2025-04-02 18:20:44, GGRNA.v2 : RefSeq release 228 (Jan, 2025)
LOCUS XM_029888779 1116 bp mRNA linear PLN 12-JUL-2019 DEFINITION Pyricularia pennisetigena uncharacterized protein (PpBr36_01594), partial mRNA. ACCESSION XM_029888779 VERSION XM_029888779.1 DBLINK BioProject: PRJNA554126 BioSample: SAMN10496236 KEYWORDS RefSeq. SOURCE Pyricularia pennisetigena ORGANISM Pyricularia pennisetigena Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Sordariomycetidae; Magnaporthales; Pyriculariaceae; Pyricularia. REFERENCE 1 (bases 1 to 1116) AUTHORS Gomez Luciano,L.B., Jason Tsai,I., Chuma,I., Tosa,Y., Chen,Y.H., Li,J.Y., Li,M.Y., Jade Lu,M.Y., Nakayashiki,H. and Li,W.H. TITLE Blast fungal genomes show frequent chromosomal changes, gene gains and losses, and effector gene turnover JOURNAL Mol. Biol. Evol. (2019) In press PUBMED 30835262 REMARK Publication Status: Available-Online prior to print REFERENCE 2 (bases 1 to 1116) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (12-JUL-2019) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 1116) AUTHORS Gomez Luciano,L.B., Tsai,I.J., Chuma,I., Tosa,Y., Lu,M.-Y.J., Nakayashiki,H. and Li,W.-H. TITLE Direct Submission JOURNAL Submitted (29-NOV-2018) Biodiversity Research Center, Academia Sinica, 128 Academia Road, Sec. 2, Nankang, Taipei 11529, Taiwan COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NC_043741). COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..1116 /organism="Pyricularia pennisetigena" /mol_type="mRNA" /strain="Br36" /host="Cenchrus echinatus" /db_xref="taxon:1578925" /chromosome="2" /geo_loc_name="Brazil: Parana" /collection_date="1990" gene <1..>1116 /locus_tag="PpBr36_01594" /db_xref="GeneID:40731084" CDS 1..1116 /locus_tag="PpBr36_01594" /codon_start=1 /product="hypothetical protein" /protein_id="XP_029750735.1" /db_xref="CDD:00238" /db_xref="CDD:02998" /db_xref="GeneID:40731084" /db_xref="GO:0005783" /db_xref="GO:0016853" /db_xref="GO:0042592" /db_xref="GO:0045454" /db_xref="InterPro:IPR005788" /db_xref="InterPro:IPR011679" /db_xref="InterPro:IPR012336" /db_xref="InterPro:IPR013766" /db_xref="InterPro:IPR017937" /db_xref="PFAM:PF00085" /db_xref="PFAM:PF07749" /db_xref="TIGRFAM:TIGR01126" /translation="
MGNLKSLGLFFLAAFATTQVAAKSDVLDLVPSNFDEVVLKSGTPTLVEFFAPWCGHCKNLAPTYEELAQSFAGSKGKVQIAKVDADAEKSLGKRFGVQGFPTLKWFDGKSDKPIDYEGGRDLDSLAGFITEKTGVKPKRKLAPPSNVVMLSDSTFSKTIGGDKNVLVAFTAPWCGHCKSLAPIWEDLAQTFALEDDVIIAKVDAEAEDSKTTANEQGVQSYPTIKFWAKGQSKPEDYNGGRSEADFVKFLNEKTGTQRAAGGGVDATSGTIAALDAIVVKYTGGASLSDAAAEIKKEAEGLKDAAQVKYAQYYIRVFDKLSKNDDFASKELARLDGMLKKGGLAPAKLDELTRKTNVLRKFVEKVTGKDEL"
misc_feature 73..387 /locus_tag="PpBr36_01594" /note="PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain...; Region: PDI_a_ERp38; cd02998" /db_xref="CDD:239296" misc_feature order(160..162,169..171,358..360) /locus_tag="PpBr36_01594" /note="catalytic residues [active]" /db_xref="CDD:239296" misc_feature 448..762 /locus_tag="PpBr36_01594" /note="The thioredoxin (TRX)-like superfamily is a large, diverse group of proteins containing a TRX fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox...; Region: Protein Disulfide Oxidoreductases and Other Proteins with a Thioredoxin fold; cl00388" /db_xref="CDD:469754" misc_feature order(520..522,529..531,721..723) /locus_tag="PpBr36_01594" /note="catalytic residues [active]" /db_xref="CDD:239296" misc_feature 805..1083 /locus_tag="PpBr36_01594" /note="Endoplasmic reticulum protein ERp29, C-terminal domain; Region: ERp29; pfam07749" /db_xref="CDD:462253" ORIGIN
atgggtaacctgaagagcctcgggctcttcttcctggccgcttttgcgaccacacaagtagccgccaaatcagacgtcctcgaccttgtgccctccaacttcgacgaagtcgttctcaagtccggaacgcccactcttgtcgagttctttgctccgtggtgcggtcactgcaagaacctcgctcccacctacgaggagctcgcgcagtccttcgctggctccaagggcaaggtccagatcgcaaaggtcgacgccgatgccgagaagagcctgggcaagcgctttggtgttcagggattcccaacgctcaagtggttcgatggaaagagcgacaagccgattgactacgagggcggtcgtgacctcgacagcttggctggattcatcaccgagaagaccggcgtaaagcccaagcgcaagcttgcccctccctccaacgtggttatgctgagcgattcgactttctccaagaccatcgggggtgacaagaacgtcctggttgcctttaccgctccttggtgtggacactgtaagtccctggcacccatctgggaggaccttgcccagaccttcgccctggaggacgatgtcatcattgccaaagtcgacgccgaggccgaggacagcaagaccacagccaacgaacagggcgtccagtcttaccccaccatcaagttctgggccaagggccagtccaagcccgaggactacaacggcggccgctctgaggccgactttgtcaagttcctcaacgagaagacgggcacccagcgcgccgccggaggtggtgttgatgccacctcgggcaccatcgccgcgctcgatgccatcgtggtcaagtacaccggaggtgcttcgctcagcgatgccgccgccgagatcaagaaggaggccgagggcctgaaggacgctgcccaggtcaaatatgcccagtactacatccgggtctttgacaagctgagcaagaacgacgactttgcctccaaggagctggctcgtctggacggcatgctgaagaagggcggtctggctcccgccaagctcgacgagcttactcgcaagacgaacgtcctgaggaagtttgtcgagaaggtcactggcaaggatgagttgtga
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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