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2024-03-29 18:28:48, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_029964227            3329 bp    mRNA    linear   VRT 29-JUL-2019
DEFINITION  PREDICTED: Manacus vitellinus NRDE-2, necessary for RNA
            interference, domain containing (NRDE2), transcript variant X3,
            mRNA.
ACCESSION   XM_029964227
VERSION     XM_029964227.1
DBLINK      BioProject: PRJNA341382
KEYWORDS    RefSeq.
SOURCE      Manacus vitellinus (golden-collared manakin)
  ORGANISM  Manacus vitellinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Passeriformes; Pipridae; Manacus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_021940750.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Manacus vitellinus Annotation
                                           Release 103
            Annotation Version          :: 103
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.2
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3329
                     /organism="Manacus vitellinus"
                     /mol_type="mRNA"
                     /isolate="BGI_N305"
                     /db_xref="taxon:328815"
                     /chromosome="Unknown"
                     /sex="female"
                     /country="Panama"
     gene            1..3329
                     /gene="NRDE2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 ESTs, 1 Protein, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:103757529"
     CDS             40..3222
                     /gene="NRDE2"
                     /codon_start=1
                     /product="protein NRDE2 homolog isoform X3"
                     /protein_id="XP_029820087.1"
                     /db_xref="GeneID:103757529"
                     /translation="
MALFPAFAGAVQPESPPAGSTEGSRKELDWLSNPSFSAEDALLLHQRTTEAANLIPEKSPLKSRTSSRSELSGESDTDESLKEGSKKRKKKKKKHHHYKKTKRKTKGDSSSSESDVDSKHIKNKGSGRNGEKEAAANLGKKTSSLTSSRSVWLDDVQAFTTDTFRIDKKPDPGNWTYKSLYRGDIARYKRRGESCLGIDVKKQCITWDSSTSKRKQVQIQPERYFTKSNVKMLNTDGIPVCNKDCPSDPPAFIPVSQAEIDDSSDRKEVNPLGIYDPSTAVWLQGKGLKSADNESVNTQQTIQEPGINMNPILMTKVEEHNKKVRENPRDINAWMEFVSFQDELMRGPSPYASKGEQEVRRKSLKLILEKKLAILERAIESNPSNVDLKLARLKLCTEFWEPPALIKEWQKLIFLHPNNPEMWKKYLLFCQSQFTTFSVSKINSLYGKCLTTLAAVQDGSMVSHPLLPGTEEAMLAIFIQQCHFLRQAGHSEKAVSLFQALIDFTFFKPDSVKDLPTRGQVEFFEPFWDSGEPRIGEKGARGWKAWMHQQEKGGWVALKDDDEDDEEIDEDLEIKDKTLPKWHIWLDIEYSREARHWLPWRPDKTKKETEEDCEDPERQVLFDDLGPSLIRLSNPNLQHQLLYSFLQFLGVPCTSKLFPSSLYIAMDENNIFDSVLYDDKPLTSVDFPLSGFNSIGHMDTMLRGRRQIGHCKEGEEFIQNVFHVLFQIFTGKEKSNLSICWLQYEIYKVIQCLEAKKKKKLKAQGRRSKKLAKNFLKAPDNRNNLTLWKLYAYLEWLLGNTDDARKVFDTALCTAGTGGLKSAHLCSLSLLYAQLEVELLESIERAVMSRAVHILTKLTESGPYVPYSGQVLSVNVLKARKTYEHALQDYLSKIPVSDQDQVSDTDQLVNLVGCYALFQYLTVGIDAAVLIYTQASEKLEASGPQKYEKTGENFGIQNFPSALEAVMLLHTNLLRFHMKISVYPLNPLREALTEALKRYPSNQSLWRSYIHIQRKSHSASKARRFFDNVTRSTKSLEPWLFAIQAEQMRKKLTEKVQRCW"
     misc_feature    526..804
                     /gene="NRDE2"
                     /note="MTR4-interacting domain (MID) found in nuclear
                     exosome regulator NRDE2 and similar proteins; Region:
                     NRDE2_MID; cd22200"
                     /db_xref="CDD:412062"
     misc_feature    order(526..552,559..564,574..579,583..585,589..633,
                     640..648,652..660,682..690,700..705,709..714,721..741,
                     760..771,781..804)
                     /gene="NRDE2"
                     /note="MTR4 binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:412062"
     misc_feature    994..1989
                     /gene="NRDE2"
                     /note="necessary for RNA interference; Region: NRDE-2;
                     pfam08424"
                     /db_xref="CDD:429988"
ORIGIN      
gagcagtcggggtgggcggtggcggcggccggcccagacatggcgctgttcccggccttcgccggggctgtccagcccgagagcccccccgccggcagcaccgagggctccaggaaagaattagactggctgagtaacccgagcttctctgcagaagatgcactattactgcaccagcgcactacagaagctgccaatctcattcctgaaaaatcaccactaaaaagcaggacttcttcaagatctgagttgtcaggagaaagtgatacagatgagagtctgaaagagggaagtaagaaaaggaaaaaaaaaaagaaaaagcatcaccactataagaagacaaaaaggaaaaccaaaggggactccagtagcagtgaatcggatgtggacagtaagcacatcaagaacaaaggaagtggtagaaatggtgaaaaggaagcagcagcaaatctaggtaagaaaacatcaagtctcaccagcagtcgctctgtttggctcgatgatgtccaggctttcacaacagacaccttcagaatagacaagaaaccagaccctggaaactggacctacaaatccttgtatcgtggggacatagcaaggtataaaaggagaggggagtcctgccttggcatagatgtgaagaaacagtgtataacttgggacagttctacatcaaaaaggaaacaagtacagattcaacctgagcgctactttacaaagagcaatgtgaagatgctgaacacagatgggattcctgtttgcaataaagattgtccttctgacccacctgcttttataccagtttcccaagcagaaattgatgattcttctgacagaaaagaggtaaatcctcttgggatttatgatccatcaactgcagtgtggctacaaggaaaagggctcaagagtgcagacaatgagtctgtaaatacgcagcaaacaattcaagagcctgggataaacatgaaccccatcctaatgacaaaagtggaagaacataacaagaaagtcagagaaaacccaagagatattaatgcttggatggaatttgtttcttttcaggatgaattaatgagaggacctagcccttatgccagtaagggagaacaggaagtaagaagaaaatcactcaagttaatcttagaaaagaaactggctatattagagagggcaattgaaagtaatcccagtaatgttgatctgaaacttgccaggctgaagctttgcacagagttctgggaaccaccagctttgatcaaagaatggcagaagctaattttcttgcatcctaataatccagagatgtggaagaaataccttctgttctgtcaaagtcagttcactaccttttctgtttcaaaaatcaatagtctctatggaaaatgtttaacaacattggcagctgtacaggatggcagcatggtatcccatcctctgctgcctggcacagaagaagccatgctggctatatttattcagcagtgccactttctgagacaggctggccattctgagaaagcagtgtctttatttcaggctctgattgacttcaccttctttaaacctgacagtgtaaaagatctgccaacaaggggacaggtggaattctttgaacccttttgggatagtggagaaccacgaattggagaaaaaggagcaagaggttggaaagcatggatgcaccaacaagaaaagggtggatgggttgctcttaaggatgatgatgaggatgatgaagagatagatgaggatctagaaataaaggataaaactctccccaagtggcatatttggttggatattgaatattcccgtgaagcaaggcattggttaccttggaggccagacaaaaccaaaaaggaaactgaagaagattgtgaagatccagaaagacaggtgttatttgatgatcttggaccatctttaatccgtctttcaaatccaaatcttcaacatcaactgttgtactcatttttgcaattcctaggagttccatgtacaagtaaactctttccttccagtctctatattgccatggatgaaaataacatctttgacagtgtgctttatgatgataaaccgctgacatctgttgattttccactctctggattcaacagtattggtcatatggacacaatgctacgagggagacgtcagataggccactgtaaagaaggagaggagttcatacagaatgttttccatgttctattccagatatttacaggaaaggaaaaatctaatctgtctatttgttggttacagtatgaaatatataaggtgattcaatgtctcgaagcaaaaaagaaaaagaagctaaaagcacaagggaggagaagtaaaaagctggccaagaatttccttaaagcacctgacaaccgaaacaaccttacgctctggaaactctatgcctacctagaatggctgcttggtaacacagatgatgccaggaaggtgtttgacacagctctttgcacagcagggacaggaggattgaagagtgcccacctctgcagcctcagcctgctttatgctcagctggaagtggaactgctagaaagtatagaaagggctgttatgtcacgtgctgttcatatattgaccaaattgactgaaagtggaccatatgtgccctatagtggacaagtgttatctgtgaatgtcttgaaagctcgtaaaacatatgagcatgcactgcaagattatttaagtaaaataccagtttctgatcaggatcaggtcagtgatactgatcagctagttaacttggttggttgttatgcactgttccagtatttgactgttgggattgatgctgcagtactaatatatacacaggcttcagaaaaacttgaagcttctggtccacagaaatatgaaaaaactggagagaattttggcattcaaaattttcccagtgctcttgaagctgtcatgctactgcatacaaatttactgagatttcacatgaaaattagtgtttatcctttgaatcctctgcgagaggcactaacggaggctctgaaacggtatcctagcaaccagtctctttggaggtcatacatccacatccaaagaaagtctcacagtgctagcaaagcacgaagattttttgataatgtcacaaggtctactaagtctttagagccatggctgtttgcaatccaagcagagcagatgagaaaaaaactcacagagaaagtccagagatgttggtgaagtacattgtactattcctgaaactggattaacaaatcgcattgtagctctatttgaacacgcagttcagagtgaaaatggtacccattgtccattgctgtggagaa
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]