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2021-12-06 05:05:33, GGRNA.v2 : RefSeq release 208 (Sep, 2021)

LOCUS       XM_030038758            4306 bp    mRNA    linear   VRT 03-MAY-2021
DEFINITION  PREDICTED: Aquila chrysaetos chrysaetos NRDE-2, necessary for RNA
            interference, domain containing (NRDE2), transcript variant X4,
            mRNA.
ACCESSION   XM_030038758
VERSION     XM_030038758.1
DBLINK      BioProject: PRJNA556399
KEYWORDS    RefSeq.
SOURCE      Aquila chrysaetos chrysaetos
  ORGANISM  Aquila chrysaetos chrysaetos
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Accipitriformes; Accipitridae;
            Accipitrinae; Aquila.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_044005.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Aquila chrysaetos chrysaetos
                                           Annotation Release 101
            Annotation Version          :: 101
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.6
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4306
                     /organism="Aquila chrysaetos chrysaetos"
                     /mol_type="mRNA"
                     /sub_species="chrysaetos"
                     /db_xref="taxon:223781"
                     /chromosome="2"
     gene            1..4306
                     /gene="NRDE2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 ESTs, 6 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 15 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:115351703"
     CDS             103..3615
                     /gene="NRDE2"
                     /codon_start=1
                     /product="nuclear exosome regulator NRDE2 isoform X4"
                     /protein_id="XP_029894618.1"
                     /db_xref="GeneID:115351703"
                     /translation="
MALFPAFASAAEPGEPPTGSSEGSRKELDWLSNPSFSTEDALLLHQRATEVANLIPEKSPLIRTTSKSELSGEGDTDESLKQSSKKRKKKKKKHHNYKKTKKKTKGDSSSSELDWDTKHIKDKAEGSGRNHEKEGAANLDKKTSNLTSNRCVWLDDIQAFTAESFRIDKKPDPANWAYKSLYRGDIARYKRRGESCLGIDAKKQCITWDSSASKRKQLQRRPERYFTKNNVKMLNTDGIPVCNKSSPSDPTAFIPVFQMETDDPSDTTDVNPLGIYDPSTTVWLQGKGCKSTDHEPVNMQQTIQEPGININSILMSKVEEHNKKVRENPRDINAWMEFVSFQDELMRGPSPYASKGEQEVRRKSLKLILEKKLAILERAIESNPSNVDLKLARLKLCTEFWEPPALIKEWQKLIFLHPNNPELWKKYLLFCQSQFTTFSVSKINSLYGKCLTTLAAVQDGSMVSHPLLPGTEEAMLAIFIQQCHFLRQAGHSEKAVSLFQALIDFTFFKPDSVKDLPTRGQVEFFEPFWDSGEPRIGEKGARGWKAWMHQQEKGGWIALKPDDDDDEEIDEDQEIKDKSLPKWHIWLDIEYSREARHWLPWRPDKTKKETEEDCEDPERQVLFDDLGPSLIQLSNPDLQRQLLYSFLQFLGVPCTSKLFPSNLYIAMDENNIFESVLSDEKPLTSVSFPLSGFNCIGHMDTMLRGRHHIGHYKEGEEFIQNVFHVLFLLFSGKEKSNLSICWLQYEISKVVQCLQAKNKKKLKAQGRKSKKLAKNLLKEPDNRNHLSLWKLYAYLEWLLGNIDDARKVFDTALCMAGTGGCKSPQLCSLSLLYAQLEAELLESTEGAVISRAVHILTKLAESGPYVPYSGQVLSVNVLKARKTYEHVLQDYLSKTPVSDQDQVSDANQLVNLVGCYALFQYLTVGIDAAVLIYAQTSEKLEAPGPQKCENTGENFGIQNFPTALEAITLLHTNLLRFHMKISVYPLNPLREALTEALKRYPSNQSLWRSYIHIQRKSHSASKARRFFDGVTRSANSLEPWLFAIQAEQLRKKLTENVQRADVGEIHSTIPETGLTNRIVALFEHAVQSENGTHCPLLWRMYLNFLASLGKKERSKGLFYKALQNCPWAKVLYMDAVEYFPDDLQETLDLMTEKELRVRVPMEELDLLLEV"
     misc_feature    1060..2055
                     /gene="NRDE2"
                     /note="necessary for RNA interference; Region: NRDE-2;
                     pfam08424"
                     /db_xref="CDD:369867"
ORIGIN      
cgggcgaactacacctcccagcatgctcggcgccgcggcgccatcttgccccgccgctccgcggggcagttcgggcagatagtagtggcggtaagctgagacatggccctgttcccggcttttgccagtgccgccgagcccggggagcccccaaccggcagcagcgagggctccaggaaagaattggactggcttagtaacccaagcttctctacggaagatgcactattactgcatcagcgtgctacagaagttgcaaatctcatccctgaaaaatcaccactaataaggactacctcaaaatcagagttgtcaggggaaggtgatacagatgagagtctgaaacagtcaagtaagaaaaggaaaaagaaaaagaagaagcatcacaactataagaagacaaaaaagaaaacaaaaggcgactccagtagcagtgaattggactgggacactaagcacatcaaggacaaagctgaaggaagtggcagaaatcatgaaaaggaaggagcagcaaatctagataagaaaacatcaaatcttaccagcaatcgctgtgtttggcttgatgatatccaggctttcacggcagaatccttcagaatagacaagaaaccagaccctgcaaactgggcctacaaatccctgtatcgaggggacatagcaagatataagaggagaggagagtcctgtcttggcatagatgcaaagaaacagtgtataacttgggacagttctgcatcaaaaaggaagcaattacagaggcgacctgagcgctatttcacaaagaacaatgtgaagatgctgaacacagatgggattcctgtttgcaataaaagttctccatctgacccaactgcttttataccagttttccaaatggaaactgatgatccttctgacacaacagacgtgaatcctcttgggatttatgatccatcaactacagtgtggctacaaggaaaagggtgcaagagtacagaccatgagcctgtcaatatgcagcaaacaattcaagagcctgggataaacattaactccattctaatgtcaaaagtggaagaacataacaagaaagtcagagaaaacccaagagatattaatgcttggatggaatttgtttcttttcaggatgaattaatgagaggacctagcccttatgccagtaaaggagagcaggaagtaagaagaaaatcactgaagttaatcttagaaaagaaactggctattttagagagggcaattgaaagcaatccaagtaatgttgatctgaaacttgccaggctgaagctttgcacagaattctgggaaccaccagctttaatcaaagaatggcagaagctaattttcttacatcccaataatccagagctgtggaagaaatatctcctgttctgtcaaagtcagttcactaccttttctgtttcaaaaatcaatagtctctatggaaaatgtttgactacattggcagctgtacaggatggcagcatggtttcacatcctctactgcctggcacagaagaagctatgctagctatatttattcagcagtgccactttctgagacaggctggccattctgagaaagcagtgtctttgtttcaggctctgattgacttcaccttctttaaacctgacagtgtaaaagatctgccaacaaggggacaggtggaattctttgaacccttttgggatagcggagaaccacgaattggagaaaaaggagcaagaggctggaaggcatggatgcatcaacaagaaaagggtggctggattgctcttaagcctgatgatgatgatgatgaagagatagatgaggatcaagaaataaaggataaaagtctccccaagtggcatatttggttggatattgaatattctcgtgaagcaaggcattggttaccttggaggccagacaaaaccaaaaaggaaactgaagaagattgtgaggatccagaaagacaggtattatttgatgatcttggaccatctttaatccagctttctaatccagatcttcaacgtcaactactgtactcatttttgcaattcctgggagttccatgtacaagtaaactctttccttccaacctctatattgccatggatgaaaataacatctttgagagtgtgctttctgatgaaaagccactgacttctgttagttttccactttctggattcaactgtattggtcatatggacacgatgctacgagggagacatcacataggccactataaagaaggagaggagttcatacagaatgtttttcatgttctattcctgctattttcaggaaaggaaaaatctaacctgtccatttgttggttacagtatgaaatatctaaggtagttcagtgtctccaagcaaaaaataagaagaagctgaaagcacaagggaggaagagtaaaaagttggccaagaatctccttaaagaacctgacaaccgaaaccacctatctctctggaaactgtatgcctacctagaatggctgcttggcaacattgatgatgccaggaaggtattcgacacagctctttgcatggcagggacaggagggtgcaagagtccccagctctgcagcctcagtctgctttatgctcagctggaagcggaactactggaaagtacagaaggagccgttatatcacgtgctgttcatatattgaccaaactggctgaaagtggaccatatgtgccctatagtggacaagtgttatctgtgaatgtcttgaaagctcgtaaaacatatgagcatgtactgcaagattatttaagtaaaacaccagtttctgatcaggatcaggtcagtgatgctaatcagctggttaacttggttggttgttatgcactgttccagtatttgactgttgggattgatgctgcagtattaatatatgcacagacttcagaaaaacttgaagctcctggtccacagaaatgtgaaaatactggagagaattttggcattcaaaattttcccactgctcttgaagctatcacactgctgcatacgaatttactcagattccacatgaaaattagtgtttatcctttgaatcctctgcgagaggcactaacggaggctctgaaacggtatcctagcaaccagtctctttggaggtcatacatccacatccaaaggaagtctcacagtgctagcaaagcacgaaggttttttgatggtgtcacaaggtctgctaactcactagagccatggctgtttgcaatccaagcagagcagctgagaaaaaaactcactgagaatgtccagagggcagatgttggtgaaatacattctactattcctgaaactgggttaacaaatcggattgtagctctattcgaacatgcagttcagagtgaaaatggtacccattgtccactgctgtggagaatgtatttgaactttctggcttcactaggaaaaaaagaaagaagtaaaggattgttttataaagcccttcaaaactgtccttgggcaaaggtactctatatggatgcagtagagtacttccctgatgatctgcaagagacacttgatctaatgactgaaaaagaactgagagtgcgggtacctatggaagagctggatctgctattagaggtttaaaagaagactgtagatgagtggagaaagtacagaagctagttccaaacctaacagttagacctgtctctcttcaaacaggaagtctgttgggacttgggtactatgtgctttttttttttcctaagggttattttttgggtgtttttttgtgttccattttgtttgtttggtttttttaagcttttatataaattgctatcaaaatggagttctattagctgcaagtattctggaatcaagtactgcatttcacccacaaaaatgcatccatttctctgaagtattgctggctcccacagaaggataccctcgtataaatagcctcctgttgaatgctgcccacatttcttattctattgtttgaaattacattccctagagttcagtggagattcagtacatgccaactatggtttggtgagcagcacaggaaataaacatctgccaaatggatgctccactgtcctccagttggcagacttcagtaatttccttcagcttggtatgcatgcatgtgtatatataactaccaagtcaaacagccgttacatctgtatatatactgttagtaaaagctaaatctttgcttgagtgggcacctattttggacttatatttgtatgttttgacagatgaccattttaatacgaatatttatgaaaaatacacctgaatattttaaaattcaaaa
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]