GGRNA ver.2 Home | Help | Advanced search    Previous release (v1)

2024-03-29 19:56:48, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_029081496            4936 bp    mRNA    linear   MAM 08-MAR-2021
DEFINITION  PREDICTED: Ornithorhynchus anatinus protein argonaute-4
            (LOC100079205), mRNA.
ACCESSION   XM_029081496
VERSION     XM_029081496.2
DBLINK      BioProject: PRJNA534073
KEYWORDS    RefSeq.
SOURCE      Ornithorhynchus anatinus (platypus)
  ORGANISM  Ornithorhynchus anatinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Monotremata; Ornithorhynchidae; Ornithorhynchus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_041743.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 8, 2021 this sequence version replaced XM_029081496.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Ornithorhynchus anatinus Annotation
                                           Release 105
            Annotation Version          :: 105
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.6
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4936
                     /organism="Ornithorhynchus anatinus"
                     /mol_type="mRNA"
                     /isolate="Pmale09"
                     /db_xref="taxon:9258"
                     /chromosome="16"
                     /sex="male"
                     /tissue_type="liver; muscle"
     gene            1..4936
                     /gene="LOC100079205"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 33 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 7 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:100079205"
     CDS             16..2601
                     /gene="LOC100079205"
                     /codon_start=1
                     /product="protein argonaute-4"
                     /protein_id="XP_028937329.1"
                     /db_xref="GeneID:100079205"
                     /translation="
MEALGPGPPTSLFQPPRRPGLGTVGKPIRLLANHFQVQIPKIDVYHYDVDIKPEKRPRRVNREVVDTMVRHFKMQIFGDRQPGYDGKRNMYTAHPLPIGRDRVDMEVTLPGEGKDQTFKVSIQWVSVVSLQLLLEALAGHLNEVPEDSVQALDVITRHLPSMRYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWNMMLNIDVSATAFYRAQPIIEFMCEVLDIQNINEQTKPLTDSQRVKFTKEIRGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLENGQAMECTVAQYFKQKYSLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLVKSNSMVGGPDPYLKEFGIVVHNEMTELTGRVLPAPMLQYGGRNKTVATPNQGVWDMRGKQFYAGIEIKVWAVACFAPQKQCREDLLKSFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFKHLKMTYVGLQLIVVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINAKLGGINNVLVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDGHPSRYCATVRVQTSRQETSQELLYSQEVIQDLTNMVRELLIQFYKSTRFKPTRIIYYRGGVSEGQMKQVAWPELIAIRKACISLEEDYRPGITYIVVQKRHHTRLFCADKTERVGKSGNVPAGTTVDSTITHPSEFDFYLCSHAGIQGTSRPSHYQVLWDDNCFTADELQLLTYQLCHTYVRCTRSVSIPAPAYYARLVAFRARYHLVDKDHDSAEGSHVSGQSNGRDPQALAKAVQIHHDTQHTMYFA"
     misc_feature    91..480
                     /gene="LOC100079205"
                     /note="N-terminal domain of argonaute; Region: ArgoN;
                     pfam16486"
                     /db_xref="CDD:435368"
     misc_feature    511..663
                     /gene="LOC100079205"
                     /note="Argonaute linker 1 domain; Region: ArgoL1;
                     pfam08699"
                     /db_xref="CDD:430160"
     misc_feature    664..1026
                     /gene="LOC100079205"
                     /note="PAZ domain, argonaute_like subfamily. Argonaute is
                     part of the RNA-induced silencing complex (RISC), and is
                     an endonuclease that plays a key role in the RNA
                     interference pathway. The PAZ domain has been named after
                     the proteins Piwi,Argonaut, and Zwille; Region:
                     PAZ_argonaute_like; cd02846"
                     /db_xref="CDD:239212"
     misc_feature    order(820..822,865..867,907..909,919..921,973..975,
                     994..996,1000..1002)
                     /gene="LOC100079205"
                     /note="nucleic acid-binding interface [nucleotide
                     binding]; other site"
                     /db_xref="CDD:239212"
     misc_feature    1165..2472
                     /gene="LOC100079205"
                     /note="PIWI domain, Argonaute-like subfamily. Argonaute is
                     the central component of the RNA-induced silencing complex
                     (RISC) and related complexes. The PIWI domain is the
                     C-terminal portion of Argonaute and consists of two
                     subdomains, one of which provides the...; Region:
                     Piwi_ago-like; cd04657"
                     /db_xref="CDD:240015"
     misc_feature    order(1576..1578,1588..1590,1624..1635,1642..1644,
                     1666..1668,1675..1677,1687..1689,1699..1701)
                     /gene="LOC100079205"
                     /note="5' RNA guide strand anchoring site [active]"
                     /db_xref="CDD:240015"
     misc_feature    order(1780..1782,1786..1788,2026..2028,2440..2442)
                     /gene="LOC100079205"
                     /note="active site"
                     /db_xref="CDD:240015"
ORIGIN      
gccgccgccgccgccatggaagcgctgggacccggacctccaaccagcctgttccagccgccccgtcgccctggcctcggaactgtggggaaaccaatccgcctcctagccaatcattttcaggtccagattcctaaaatagacgtctatcactatgatgtggatatcaaacccgaaaagcggccccggagagtcaacagggaggtggtggatacgatggtgcggcacttcaagatgcagatatttggcgatcggcagcctggctatgatggtaaaagaaatatgtatacagcccacccgctgcctattggacgggatagggttgatatggaggtgacacttccaggtgagggtaaagaccagacatttaaagtgtccattcagtgggtgtcagttgtgagccttcagctgcttttggaagctttggccgggcacctgaatgaagtacctgaagattctgtccaggcactagatgttatcacaaggcaccttccctccatgaggtacactcctgtgggccgttcattcttctctccccctgaaggctattaccaccctctaggagggggcagggaggtctggtttggtttccatcagtctgtgagacccgccatgtggaatatgatgctcaatattgacgtatctgcaacagctttctaccgggcccagcctatcattgaatttatgtgtgaggttttggacatccagaacatcaatgagcaaacaaaacctctgactgactcccagcgcgtcaagtttaccaaagaaatcagaggactcaaagtagaggttacccactgtggacagatgaaacggaaatatcgagtatgtaatgtgaccagaaggccagctagtcaccagactttccccctccagctggaaaacggtcaagctatggaatgtacagtagcccagtattttaagcaaaagtatagccttcaactgaagtatccccatcttccctgtcttcaagtaggacaggagcaaaaacacacttatctgccacttgaggtctgtaatattgtggcaggacagcggtgtatcaagaagctaacagacaatcagacatccactatgatcaaggcaacggcaagatcagctcccgacagacaggaggaaatcagtagactagtcaagagcaatagcatggtgggtggacctgacccctacctgaaggagtttggtatcgtcgttcacaatgaaatgaccgagctaacgggccgggtgctcccagcacctatgttgcagtatggaggccggaataaaaccgtagccacaccaaatcagggggtctgggatatgcgagggaagcagttttacgctggcatagaaattaaagtgtgggccgtggcctgtttcgctccccagaaacaatgcagagaagacctgttgaagagtttcacggatcagctgcgcaagatctccaaggatgcagggatgcccatccagggccagccgtgtttctgcaaatacgcccagggcgctgacagcgtggagcccatgttcaaacatttgaagatgacgtacgtcggtctgcagttgattgtggtgatcctccctggaaagacccctgtatacgcggaggtgaagcgggttggggacaccctcctaggaatggccacgcagtgcgtccaagtgaagaatgtagtgaaaacttctccccagaccctctccaacctctgcctgaaaataaatgcaaagctcggcggaatcaacaatgtcctcgtacctcatcaaaggccttcggtgttccagcagcccgtcatcttcctgggagcagacgtcactcaccccccagccggagatgggaagaagccctcgatcgcggccgtggtgggcagcatggacggccaccccagccggtactgcgccaccgtaagggtgcagacctctcgccaggagacctcccaggagctcctgtacagtcaggaagtgatccaggacctgaccaacatggtccgtgagctgctgatccagttctacaaatcgacacgcttcaaacccactcgcatcatctattaccggggaggggtctccgagggccagatgaaacaggtagcttggccagaactaatagcaattcggaaagcctgcatcagcctggaagaagattaccgaccaggaataacttacattgtggtgcagaaaaggcatcacacccggctcttctgcgcagacaaaacggagagggtggggaaaagtggcaatgtgcccgcaggcacgactgtggacagcacgatcacacatccgtctgaatttgacttttacctctgtagtcatgcaggaattcagggaaccagccgcccttcacactatcaggttttgtgggatgacaactgcttcacggcggatgaactacagctgctgacctatcagctgtgtcacacctacgtgcgctgcacccgctcggtctccattccagcccccgcgtactatgctcggctggtagcgtttagggcaagatatcatctggtggataaggatcatgacagcgccgagggaagccatgtgtcaggacagagcaatggccgcgacccccaggctctggccaaagcagtgcaaatccaccacgatacccagcacacgatgtattttgcctgagagcctctgaggaggctcaggggatcttggcacaccgtgcgctcccgaaacgtttggaatgcctactgcttctggatagggccaagttgacttcagacggtcttcctaccagcagctctgaacagtcgcactgaatctactcttcacggcaatgtctgatgcaccaacagaattgagccatttggtttttttcgtttgttttatgggtttttggttttttggtgttgttttttttttttcattttcgttgtttttgaaattcatagactgtcttttctgatgcattggactgaattttttacctcaaagcattaaggctgatcattctgaaatctttaaaggacttggcatgaaaggtttctattgaatattttgctagctacagtttaagttgatcacctcatccccgtagtacatcgagatggagttattccctggtagtccatactcaccaagcagggtgaacgcataagcgggagaaaaaagaaaacacagaatcatttaacttcagttcaacttaacacagttctattgtgtggggccatagactttttaacggagattttagacttcactactgtaaatgcctttgtcaagcattagtttcagaaggtattgcagtcttgtcggttttactagtttatctttttaaatctctgcagacttgtgctggtgcaagtacaggctgcaaagcaattgcactatatatattactgcagattcaaataggcggttcttgttcggtaaacctgtgaatgtgtaacataaccagatagtaacacctgtgagcaggttttaattattataatggttacagataacactgccataggatggttaaaagtaatcatacgttttcccccccttaaaaaaaaaattagcttttagatatttttccaagttttacagaagtgcccattttatgctgctgtgtggtttgataaatctaaatgatttttaaacttttcttgtaggaggttaactttggcaataaacacttttctttaaaagcccccctccccccacccatccccaaaacatcccttacccatccccagcgatgtagttttctagtggagggttgtgcatgaattgatccggttttgcttgtgacttcacaatctggcaatttctgaactcaatcagaaaagacgcacttccatgcctttttaagaattatttttacatgttttatattcactgttggtgtcctgtctactacttctttttaaataagctacaacctgggcgttgcacgttggaaaggctttgccaatctgtacagttctcaatgtatttttgtggtgatagcaacctgaagacttgtaccagcattttaaaacatttcccccgcccccacctcccaaaatcaaggttgcaaccacaatgacataaaatggcatgtttaaaaaaaaaaaaaagataaaaagataaaaaaaaaatgtacatttaaactattgatcctgtcccagcctagaaataattcttgagtcttgatttcccccccacacccctcacctccttggcttggcagtttaggctaaaaattgtagagagaggcttgatttcacttgcagctttcggctcctacaaacctaacattgagattggattctttttcatgttaaaagaaaaaacaaagggaattgatctaaaaccagcattaaaaagaaagttgagcttgttgctatatttaatattggccacacaacgtaacagggaaactgttacctgagattgcagttgtccaaaaccagtagatctgctaaaatttcttagcagttcaaatatttgtaaactagccttctctaaagctcagctatataaaaagctggggtttttttacccttttttaacccagtcttttaaacaagcttgtaaatacatcgaagtttacatttctaaatgctgtctttcagcacattagtaggcgctgaaaccagtcttcagagcagttttataaccttctttcggagtagtttcatcataccgagtttgaccatattttttttcctctgtcgaaaacaggactgaagcaagctctcggctcctgaggcacagggaggcaggtttagttgagattcttccttttttttttattgttatttcctaaacttttcctcttttgaaaaatacctcacttggataataaaaatcaggacatgtcggtgagaggctggctgctgcttcagcttagatggctgcttttattaatacttgttcagggagagcacagaaataaacccttcagcatgtactctgacctagcggaaggagaatttaggcaccttgaggaaaaattgagcacccctgagttgtaggaacagaagatggg
//

by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]