GGRNA ver.2 Home | Help | Advanced search    Previous release (v1)

2020-04-06 11:08:00, GGRNA.v2 : RefSeq release 99 (Mar, 2020)

LOCUS       XM_029494347            6594 bp    mRNA    linear   VRT 16-JUN-2019
DEFINITION  PREDICTED: Echeneis naucrates titin-like (LOC115036223), mRNA.
ACCESSION   XM_029494347
VERSION     XM_029494347.1
DBLINK      BioProject: PRJNA548465
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Echeneis naucrates (live sharksucker)
  ORGANISM  Echeneis naucrates
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Neoteleostei;
            Acanthomorphata; Carangaria; Carangiformes; Echeneidae; Echeneis.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_042532.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Echeneis naucrates Annotation
                                           Release 100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.2
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 44% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..6594
                     /organism="Echeneis naucrates"
                     /mol_type="mRNA"
                     /db_xref="taxon:173247"
                     /chromosome="22"
     gene            1..6594
                     /gene="LOC115036223"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 Proteins, and 7% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:115036223"
     CDS             1..6594
                     /gene="LOC115036223"
                     /codon_start=1
                     /product="titin-like"
                     /protein_id="XP_029350207.1"
                     /db_xref="GeneID:115036223"
                     /translation="
MGDAQSAQREESGKAEDTEDKPFKNNKQISEINGKADSATAQVNAHCEDEMAAEDEDISKTATSLKGEVENVEMNGKEAANEADAHEDVPLEMTEMDVKQNDINEGFRRFFRNIGLKLTVKKGTAENAEMAADEMNQEEFVEVATEETKSEEHTDLKTAPETYDNDSTTCPTLTDATSEDVLQNAEEKTTDAKEVAESDIVDASPAHDDEKVQQDAALDEDQQPTSESEVVVSPIKRFFTTGIFSGLQKKKKLTEDEISEKELMEIERKHTVEEAEGCVNAQQEKEEISLGVEADPDETGQKDNKLKEEILPAASAQATDDAVSITVNEPEILSYQEKVQASPLKRLLSGSNLKKLSKKQKGRRSSDSRLSDFGDQFSDQLLSFKEPTEHQKEESPAAGEEGAWASFRKLVTPKKHPKTSAETQIPGSEEQTKPSDREQISSYSTEEGKKRKDSSVSWDAVLCGSGRRRSRSRKTSDSEDETPPAENDNKKHQSPPESSNEVDESSHKKSGSPSEADGGSTWKSFKKLVTPKRKLKDEEENRDTAQSDSEVPRDDSSFSIKKLLPGRKKSKSSEKQDQTSSDEADKDVASADEDSETPAVVPLSEFDAVETGVHIQTQAAVESHVPKEAEYELQHDLQDHTAEPLVPFDNLPTEIKKAQDEQDVLENEGSTTPTSNEEAEDLTEIISKHQQLSDIPEEGIITETMATPASAAEETARDDTLAEDLIEITSEAITAPEPVDVTLTDETEMISAVSQLSESSKTSGNTTPVPEEQDVKQTETLLHQVVETISTSPKEGLLCSDEINPERIVGSVSHQVLEMFLKEEPAILEIHRSSDATAINIGLNVEELDAANKHAVKPQRESVSEVNQSVSKESVPEVPSVRLDTAEIGVDEVHEVSVSHPEESIKELDSTDDSQTTEAVFLEALPEDEEIVADEGSVVGLHQEEIVADKGSVVQICQEEIVAEEGSVVQIPQEEEIVADEGSVVGLHQEEIVADKGSVVQICQEEIVAEEGSVVQLPQEEEIVAEEGSVVQLPQEEEIVAEEGSVVQIPQEEEIVADEGSVVRICQEEIVAEEGSVVQLPQEEEIVAEEGSVVQIPQEEEIVAEEGSVVQIPQEEEIVADEGSVVQIPQEEEIVADEGSVVGLHQEEEIVADEVSVVGLHQEEIVADEGSVVQLPQEEKPLEMDSHKAESAATQEGESKDGGVEQEVQTLTQNEDQVLQNITDQVEVEDKDKLPVEELQEAAMLNSEGGGVQLHEREIISEDSPATETHESKEETGHLTEDNVEAEREDEPQADDTEAEHVEEADVLETVRASLLDSEEGGAHLIATETGTPKEESVQLPEGEVPSKDIPTQSGTDETKEATENVSEISAEPENKELKTIALNTDNHQVAEVLQTMQEPTPASEEGGVQLLDKDEISETTAEVETVPDELKVETESLVDDDKPVDALETEHAPEIEAEAAQVTNLVSEEDGVQPPEKTDISEAIPEAETLDPTREPESNAEPEEDVPEVSLSRVNDVETEAEAEVKESMGTESGEEGRAEKPEKQISAEGDPEPDSINATASVTEEIQAELSRALEHNEEKPREITPQEDRAVQEDNATETVGELQTLAAVNGETADVQVRENVFSEMTPPTCVNNAEVTHEPEHEVHLSTVHVSIEGELPAAEVKNAVFEDALVSQVVTCYLKEASAAIPDASTAKTSENHKALIDTETSVQEFEETVMSAAPQDDDEVTESAEEGREVPTAQIEDSSSIQVQVVDVDVKSAQTIVDRVLQVGVTETKEVIDVCQETFEEVDHLSATSQTEELINEEKVTVREVIQHVKEKLPAAESLNVAMTEEAAAAAQQEVEDLTQTFVIPGSSDIICNPKEDLEETKPQLETSEADFKTEEVKLPSEELDRKKISEEAQISQMTQSQIVTHSNTGLVVPQNAGIISSVGSVDSPSSISLEFKINIQFGQAKAAVPPQPAEEKDELVKKTDVSQVEPEKEIIPPQSVDSQRQTEPTEASGQATEIRETVHSATAEKMVVMNQPILLDMGVQAIETVEPVEEIKSTERVTLNVQATETIQPVRQTEKREVFLSQPVLSEAVQETKPKEPVKPTKEENEDVWLDAEEEIYSQKETESSVERAEEPRKAESDQEEKTATPRGETAPAAKTEDEESQEEILKADATCEIESEGEDFAFALEQPETASASVSKLEED"
ORIGIN      
atgggagacgctcagtctgcgcagcgggaggagagcggaaaagcggaggacactgaagacaagccattcaaaaataacaagcaaatctctgagatcaatggaaaagcagacagcgccacagcacaagtaaacgctcactgcgaggatgagatggctgcagaggacgaagacatttcaaaaacagcaacgtcacttaaaggggaagtggaaaatgttgaaatgaatggaaaggaagcagcaaatgaagccgatgctcatgaagacgtccctctggaaatgactgaaatggatgtgaaacagaatgatatcaatgaaggttttaggaggtttttcaggaacattggtctgaagctgacagtgaaaaagggcacggctgaaaacgctgaaatggcagcagatgagatgaaccaggaagaatttgtggaagtcgccacagaagaaaccaaaagtgaagagcatacggacctgaaaacagcgccggagacttatgacaacgattccacaacatgtcccaccctgacggatgcaacatcggaagacgttctacaaaatgcagaggagaaaacaacagacgccaaagaggtggctgaatctgatatcgtagatgcttcacctgcacatgacgatgaaaaggtgcaacaggatgccgcactcgatgaagaccaacagccaacatccgaatcagaggttgttgtgtctccaattaaaaggtttttcacaactggaatcttctctggactgcagaagaaaaagaagctcacggaagacgagataagtgagaaagagctgatggagatagagcgaaagcacacagtggaagaagcagagggatgtgtaaatgcacaacaagaaaaggaggagatcagtttgggtgttgaggcagatccagatgagacgggacagaaggacaacaaacttaaagaggagattcttcctgcagcatcagctcaggcgacagacgatgcagtaagcatcaccgtcaacgagcctgaaattctcagttatcaagagaaagttcaagccagccctctgaaaaggctcctgtcggggtctaatttaaagaaactctccaaaaagcagaaaggcaggagatcaagtgacagtaggctgtcagactttggagatcagttttcagatcagctcctgtcatttaaggagccaaccgagcatcagaaggaggagagccctgcagcaggagaggagggagcgtgggcttctttcagaaagcttgtgactccaaaaaagcacccgaagacgtccgctgagacacaaatcccaggctcagaggagcaaacgaaaccaagtgacagggagcaaatatccagttacagcacagaagaaggcaaaaaacgaaaagactcttctgtgtcgtgggacgccgttctgtgcggatctgggaggagaaggagtcgaagtaggaagacatcagactctgaggatgaaacgcctccagctgaaaatgacaacaagaagcatcagtcgccaccagaaagttccaacgaggtcgatgaaagttcccacaaaaaatcaggaagtccttcagaggctgacggaggatctacgtggaaatcctttaaaaaactggtcaccccaaaaaggaagctcaaggacgaggaggaaaacagagatactgcacagtctgacagtgaggttcctcgggatgattcctcgttctcaataaagaaacttctcccagggagaaaaaagagcaagtcctctgaaaagcaggaccaaacatcttcagatgaggctgataaggatgtagcttcagccgatgaagattcagagacacccgctgtggtcccgctgtctgagtttgatgcagttgaaaccggagttcacatacaaacgcaggctgcggtagaaagccacgtcccgaaggaagcagagtatgaactgcagcacgacctccaggatcatacggccgaacctctcgtgccttttgacaacctgccaactgagataaagaaagcccaagacgagcaggatgttttagaaaatgagggatctaccactcctacttcaaatgaagaagcagaagaccttacagaaataatcagtaaacatcaacagctcagtgatattccagaggagggcataattacagagaccatggccactccggcttcagccgccgaagagacagcacgagacgacacactcgcagaggatctgatagaaatcacgtctgaggccataactgctccagagcctgtggacgttaccctgacagacgaaactgagatgatctctgcagtttctcagctatcagagtcttcaaaaacatctggcaacacaaccccagtcccagaagaacaggatgtcaaacagacagagacgctcctgcatcaggtggttgaaaccatctccacgagcccaaaggaaggcctgctgtgctcagatgagattaaccccgaaagaatagttggatccgtctcacatcaagtgctcgaaatgtttctaaaagaggagccagcaattctggaaatacacaggagctctgatgcaactgccattaacattggcctgaatgttgaagagctggacgcagcgaataaacatgcagtaaaaccccaaagagagagtgtatctgaagtcaaccaaagtgtttccaaagaaagtgtacctgaagttccttctgtgagattggacactgctgaaattggtgtagatgaagttcatgaggtcagtgtttcacatccagaagaaagtataaaagaattagacagcacggatgacagccagacgactgaagctgtgtttttagaagctttacctgaagatgaagagattgttgcagacgaaggttctgtagtcggactccatcaagaagagattgttgcagacaaaggttctgtggtccaaatctgtcaagaagagattgttgcagaggaaggttctgtggtccaaatccctcaagaagaagagattgttgcagacgaaggttctgtggtcggactccatcaagaagagattgttgcagacaaaggttctgtggtccaaatctgtcaagaagagattgttgcagaggaaggttctgtggtccagctccctcaagaagaagagattgttgcagaggaaggttctgtggtccagctccctcaagaagaagagattgttgcagaggaaggttctgtggtccaaatccctcaagaagaagagattgttgcagacgaaggttctgtggtccgaatctgtcaagaagagattgttgcagaggaaggttctgtggtccagctccctcaagaagaagagattgttgcagaggaaggttctgtggtccaaatccctcaagaagaagagattgttgcagaggaaggttctgtggtccaaatccctcaagaagaagagattgttgcagatgaaggttctgtggtccaaatccctcaagaagaagagattgttgcagatgaaggttctgtggttggactccatcaagaagaagagattgttgcagacgaagtttctgtggtcggactccatcaagaagagattgttgcagatgaaggttctgtggtccagctccctcaagaagaaaagcctttagaaatggactctcacaaagcagaatcagctgctacacaggaaggtgaaagtaaagatggaggtgtagagcaggaagtccaaactctgacacaaaacgaagatcaagtcttacaaaacatcacagatcaagttgaagtggaggataaagataaactacctgtggaggagttacaagaagctgccatgttaaattcagaggggggaggagtccaactgcatgaaagggaaataatatccgaagacagtcctgcaactgaaacacatgaatccaaagaggaaacagggcatctcactgaagataatgttgaggcagagagggaagatgaaccccaagcagatgatactgaagctgagcacgttgaagaggcagacgttttagaaacggttcgggcatccctgttagattcagaggaaggcggtgctcatctgattgctacagaaacaggaacacccaaagaagaaagtgttcaactgcctgaaggggaagtaccatcgaaggatattcccacacaaagtgggacagatgaaacaaaagaagcaacagagaatgtctctgaaattagtgccgagccagaaaacaaagaactgaagacaatcgctctaaataccgacaatcatcaagttgcagaagttttacaaactatgcaagaacccacaccagcttcagaggagggtggtgtgcaattgcttgacaaagacgagatatcagagaccacagcagaggtagaaactgttccggatgaactcaaagtggaaactgaatctctcgttgatgacgataagccagttgatgctttagaaactgaacatgctccagaaatagaagcagaagctgcacaagtaacaaacttagtctcagaagaagacggtgtccaaccacctgaaaaaacagacatatcggaggcaattccagaggcggaaactttagatccaacacgggaacctgaaagcaacgcagagccagaagaagatgtgccagaagtttcactgtctcgtgtaaatgatgttgaaactgaagcagaggctgaagtgaaggaatctatggggacagaaagtggtgaagaggggcgtgctgagaaacctgagaagcaaatatcagctgaaggtgatcctgaaccagactctataaatgccactgcctcagttacagaggaaatacaggcagaactgagccgggctttagagcataatgaggagaagccaagagagatcacgccacaagaagatcgggctgtgcaggaagacaacgccactgaaactgtaggtgagctacaaacattagcagctgttaacggggaaacagctgatgttcaggtcagagaaaatgtcttttctgaaatgaccccgccgacttgtgtaaacaatgctgaagttacacacgaacctgagcatgaggtgcatctaagcacagttcacgtcagtattgaaggggaacttccagcagccgaggtgaagaacgctgtgtttgaggatgccttagtcagccaggtggtcacatgctatctgaaagaggcctcagctgccataccggacgcttcaacggcgaagacatcagaaaatcacaaagctttgatagacacggaaacaagtgtgcaagagtttgaggagacggtcatgtctgcggcaccgcaggatgatgatgaagtgactgagagcgcagaggaaggcagagaggtcccaacagcacagattgaggacagtagcagcattcaggtgcaggtggttgacgtcgatgtgaaatcagcccagacgattgttgaccgagtgcttcaggtcggggtgacagagaccaaagaagttatagatgtttgccaggaaacatttgaggaagtggaccatctctctgccacatcacagactgaagaattaattaacgaggaaaaggtgactgtccgagaagtcattcaacatgtgaaggaaaaattaccagcagctgaatcgctgaatgtcgccatgacagaagaggccgcggctgctgcacagcaagaggtggaggatctcacacaaacattcgttattcctggaagttcagacataatctgtaatccgaaggaggatttggaggaaactaaaccccaactggaaacctctgaagcagatttcaaaactgaagaggtgaaattaccatcagaggaattagacagaaagaaaattagtgaggaagcacaaatatcacagatgacccagagccagattgtaacccacagcaacactggattagtagtcccacaaaacgccggaataatttcctctgtaggaagtgtggattctccctctagtatttccttagaattcaaaataaacatacagtttgggcaagcaaaggcagcagttcctccacagcctgcagaagaaaaagatgaactggtaaagaagacggacgtgtctcaagttgaacctgaaaaggaaataattcccccacaaagtgtcgacagccagagacagacagagccgactgaggcgtctggtcaggcaacagaaatcagagaaacagtgcactcagccacagcagaaaaaatggtggtcatgaatcaaccgatactgctggatatgggcgtgcaggccatagaaacagtagaaccagtggaggaaatcaaatccacagagagagtgaccctcaacgtccaggcgacagagacaatacagcctgtgaggcaaacagagaagagagaggtgttcctgagccagccggtgctgtctgaagctgtccaagaaacgaaaccaaaggaacccgtgaagccaaccaaggaggaaaatgaagatgtgtggctggatgccgaggaagaaatttactctcaaaaggaaacagagtcgtcggttgaacgggcagaggaacctcgaaaggcagaaagtgaccaggaggaaaagacggcgacacctcgaggtgaaacagctcctgctgccaagactgaggacgaggaaagtcaagaagaaatcctcaaagctgacgcaacgtgcgaaattgagagtgaaggtgaagattttgcttttgcactcgagcaaccggaaactgcaagcgcaagcgtcagtaagctcgaggaggattaa
//

by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]