2024-04-26 02:27:02, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_030038755 4309 bp mRNA linear VRT 03-MAY-2021 DEFINITION PREDICTED: Aquila chrysaetos chrysaetos NRDE-2, necessary for RNA interference, domain containing (NRDE2), transcript variant X3, mRNA. ACCESSION XM_030038755 VERSION XM_030038755.1 DBLINK BioProject: PRJNA556399 KEYWORDS RefSeq. SOURCE Aquila chrysaetos chrysaetos ORGANISM Aquila chrysaetos chrysaetos Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Accipitriformes; Accipitridae; Accipitrinae; Aquila. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_044005.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Aquila chrysaetos chrysaetos Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.6 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4309 /organism="Aquila chrysaetos chrysaetos" /mol_type="mRNA" /sub_species="chrysaetos" /db_xref="taxon:223781" /chromosome="2" gene 1..4309 /gene="NRDE2" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 ESTs, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns" /db_xref="GeneID:115351703" CDS 103..3618 /gene="NRDE2" /codon_start=1 /product="nuclear exosome regulator NRDE2 isoform X3" /protein_id="XP_029894615.1" /db_xref="GeneID:115351703" /translation="
MALFPAFASAAEPGEPPTGSSEGSRKELDWLSNPSFSTEDALLLHQRATEVANLIPEKSPLISRTTSKSELSGEGDTDESLKQSSKKRKKKKKKHHNYKKTKKKTKGDSSSSELDWDTKHIKDKAEGSGRNHEKEGAANLDKKTSNLTSNRCVWLDDIQAFTAESFRIDKKPDPANWAYKSLYRGDIARYKRRGESCLGIDAKKQCITWDSSASKRKQLQRRPERYFTKNNVKMLNTDGIPVCNKSSPSDPTAFIPVFQMETDDPSDTTDVNPLGIYDPSTTVWLQGKGCKSTDHEPVNMQQTIQEPGININSILMSKVEEHNKKVRENPRDINAWMEFVSFQDELMRGPSPYASKGEQEVRRKSLKLILEKKLAILERAIESNPSNVDLKLARLKLCTEFWEPPALIKEWQKLIFLHPNNPELWKKYLLFCQSQFTTFSVSKINSLYGKCLTTLAAVQDGSMVSHPLLPGTEEAMLAIFIQQCHFLRQAGHSEKAVSLFQALIDFTFFKPDSVKDLPTRGQVEFFEPFWDSGEPRIGEKGARGWKAWMHQQEKGGWIALKPDDDDDEEIDEDQEIKDKSLPKWHIWLDIEYSREARHWLPWRPDKTKKETEEDCEDPERQVLFDDLGPSLIQLSNPDLQRQLLYSFLQFLGVPCTSKLFPSNLYIAMDENNIFESVLSDEKPLTSVSFPLSGFNCIGHMDTMLRGRHHIGHYKEGEEFIQNVFHVLFLLFSGKEKSNLSICWLQYEISKVVQCLQAKNKKKLKAQGRKSKKLAKNLLKEPDNRNHLSLWKLYAYLEWLLGNIDDARKVFDTALCMAGTGGCKSPQLCSLSLLYAQLEAELLESTEGAVISRAVHILTKLAESGPYVPYSGQVLSVNVLKARKTYEHVLQDYLSKTPVSDQDQVSDANQLVNLVGCYALFQYLTVGIDAAVLIYAQTSEKLEAPGPQKCENTGENFGIQNFPTALEAITLLHTNLLRFHMKISVYPLNPLREALTEALKRYPSNQSLWRSYIHIQRKSHSASKARRFFDGVTRSANSLEPWLFAIQAEQLRKKLTENVQRADVGEIHSTIPETGLTNRIVALFEHAVQSENGTHCPLLWRMYLNFLASLGKKERSKGLFYKALQNCPWAKVLYMDAVEYFPDDLQETLDLMTEKELRVRVPMEELDLLLEV"
misc_feature 595..873 /gene="NRDE2" /note="MTR4-interacting domain (MID) found in nuclear exosome regulator NRDE2 and similar proteins; Region: NRDE2_MID; cd22200" /db_xref="CDD:412062" misc_feature order(595..621,628..633,643..648,652..654,658..702, 709..717,721..729,751..759,769..774,778..783,790..810, 829..840,850..873) /gene="NRDE2" /note="MTR4 binding site [polypeptide binding]; other site" /db_xref="CDD:412062" misc_feature 1063..2058 /gene="NRDE2" /note="necessary for RNA interference; Region: NRDE-2; pfam08424" /db_xref="CDD:429988" ORIGIN
cgggcgaactacacctcccagcatgctcggcgccgcggcgccatcttgccccgccgctccgcggggcagttcgggcagatagtagtggcggtaagctgagacatggccctgttcccggcttttgccagtgccgccgagcccggggagcccccaaccggcagcagcgagggctccaggaaagaattggactggcttagtaacccaagcttctctacggaagatgcactattactgcatcagcgtgctacagaagttgcaaatctcatccctgaaaaatcaccactaataagcaggactacctcaaaatcagagttgtcaggggaaggtgatacagatgagagtctgaaacagtcaagtaagaaaaggaaaaagaaaaagaagaagcatcacaactataagaagacaaaaaagaaaacaaaaggcgactccagtagcagtgaattggactgggacactaagcacatcaaggacaaagctgaaggaagtggcagaaatcatgaaaaggaaggagcagcaaatctagataagaaaacatcaaatcttaccagcaatcgctgtgtttggcttgatgatatccaggctttcacggcagaatccttcagaatagacaagaaaccagaccctgcaaactgggcctacaaatccctgtatcgaggggacatagcaagatataagaggagaggagagtcctgtcttggcatagatgcaaagaaacagtgtataacttgggacagttctgcatcaaaaaggaagcaattacagaggcgacctgagcgctatttcacaaagaacaatgtgaagatgctgaacacagatgggattcctgtttgcaataaaagttctccatctgacccaactgcttttataccagttttccaaatggaaactgatgatccttctgacacaacagacgtgaatcctcttgggatttatgatccatcaactacagtgtggctacaaggaaaagggtgcaagagtacagaccatgagcctgtcaatatgcagcaaacaattcaagagcctgggataaacattaactccattctaatgtcaaaagtggaagaacataacaagaaagtcagagaaaacccaagagatattaatgcttggatggaatttgtttcttttcaggatgaattaatgagaggacctagcccttatgccagtaaaggagagcaggaagtaagaagaaaatcactgaagttaatcttagaaaagaaactggctattttagagagggcaattgaaagcaatccaagtaatgttgatctgaaacttgccaggctgaagctttgcacagaattctgggaaccaccagctttaatcaaagaatggcagaagctaattttcttacatcccaataatccagagctgtggaagaaatatctcctgttctgtcaaagtcagttcactaccttttctgtttcaaaaatcaatagtctctatggaaaatgtttgactacattggcagctgtacaggatggcagcatggtttcacatcctctactgcctggcacagaagaagctatgctagctatatttattcagcagtgccactttctgagacaggctggccattctgagaaagcagtgtctttgtttcaggctctgattgacttcaccttctttaaacctgacagtgtaaaagatctgccaacaaggggacaggtggaattctttgaacccttttgggatagcggagaaccacgaattggagaaaaaggagcaagaggctggaaggcatggatgcatcaacaagaaaagggtggctggattgctcttaagcctgatgatgatgatgatgaagagatagatgaggatcaagaaataaaggataaaagtctccccaagtggcatatttggttggatattgaatattctcgtgaagcaaggcattggttaccttggaggccagacaaaaccaaaaaggaaactgaagaagattgtgaggatccagaaagacaggtattatttgatgatcttggaccatctttaatccagctttctaatccagatcttcaacgtcaactactgtactcatttttgcaattcctgggagttccatgtacaagtaaactctttccttccaacctctatattgccatggatgaaaataacatctttgagagtgtgctttctgatgaaaagccactgacttctgttagttttccactttctggattcaactgtattggtcatatggacacgatgctacgagggagacatcacataggccactataaagaaggagaggagttcatacagaatgtttttcatgttctattcctgctattttcaggaaaggaaaaatctaacctgtccatttgttggttacagtatgaaatatctaaggtagttcagtgtctccaagcaaaaaataagaagaagctgaaagcacaagggaggaagagtaaaaagttggccaagaatctccttaaagaacctgacaaccgaaaccacctatctctctggaaactgtatgcctacctagaatggctgcttggcaacattgatgatgccaggaaggtattcgacacagctctttgcatggcagggacaggagggtgcaagagtccccagctctgcagcctcagtctgctttatgctcagctggaagcggaactactggaaagtacagaaggagccgttatatcacgtgctgttcatatattgaccaaactggctgaaagtggaccatatgtgccctatagtggacaagtgttatctgtgaatgtcttgaaagctcgtaaaacatatgagcatgtactgcaagattatttaagtaaaacaccagtttctgatcaggatcaggtcagtgatgctaatcagctggttaacttggttggttgttatgcactgttccagtatttgactgttgggattgatgctgcagtattaatatatgcacagacttcagaaaaacttgaagctcctggtccacagaaatgtgaaaatactggagagaattttggcattcaaaattttcccactgctcttgaagctatcacactgctgcatacgaatttactcagattccacatgaaaattagtgtttatcctttgaatcctctgcgagaggcactaacggaggctctgaaacggtatcctagcaaccagtctctttggaggtcatacatccacatccaaaggaagtctcacagtgctagcaaagcacgaaggttttttgatggtgtcacaaggtctgctaactcactagagccatggctgtttgcaatccaagcagagcagctgagaaaaaaactcactgagaatgtccagagggcagatgttggtgaaatacattctactattcctgaaactgggttaacaaatcggattgtagctctattcgaacatgcagttcagagtgaaaatggtacccattgtccactgctgtggagaatgtatttgaactttctggcttcactaggaaaaaaagaaagaagtaaaggattgttttataaagcccttcaaaactgtccttgggcaaaggtactctatatggatgcagtagagtacttccctgatgatctgcaagagacacttgatctaatgactgaaaaagaactgagagtgcgggtacctatggaagagctggatctgctattagaggtttaaaagaagactgtagatgagtggagaaagtacagaagctagttccaaacctaacagttagacctgtctctcttcaaacaggaagtctgttgggacttgggtactatgtgctttttttttttcctaagggttattttttgggtgtttttttgtgttccattttgtttgtttggtttttttaagcttttatataaattgctatcaaaatggagttctattagctgcaagtattctggaatcaagtactgcatttcacccacaaaaatgcatccatttctctgaagtattgctggctcccacagaaggataccctcgtataaatagcctcctgttgaatgctgcccacatttcttattctattgtttgaaattacattccctagagttcagtggagattcagtacatgccaactatggtttggtgagcagcacaggaaataaacatctgccaaatggatgctccactgtcctccagttggcagacttcagtaatttccttcagcttggtatgcatgcatgtgtatatataactaccaagtcaaacagccgttacatctgtatatatactgttagtaaaagctaaatctttgcttgagtgggcacctattttggacttatatttgtatgttttgacagatgaccattttaatacgaatatttatgaaaaatacacctgaatattttaaaattcaaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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