttaacagccgcctcgtcatggaatcattagcaaaccgtcgctccagcgttgaggtggacagccgccgctccatgcaaacattagcaaaccgtcgctccaaggatgaggtggacagccgccgtgaaagaaatgaagttaacagccgcctcgtcatggaatcattagcaaaccgtcgctccaaggatgaggtggacagccgccgcaccatggaaacattagcaagccctcgttccagggatgaggtggacagccgccgcaccatggaaacattagcaaaccgtcgctccagggatgaggtggacagccgccgcgccacggaaacattagcaaatcgtcgctccagggatgaggtggacagccaccgcaccacggaaacattagcaaaccgtcgctccagagatgagatggacagccgacgcgccatggaatcattagcaagccgtcgctccagggatgacgtggacagccgccgttccatggaaacattagtttaccgtcgctccagggatgaggtggacagccgccgtgtaaggaatgaaacagacagcccccgcgccatggaaacactagctgaccgtcgctccagggatgaggtggacagccgccgctccatgcaaacattagcaagccgtcgctccagggatgaggaggtcagccgccgctccatggaaacattagctaaccgtcgcttcagggatgaggtggacagccgccgcgccatggaaacattagcaagccgtcgttccagggatgaggtggacagccgccgcgccatggaaacattagcaaaccgtcgttctggagatgagatagatagccgccgagccatggaaacattacatggccgtcgcgccagggatgagatagacagtcgccatttaagaaatgaagtggatagaagcggtatggatacagttcttcgcactcgttttgacaacagtatcattcttaattcgaatagaatggtatcgaagtgtagaaaaatgattaccagttttgcgaatgaccgtagacctcgattaactgatctaagtgtaaatcgaaactctgtgacgcgtgttgacttctttatacgcagaaatatatctggagtttttagagaacatctatctaacgaaaaaaatataatggaacaagatacaacgtatgcacgacttcaaaatatcagagcatccagaaataacgaacaggcactttctacgaatgaagaactgaagtatcctcaagacatcttgcctattaactggcaacatgtattatacacacttcaagcgatttatttatgcggcgtacttgtgcagattttcaatgaaaatgtatcgaagaaacataaaacaaaatctctctcctggtggattcctcagacaacttttattaaggtcaactaaggtttcaacatatcgaatatagagctatgccaaaagaccacttgtattgttaaaatggataaattgtaatattatattgta
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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