2024-03-29 18:28:48, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_029964227 3329 bp mRNA linear VRT 29-JUL-2019 DEFINITION PREDICTED: Manacus vitellinus NRDE-2, necessary for RNA interference, domain containing (NRDE2), transcript variant X3, mRNA. ACCESSION XM_029964227 VERSION XM_029964227.1 DBLINK BioProject: PRJNA341382 KEYWORDS RefSeq. SOURCE Manacus vitellinus (golden-collared manakin) ORGANISM Manacus vitellinus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Pipridae; Manacus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_021940750.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Manacus vitellinus Annotation Release 103 Annotation Version :: 103 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3329 /organism="Manacus vitellinus" /mol_type="mRNA" /isolate="BGI_N305" /db_xref="taxon:328815" /chromosome="Unknown" /sex="female" /country="Panama" gene 1..3329 /gene="NRDE2" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 ESTs, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns" /db_xref="GeneID:103757529" CDS 40..3222 /gene="NRDE2" /codon_start=1 /product="protein NRDE2 homolog isoform X3" /protein_id="XP_029820087.1" /db_xref="GeneID:103757529" /translation="
MALFPAFAGAVQPESPPAGSTEGSRKELDWLSNPSFSAEDALLLHQRTTEAANLIPEKSPLKSRTSSRSELSGESDTDESLKEGSKKRKKKKKKHHHYKKTKRKTKGDSSSSESDVDSKHIKNKGSGRNGEKEAAANLGKKTSSLTSSRSVWLDDVQAFTTDTFRIDKKPDPGNWTYKSLYRGDIARYKRRGESCLGIDVKKQCITWDSSTSKRKQVQIQPERYFTKSNVKMLNTDGIPVCNKDCPSDPPAFIPVSQAEIDDSSDRKEVNPLGIYDPSTAVWLQGKGLKSADNESVNTQQTIQEPGINMNPILMTKVEEHNKKVRENPRDINAWMEFVSFQDELMRGPSPYASKGEQEVRRKSLKLILEKKLAILERAIESNPSNVDLKLARLKLCTEFWEPPALIKEWQKLIFLHPNNPEMWKKYLLFCQSQFTTFSVSKINSLYGKCLTTLAAVQDGSMVSHPLLPGTEEAMLAIFIQQCHFLRQAGHSEKAVSLFQALIDFTFFKPDSVKDLPTRGQVEFFEPFWDSGEPRIGEKGARGWKAWMHQQEKGGWVALKDDDEDDEEIDEDLEIKDKTLPKWHIWLDIEYSREARHWLPWRPDKTKKETEEDCEDPERQVLFDDLGPSLIRLSNPNLQHQLLYSFLQFLGVPCTSKLFPSSLYIAMDENNIFDSVLYDDKPLTSVDFPLSGFNSIGHMDTMLRGRRQIGHCKEGEEFIQNVFHVLFQIFTGKEKSNLSICWLQYEIYKVIQCLEAKKKKKLKAQGRRSKKLAKNFLKAPDNRNNLTLWKLYAYLEWLLGNTDDARKVFDTALCTAGTGGLKSAHLCSLSLLYAQLEVELLESIERAVMSRAVHILTKLTESGPYVPYSGQVLSVNVLKARKTYEHALQDYLSKIPVSDQDQVSDTDQLVNLVGCYALFQYLTVGIDAAVLIYTQASEKLEASGPQKYEKTGENFGIQNFPSALEAVMLLHTNLLRFHMKISVYPLNPLREALTEALKRYPSNQSLWRSYIHIQRKSHSASKARRFFDNVTRSTKSLEPWLFAIQAEQMRKKLTEKVQRCW"
misc_feature 526..804 /gene="NRDE2" /note="MTR4-interacting domain (MID) found in nuclear exosome regulator NRDE2 and similar proteins; Region: NRDE2_MID; cd22200" /db_xref="CDD:412062" misc_feature order(526..552,559..564,574..579,583..585,589..633, 640..648,652..660,682..690,700..705,709..714,721..741, 760..771,781..804) /gene="NRDE2" /note="MTR4 binding site [polypeptide binding]; other site" /db_xref="CDD:412062" misc_feature 994..1989 /gene="NRDE2" /note="necessary for RNA interference; Region: NRDE-2; pfam08424" /db_xref="CDD:429988" ORIGIN
gagcagtcggggtgggcggtggcggcggccggcccagacatggcgctgttcccggccttcgccggggctgtccagcccgagagcccccccgccggcagcaccgagggctccaggaaagaattagactggctgagtaacccgagcttctctgcagaagatgcactattactgcaccagcgcactacagaagctgccaatctcattcctgaaaaatcaccactaaaaagcaggacttcttcaagatctgagttgtcaggagaaagtgatacagatgagagtctgaaagagggaagtaagaaaaggaaaaaaaaaaagaaaaagcatcaccactataagaagacaaaaaggaaaaccaaaggggactccagtagcagtgaatcggatgtggacagtaagcacatcaagaacaaaggaagtggtagaaatggtgaaaaggaagcagcagcaaatctaggtaagaaaacatcaagtctcaccagcagtcgctctgtttggctcgatgatgtccaggctttcacaacagacaccttcagaatagacaagaaaccagaccctggaaactggacctacaaatccttgtatcgtggggacatagcaaggtataaaaggagaggggagtcctgccttggcatagatgtgaagaaacagtgtataacttgggacagttctacatcaaaaaggaaacaagtacagattcaacctgagcgctactttacaaagagcaatgtgaagatgctgaacacagatgggattcctgtttgcaataaagattgtccttctgacccacctgcttttataccagtttcccaagcagaaattgatgattcttctgacagaaaagaggtaaatcctcttgggatttatgatccatcaactgcagtgtggctacaaggaaaagggctcaagagtgcagacaatgagtctgtaaatacgcagcaaacaattcaagagcctgggataaacatgaaccccatcctaatgacaaaagtggaagaacataacaagaaagtcagagaaaacccaagagatattaatgcttggatggaatttgtttcttttcaggatgaattaatgagaggacctagcccttatgccagtaagggagaacaggaagtaagaagaaaatcactcaagttaatcttagaaaagaaactggctatattagagagggcaattgaaagtaatcccagtaatgttgatctgaaacttgccaggctgaagctttgcacagagttctgggaaccaccagctttgatcaaagaatggcagaagctaattttcttgcatcctaataatccagagatgtggaagaaataccttctgttctgtcaaagtcagttcactaccttttctgtttcaaaaatcaatagtctctatggaaaatgtttaacaacattggcagctgtacaggatggcagcatggtatcccatcctctgctgcctggcacagaagaagccatgctggctatatttattcagcagtgccactttctgagacaggctggccattctgagaaagcagtgtctttatttcaggctctgattgacttcaccttctttaaacctgacagtgtaaaagatctgccaacaaggggacaggtggaattctttgaacccttttgggatagtggagaaccacgaattggagaaaaaggagcaagaggttggaaagcatggatgcaccaacaagaaaagggtggatgggttgctcttaaggatgatgatgaggatgatgaagagatagatgaggatctagaaataaaggataaaactctccccaagtggcatatttggttggatattgaatattcccgtgaagcaaggcattggttaccttggaggccagacaaaaccaaaaaggaaactgaagaagattgtgaagatccagaaagacaggtgttatttgatgatcttggaccatctttaatccgtctttcaaatccaaatcttcaacatcaactgttgtactcatttttgcaattcctaggagttccatgtacaagtaaactctttccttccagtctctatattgccatggatgaaaataacatctttgacagtgtgctttatgatgataaaccgctgacatctgttgattttccactctctggattcaacagtattggtcatatggacacaatgctacgagggagacgtcagataggccactgtaaagaaggagaggagttcatacagaatgttttccatgttctattccagatatttacaggaaaggaaaaatctaatctgtctatttgttggttacagtatgaaatatataaggtgattcaatgtctcgaagcaaaaaagaaaaagaagctaaaagcacaagggaggagaagtaaaaagctggccaagaatttccttaaagcacctgacaaccgaaacaaccttacgctctggaaactctatgcctacctagaatggctgcttggtaacacagatgatgccaggaaggtgtttgacacagctctttgcacagcagggacaggaggattgaagagtgcccacctctgcagcctcagcctgctttatgctcagctggaagtggaactgctagaaagtatagaaagggctgttatgtcacgtgctgttcatatattgaccaaattgactgaaagtggaccatatgtgccctatagtggacaagtgttatctgtgaatgtcttgaaagctcgtaaaacatatgagcatgcactgcaagattatttaagtaaaataccagtttctgatcaggatcaggtcagtgatactgatcagctagttaacttggttggttgttatgcactgttccagtatttgactgttgggattgatgctgcagtactaatatatacacaggcttcagaaaaacttgaagcttctggtccacagaaatatgaaaaaactggagagaattttggcattcaaaattttcccagtgctcttgaagctgtcatgctactgcatacaaatttactgagatttcacatgaaaattagtgtttatcctttgaatcctctgcgagaggcactaacggaggctctgaaacggtatcctagcaaccagtctctttggaggtcatacatccacatccaaagaaagtctcacagtgctagcaaagcacgaagattttttgataatgtcacaaggtctactaagtctttagagccatggctgtttgcaatccaagcagagcagatgagaaaaaaactcacagagaaagtccagagatgttggtgaagtacattgtactattcctgaaactggattaacaaatcgcattgtagctctatttgaacacgcagttcagagtgaaaatggtacccattgtccattgctgtggagaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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