LOCUS       XM_029713150            4366 bp    mRNA    linear   VRT 01-JUL-2019
DEFINITION  PREDICTED: Salmo trutta NRDE-2, necessary for RNA interference,
            domain containing (nrde2), transcript variant X1, mRNA.
ACCESSION   XM_029713150
VERSION     XM_029713150.1
DBLINK      BioProject: PRJNA550988
KEYWORDS    RefSeq.
SOURCE      Salmo trutta (river trout)
  ORGANISM  Salmo trutta
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii;
            Salmoniformes; Salmonidae; Salmoninae; Salmo.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_042981.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Salmo trutta Annotation Release 100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.2
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4366
                     /organism="Salmo trutta"
                     /mol_type="mRNA"
                     /db_xref="taxon:8032"
                     /chromosome="25"
     gene            1..4366
                     /gene="nrde2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 6 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:115162137"
     CDS             456..4034
                     /gene="nrde2"
                     /codon_start=1
                     /product="protein NRDE2 homolog isoform X1"
                     /protein_id="XP_029569010.1"
                     /db_xref="GeneID:115162137"
                     /translation="

MTSYSCDCLRAEAINMALFPAFAGLSNTKAENAHKELEWLSNQSFRTDDALSLHQRATEKANETQSAETSTLVIPEREDKNDVQSNKKKKKEKKKKKKKHKKKSGEPSPASSGSDSDTIYPSDLLKKAESTPPSEEVQFQVEGSFVWLDDLQTPTDRPFCVDRRADRANWEYKSLYRGDIARYKRKGSSSLGLDLRSQAVSWAESGPEKKRVDRRQRPNRYFSPTVRQLLMSDGKPTLPRPPPEGTTTTLPFIPVPSCLEGEAEGGGSAKGQGSWFNPLGVYDSSTSLWLQGKGKAEHGKTEEQPSTPRDNAAVMLAERVEDFNRRLRETPTDTHTWLQFVLFQDEVAGAPGVFGDISENETERRKRSVRATLEKKVAILDRAVENNPSCVELKLERLRLCRELWEPAALLKEWKKLVFLHPNSAPLWRKYLLFMQSHFSTFSVSKVNTVYGKCLSTLAAVQDGSMVSHQVLPGTDEHMLAIFVQQCHFLRQAGHSEKAVCLFQGLLDFTFFKPDTVKDLPTRQQVEFFEPFWDSGEPRVGERGASGWRAWMTQQERGGWLQPSEQDDGDEEDQEELEVKDKTWPKWRIWLDVETSREAIHWLPWRPDKTKGQSVEDCEDPDRQVLFDDIGPSMIRLVRPDLQLCLLLSFLHFLGLPADTSCYSAPSCSLLLDDQALLGDVHHPDSPLTSYDLPVPGVSPVGHMTSLQGARRGAGLCKQGEEFVDNVFQMVLPLFSAQERAVLSLHWIQYEKLKVLRCVRGRNKKRVKSQGKRSKRLAKRLLKEPENRGRLSLWREYAHLEWLLGNLDEAHKVFDTALGLGVAGGLADPALCDLCLLYAQLEVEEAWRRDKGGAGTTVTTAMSSPAVYILTKLAEGSSYAPFLGQLAPVAVLKARKAYEQAVVSSLPGLDEGAAGQGQSKKSRRVKGLVGCYALFQYLTVGVDAADAVYNLARKRLEQHSSMSAQESASSEVMCDIQTLSSVSECEALAVQQVALLRYHTSTNVYPLSHIRLALTSALAHFASSTSLWQLYVQVENRYHSAGRARRFFHSVTKASASVVPRLFAISAEQQRKQLVDSVQRSDCYGDTLSTLPENGLSNRIRSLFENAIATEHGVHCPLLWRMYMNFLVSEGKVEQGRGIFYKALQDVPWAKGLYMDAVQLFPEHVQEFLDLMTEKELRLRVPMEEVDILLED"

     misc_feature    927..1226
                     /gene="nrde2"
                     /note="MTR4-interacting domain (MID) found in nuclear
                     exosome regulator NRDE2 and similar proteins; Region:
                     NRDE2_MID; cd22200"
                     /db_xref="CDD:412062"
     misc_feature    order(927..953,960..965,975..980,984..986,990..1034,
                     1041..1049,1053..1061,1083..1091,1107..1112,1116..1121,
                     1128..1148,1167..1178,1197..1226)
                     /gene="nrde2"
                     /note="MTR4 binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:412062"
     misc_feature    1422..2420
                     /gene="nrde2"
                     /note="necessary for RNA interference; Region: NRDE-2;
                     pfam08424"
                     /db_xref="CDD:429988"
ORIGIN      

ctcattgtacgggagtccaggattggctacgttggatctgcaatgcgtcaagcaatggcgcctaatattacccgagtagtttaggaaaacggtgtggccggacagtctactttgtatcacagagcgttttataatactataattattgctgtcgacaagacgtttctttcagtctgtctagttccacaaaatcatacatcctcatctggcaggggctcgattagagttttttgggaggaatggtggtgatcggcgattggtcaccgcaagcatacacggaactgtttacttttagtcgcggaattgaacatgacaggtgtatcaatgagggaatatataattaaaatattagaaatcctgtgctgattgagtctattttgtgaattaaactactgcattcaaaccaagatttacttttaggcaataatctcgcagtctatggaagcgcgttcgagatgacatcatattcatgcgactgtttacgcgcagaggctatcaacatggctctatttccagcttttgcaggattatcaaatacaaaagctgagaatgcacataaagaactagaatggctgagtaatcaaagtttccgcactgatgacgctctctctcttcaccaacgagccactgagaaagccaacgaaacacaatcggcagaaacaagcacactcgttataccagagagggaggataagaatgacgtccaatccaacaagaagaaaaagaaggagaagaagaagaaaaagaagaagcacaagaagaagagtggagaaccctctccagcaagcagtggctcagattcagatactatctaccccagtgacctcctaaaaaaggctgagagcactcctcccagtgaggaggtgcagtttcaggtggaggggtcttttgtgtggttggatgacctccagacccccaccgatcggcccttctgcgtagacaggagagcagaccgtgccaactgggagtacaaatcactttacagaggagatatcgctaggtacaaaaggaaaggctcttcctctctgggtttggacctgcggtctcaggccgtgagctgggctgagtctggcccagagaagaagagagtggacaggagacagagacccaaccgctacttctcccccaccgtccgccagctgctgatgtctgatggcaaacccacgctgcccagacctccaccagagggcaccaccaccaccttacccttcatccctgtgccctcctgtctggaaggtgaggcagaggggggtggctctgccaaaggccagggctcctggttcaaccccctgggggtgtatgactcctccacctccctgtggctccaggggaaggggaaggcggagcatggcaagacagaggaacaaccttctactcccagggacaatgctgccgtcatgctggctgaacgggtggaggacttcaacaggaggctgagggaaacccccacagacacacacacctggcttcagtttgtcctcttccaggacgaggtagctggggcgcctggggtgtttggtgacatctctgagaacgagaccgagcggcggaagaggtcagtgcgggccacgctggagaagaaggtagccattttggatcgagcagtggagaataatccgagctgcgtggaactgaagctggagcgactgcggctctgtagggagctgtgggagccggcagccctgctgaaggagtggaaaaagctggtgttcctgcaccccaacagcgccccactgtggaggaagtacctgctgttcatgcagagccacttcagtaccttctccgtgtcaaaggtcaacacggtatacgggaagtgtctgagcacgctggcggcggtgcaggatgggagcatggtttctcaccaggtgctaccgggcactgatgaacacatgctggccatcttcgtccagcagtgtcatttcctcaggcaggctggccactcagagaaagctgtgtgtctgttccagggcctactggacttcaccttcttcaagccagacactgtcaaggacctacccaccagacaacaggtggagttctttgagccattctgggacagtggggagccccgtgtcggggagagaggggccagtggatggagagcctggatgacccagcaggagagagggggctggctccaacccagtgaacaagatgatggagatgaagaagatcaggaggaattggaggtgaaggataaaacctggcccaagtggaggatctggttggatgtggagacatcacgcgaggccatccattggctgccgtggaggccggacaaaaccaagggccaatcggtggaggactgtgaggacccggaccgacaggtgctgtttgatgacattgggccgtctatgatccggttggtccgcccagacctccagctatgtcttcttctgtccttcctgcacttcctgggtctacctgctgacacttcctgttacagcgccccctcctgtagcctgctgctggatgatcaggctctactgggggatgttcaccaccctgactcaccactgacctcctatgacctccctgttcctggggtcagccccgtgggtcacatgacctccctgcagggtgccaggaggggggcggggctgtgtaagcagggggaggagtttgtagacaacgtgttccagatggttctgcctctgttctctgctcaggagagagctgtcctctcactacactggatccagtatgagaagctcaaggtgctgaggtgcgtgcgcggcaggaacaagaagcgtgtgaaatcccaggggaagaggagcaagcgcctggccaagcgcctgctgaaagagccagagaaccggggccgcctcagcctgtggagggagtacgcccacctggagtggctgctagggaatttggacgaggcccacaaggtgttcgacacggccctgggactgggcgtggcaggagggctggcagaccctgccctgtgtgatctctgcctgctctacgcccagctggaggtggaggaggcctggcgaagggataagggcggagcagggacgactgttacgaccgccatgtcttcaccagcggtctatatcctcaccaagctagcagagggtagttcgtatgcccccttcttgggacagttggctccagtggccgtgctgaaggccaggaaggcctatgagcaggctgtggtgagctccctgcctgggctggacgagggggccgcggggcaggggcaatccaagaagtccaggcgggtcaaaggtctggtggggtgttacgccctattccagtacctgactgtgggggtcgatgctgctgatgcagtctacaacctggccaggaagaggctggagcaacactccagtatgtcagcccaggagtcagctagcagtgaagttatgtgtgacatacagacactgagctctgtctcagagtgtgaggccctggctgtccagcaggtggcgctgctgcgctaccacaccagcaccaacgtgtacccacttagccatatcagactggcgctgacctcggccctggcccactttgcctccagcacttctctgtggcagttgtatgtgcaggtggagaaccgctaccacagcgccggcagggctcgccgcttcttccacagcgtgaccaaggctagtgccagtgtcgtgccacgcctgttcgccatcagcgcagagcagcaaaggaagcagctagtggactctgttcagaggtctgattgctatggcgacaccctctccaccctgccagagaacggcctgagcaaccgtatccgctcgctgtttgagaatgccatagcaacagagcacggggtccactgtccgttgctgtggaggatgtacatgaacttcctggtgtcagaggggaaggtggagcagggaagagggatcttctacaaggctctacaggatgtcccatgggccaagggtttatacatggacgcggtgcaactcttccctgagcacgtgcaggagttcctggacctgatgacagagaaggagctcagactgagggttcccatggaggaggtggacatactgctggaggactgatgctctaaaacccttcccacagtgcactggggcctggcttcctcagacactccactgtggatacccaaagttgtgcactgaccaatagaacagccaagtgtcctcatgaagaagagcattttacttttcaaacagacgtgtgaataaatgatgttacacttattagtgttaattcaatattttgatggattgcatatccatatttttatatttccagctttttatggattcttaatccatattttgatggatataatatcctatttttatgtcaaagatttgttttgaaacggattaaaaaagagaactgaaataaacgttttgtttcctaa

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