2024-05-02 06:30:34, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_029080887 5304 bp mRNA linear MAM 08-MAR-2021 DEFINITION PREDICTED: Ornithorhynchus anatinus protein argonaute-3 (LOC100079273), transcript variant X1, mRNA. ACCESSION XM_029080887 VERSION XM_029080887.1 DBLINK BioProject: PRJNA534073 KEYWORDS RefSeq. SOURCE Ornithorhynchus anatinus (platypus) ORGANISM Ornithorhynchus anatinus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Monotremata; Ornithorhynchidae; Ornithorhynchus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_041743.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Ornithorhynchus anatinus Annotation Release 105 Annotation Version :: 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.6 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5304 /organism="Ornithorhynchus anatinus" /mol_type="mRNA" /isolate="Pmale09" /db_xref="taxon:9258" /chromosome="16" /sex="male" /tissue_type="liver; muscle" gene 1..5304 /gene="LOC100079273" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 39 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns" /db_xref="GeneID:100079273" CDS 49..2631 /gene="LOC100079273" /codon_start=1 /product="protein argonaute-3 isoform X1" /protein_id="XP_028936720.1" /db_xref="GeneID:100079273" /translation="
MEIGPAGPVGAQPLLMVPRRPGYGTMGKPIKLLANCFQVEIPKIDVYLYEVDIKPDKCPRRVNREVVDSMVQHFKVTIFGDRRPVYDGKRSLYTANPLPVATTGVDLDVTLPGEGGKDRPFKVSIKFVSRVSWHLLHEVLTGRTLPEPLELDKPISTNPVHAVDVVLRHLPSMKYTPVGRSFFSAPEGYDHPLGGGREVWFGFHQSVRPAMWKMMLNIDVSATAFYKAQPVIQFMCEVLDIHNIDEQPRPLTDSHRVKFTKEIKGLKVEVTHCGTMRRKYRVCNVTRRPASHQTFPLQLENGQTVERTVAQYFREKYNLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLVRSANYDADPFVQEFQFKVRDEMAHVTGRVLPAPMLQYGGRNRTVATPSHGVWDMRGKQFHTGVEIKMWAIACFATQRQCREEILKGFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVIKTSPQTLSNLCLKINVKLGGINNILVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPSRYCATVRVQRPRQEIIQDLASMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFRQVLYYELLAIREACISLEKDYQPGITYIVVQKRHHTRLFCADRTERVGRSGNIPAGTTVDTDITHPYEFDFYLCSHAGIQGTSRPSHYHVLWDDNCFTADELQLLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHVSGQSNGRDPQALAKAVQIHQDTLRTMYFA"
misc_feature 265..549 /gene="LOC100079273" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 577..729 /gene="LOC100079273" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 730..1092 /gene="LOC100079273" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(886..888,931..933,973..975,985..987,1039..1041, 1060..1062,1066..1068) /gene="LOC100079273" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1225..2502 /gene="LOC100079273" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1636..1638,1648..1650,1684..1695,1702..1704, 1726..1728,1735..1737,1747..1749,1759..1761) /gene="LOC100079273" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(1840..1842,1846..1848,2056..2058,2470..2472) /gene="LOC100079273" /note="active site" /db_xref="CDD:240015" ORIGIN
cgcaccgggccccgggctgtctcacagcagcctcccccagctccatgaatggaaatcggccccgcaggacccgttggggcacagcccctgctcatggtgccaagacgtcctggctatggcaccatgggcaaacccattaaactgctggccaattgcttccaagttgaaatcccaaagattgacgtctacctctatgaggtggatattaaaccagataagtgtcctcggagggtgaacagggaggtggtggattcaatggttcagcattttaaagtaacaatatttggggaccgcagaccagtttatgatgggaaaagaagcctttatacagctaatccactccctgtagcaactactggggtggatttagacgtaacattgccaggagaaggtggaaaagatcgccccttcaaggtgtcaataaaatttgtatctcgagtgagttggcacctgctccatgaagttctgacaggaaggaccttgcccgagcctctggaactagacaagccaatcagcacgaaccctgttcatgccgttgatgtggtgctacgacatcttccctccatgaaatatactcctgtgggtcgctcctttttctccgctccagaaggatatgatcaccctctgggaggaggcagagaggtatggtttggattccatcagtctgttcggcctgccatgtggaaaatgatgcttaatattgatgtttctgccactgccttctacaaagcacaacctgtaattcagttcatgtgtgaagttctcgacattcataatattgatgaacaaccaagacctctgactgattctcatcgggtaaaattcaccaaagagataaagggtctaaaggttgaagtgactcattgtggaacaatgagacggaaatatcgtgtttgtaatgtaacaaggagacccgccagtcatcaaaccttccctttacagttagaaaatggccagactgtagagagaacagtagcacagtatttcagagagaagtacaacctccagctgaaatatcctcatcttccctgtctacaagtgggacaggagcagaaacacacctacctgcctctagaagtgtgtaatattgtggcaggtcagcgatgtatcaagaagctaacagacaatcagacatccacgatgatcaaggcaacagcaagatctgccccagatagacaagaggaaattagcagattggtaagaagtgcaaattacgatgcagacccttttgttcaggagtttcagtttaaggttcgggatgaaatggctcatgtgacaggacgtgtacttccagctcccatgctgcagtatggagggcggaatcgaacagtagccaccccaagccatggagtatgggatatgcgaggaaagcaattccacactggagtggaaatcaagatgtgggctattgcgtgttttgccacccagaggcagtgccgagaagaaatactgaagggtttcacggaccagctgcgcaagatctccaaggacgcggggatgcccatccagggccagccgtgcttctgcaaatacgcccagggcgccgacagcgtggagcccatgttccgccatctaaagaacacctattcgggcctccagctcatcattgtcatccttccggggaaaacccccgtctacgcggaggtgaaacgcgtaggagacacactgttggggatggcgactcaatgtgttcaagtgaagaacgtaataaagacgtctcctcaaaccctctcaaacctgtgcctaaagattaatgttaaattagggggaatcaataatatccttgtacctcatcaaagaccgtctgtgttccagcaaccagtgatctttttgggagcagatgtcactcatccacccgctggggatggaaagaagccttctattgctgctgttgtaggtagtatggatgcccatccaagcagatactgtgccacagtaagggtccagagaccccggcaggagatcatccaggatctggcctccatggttcgcgaactcctcatccagttctataaatcgacaaggttcaaacccacacggatcatcttctatcgggatggcgtttccgaagggcagttccggcaggtactgtattatgaactgctggcaattcgggaggcctgcatcagtttggagaaagactaccaacccggaataacttatatagtggtgcagaaacgacatcacactcgactcttttgtgccgaccgaaccgaaagggtgggaaggagcggcaatatcccagctggaaccacagtagatacagacattacgcacccctacgagtttgatttttacctctgtagccatgctggaatacagggtaccagccgaccctcgcactatcacgttttgtgggatgataactgctttacagctgatgaacttcagctgctgacctaccagctctgccacacgtatgtgcgctgcacacgatctgtttctatacccgcaccagcgtattacgctcacctagtagcattcagagcaaggtaccatcttgtggacaaagagcatgacagtgctgaaggaagtcacgtttcaggacagagtaatgggcgagacccacaagctcttgccaaggccgtacagattcaccaagacaccttacgcacgatgtacttcgcttaaaaaaaaaaaaaagcctgaatacacttaaggaagaactgaaaaacaaatccacatacaacgtatgtttccagtggggtcagtttagggggcatgcctccagccatgcagaatccaacactgtgcggaggccaggggcttatcctaaattgatacaaggaagattgtttacttcatcgaggaacacagcactattatgcaatatgaaaccagccaactgcttttttgtgcggtctcctgtaggaagtatcgcagtcattttatttgattatttttatttcttgtagttgaacccttttaatgcctttacctcaagttgcttggcagcacaactatctttgcaaaaaaaaaaaaaagtaaatttaaagatggtttaaaaaaaaaaaacacaacacctataggaacaatcgacgattgttggtaaaaagtgtgcaaaaaagtgcgcggatgagtgtacctgttgtataaaatgtgcatgtatatattccgaaatatacacatgcatactttatgtacctgagtatatatctgtatctaaagagataatagatatatacctgtctgtgtatatatatttttataacccactccattagagaattatctctttattttgctcactctcccgctggcttgcctcttctctccttttctctctctcttaatttccctcactcgttttcttcttccctttgttgcctttttcacttccagatgctatcagtgatattcaaatgttcacatatcccgtgcatttgaatgtgcagcatggctaactacatttcttttgcactccctactccattgggttagccaaccactgttttcgtatctttctacaccgcttggagccctcaactctagaaattgctcttttagaggggataaaagtgatttttatatctatttccatatatgattctgtgagtgtgtatatctgtatacatatatatgtatatgtatatatatatataaatttacatttgccagtgatgcaaagtaggcatataagcagtagcaattgaaactgtcctttctcattagtaaatttactaaagctgctgttttaccgtgtcagaatttgaaacggtttctgtctgacaaatggtatttgggagcttcttgtaagaacacattttttgtgtgcgtttgtgagtttcacatgaaaatctttggaagcattttccgagcaagtatttaaaacattcagaactctagagttgagatctccaaaatggggaggtttttgggtttgggtttttttttgtttttttgtttggttttttttgctagtttacttgctgccgctcaccttaatgtgattttcatatatatttttatatatatgtgtgtgtgtatatacaaatatatatgtctgttttgaagtttagcttccttttcttttatatttattagagtaataataatgctttaatttaataattacagaccatgttggcaacatctttttgtttttagaaaggtaaccatgtttattttaaggactgacaacttgtttttgctatcttttagtgcaataagccgttctaaaggagagctgtgtccgtttagctgaacagaagcagcacctgtcccactggcagtgggagaacgggcacctctatggttttaagagaccaagtcaaaaaaaaaaaaaaaaaaagccttaatttcaaaaggaaagttttgtaatccacaaggggtctagaggatgttcctcttttaaatcaagatggcagcgaaaggtaatggaattgtctgagctgccctgctttgagctttaagattagaaatgaggcgatgcttcgggctaacagaggaccgtgagcatttctggtttcgaagacgctgaacttgtctgaagatgggaaactcttagggcggaattgggtttccaggtgcccgttttcatttagccgaaaggaatggtgacagcgtcttagcgaggcgatcgtttccaaagcgtattttgcttatttattgtgccactttccttttaaaattaaggtgtcggtaacttaaacccttcatttcactttacggaatgcataggaagtgagggctgggatattaaacaagttaaatcactgaaatgtgaaaataaaaagaaaagtaatgaaccttagtacattcattccactttaaaatgaacagagtactttagagctgtcagagcggagcatttattcagtaataacagggagtcaggggagccttgcactttgtaactcatgaaaactgcatttttgactgttttatttgcactggttcaaagtctgctgcagattgtcgatcatgggcattgctgttatcccagtccttatgaatcccacccgttctccacatgaaaaccgatgggtttagccgttttgtctctcttctcatttccacaaaatccactatatttgccaatttactgtattttgagcttaaaatctgagcccgttttgctccaacaggtgtaaaatcctttggccctcttttctgccggagaaccaagaaagtactgtatttgtgcatttgtatattgtaagaaatatatgtagtgctcttcacaacactgtgtcaaagcgcttcacggaacaggtggtgtatatacattatatacctatatatttttctcccattttcccagaaaaatatatacggcaaataaattggtttttattttctctt
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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