2024-03-29 18:33:39, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_028512141 5177 bp mRNA linear MAM 07-SEP-2020 DEFINITION PREDICTED: Phyllostomus discolor argonaute RISC catalytic component 3 (AGO3), transcript variant X5, mRNA. ACCESSION XM_028512141 VERSION XM_028512141.2 DBLINK BioProject: PRJNA524358 KEYWORDS RefSeq. SOURCE Phyllostomus discolor (pale spear-nosed bat) ORGANISM Phyllostomus discolor Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Microchiroptera; Phyllostomidae; Phyllostominae; Phyllostomus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_040907.2) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 7, 2020 this sequence version replaced XM_028512141.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Phyllostomus discolor Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.5 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5177 /organism="Phyllostomus discolor" /mol_type="mRNA" /isolate="MPI-MPIP mPhyDis1" /db_xref="taxon:89673" /chromosome="5" /sex="male" /tissue_type="muscle" /country="Germany: Munich, Collected from captive colony, LMU" /collection_date="25-Oct-2016" /collected_by="Pedro Rodenas-Cuadrado, Uwe Firzlaff, Sonja Vernes" gene 1..5177 /gene="AGO3" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 15 samples with support for all annotated introns" /db_xref="GeneID:114496570" CDS 138..2018 /gene="AGO3" /codon_start=1 /product="protein argonaute-3 isoform X3" /protein_id="XP_028367942.1" /db_xref="GeneID:114496570" /translation="
MCEVLDIHNIDEQPRPLTDSHRVKFTKEIKGLKVEVTHCGTMRRKYRVCNVTRRPANHQTFPLQLENGQTVERTVAQYFREKYTLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQDEISRLVRSANYETDPFVQEFQFKVRDEMAHVTGRVLPAPMLQYGGRNRTVATPSHGVWDMRGKQFHTGVEIKMWAIACFATQRQCREEILKGFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVIKTSPQTLSNLCLKINVKLGGINNILVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPSRYCATVRVQRPRQEIIQDLASMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFRQVLYYELLAIREACISLEKDYQPGITYIVVQKRHHTRLFCADRTERVGRSGNIPAGTTVDTDITHPYEFDFYLCSHAGIQGTSRPSHYHVLWDDNCFTADELQLLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHVSGQSNGRDPQALAKAVQIHQDTLRTMYFA"
misc_feature 138..479 /gene="AGO3" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(273..275,318..320,360..362,372..374,426..428, 447..449,453..455) /gene="AGO3" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 612..1889 /gene="AGO3" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1023..1025,1035..1037,1071..1082,1089..1091, 1113..1115,1122..1124,1134..1136,1146..1148) /gene="AGO3" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(1227..1229,1233..1235,1443..1445,1857..1859) /gene="AGO3" /note="active site" /db_xref="CDD:240015" ORIGIN
aaagagacctctggcagcagtgtggagaatagatagaggagaaaaaactaatctgagaagccagttaggaggctttttcaatcactagttcagtttctgccactgccttctacaaagcacaacctgtaattcagttcatgtgtgaagttcttgacattcataatattgatgagcaaccaagacctctgactgattctcatcgggtaaaattcaccaaagagataaaaggtctgaaggttgaagtgactcattgtggaacaatgagacggaaataccgggtttgtaatgtaacaagaaggcctgccaatcatcaaaccttccctttacagttagaaaatggccaaactgtggagagaacagtagcacagtatttcagagaaaagtatactcttcagctgaagtacccacaccttccctgtctgcaagtggggcaggagcagaaacacacatatctgccactagaagtttgtaatattgtggcagggcagcgatgcatcaagaagctaacagacaatcagacttccactatgatcaaagcaacagcaagatctgcaccagatagacaagacgaaattagcagattggtaagaagtgcaaattatgaaacagatccatttgttcaggagtttcaatttaaagttcgagatgaaatggcccatgtgaccggacgcgtacttccagctcctatgctccagtacggaggacggaatcggacagtagcaacaccaagccatggagtatgggacatgcgagggaaacagttccacacaggggttgaaatcaaaatgtgggctatagcttgttttgccacacagaggcagtgcagggaagaaatattgaagggtttcacagaccagctgcggaagatttccaaggatgcggggatgcccatccagggccagccttgcttctgcaaatacgcgcagggggcagacagcgtggagcccatgttccggcatctcaagaacacctactcagggctgcagctcattatcgtcatcctgccagggaagacgccagtgtatgcggaggtgaaacgtgtaggagatacacttttgggtatggctacacagtgtgttcaagtaaagaatgtaataaaaacatcccctcaaactctgtcaaacctgtgcctaaagataaatgttaaactcggagggatcaataatattcttgtacctcatcaaagaccttctgtgttccagcaaccagtgatatttttgggagcagatgtcactcatccaccagctggtgatgggaagaagccttctattgctgctgttgtagggagtatggatgcccacccaagcagatactgtgctacagtaagagttcagagaccccgacaggagatcatccaggacttggcctccatggtccgagaacttctcattcaattttataagtcaacgcggttcaaacctactcgaatcatcttctatcgggatggtgtttcagagggacagtttaggcaggtattatattatgaactactagcaattcgagaagcctgcatcagtttggaaaaagactatcaacctggaataacctacattgtagttcagaagagacatcacactcggttattttgtgctgataggacagaaagggttggaagaagtggcaatatcccagctggaacaacggttgacacagacattacacacccatatgagtttgatttttacctctgtagccacgcaggaatacagggtaccagccgtccttcacactatcatgttttatgggatgataactgctttactgcagatgaacttcagctgctaacttaccagctctgccacacttacgtgcgctgtacacgttctgtttctatacctgcaccagcgtattatgctcacctggtggcattcagagccagatatcatctcgtagacaaggaacatgacagtgctgaaggaagtcacgtttcaggacagagcaatggacgcgatccacaagctcttgccaaggctgtacagattcaccaagataccttacgcacaatgtactttgcttaaaaaatccgagagtattctctgaaaggaagaactgaaagatgaattgacatacaacgtatgtttccatggaatctgttgagtggggatgcctccagccatacagaaaccaacactgtggggaccagggtctgatttttatgttgatacaaggaagattgtttacttcatcaaggaacacagcaccattatgcaatatgaaaccagccaactgcttttctgtgcggtctcctgtaggaagtatcgccattgttttgttttcactttctatagtctaacccttttaatgcctttacctcaagttgcttggcagcacaactatctttgcaaaaaaagtaaagaaaaggtaaatgataatttaaaaaaaacacacctgtatgaataatcagtgattgttcataattatgtgtgtgaaaaaattaatgtgcattcatgtattcttgtaaaaagtatctgtgtatactttaagtgtatacatgtatacttcatatacatatatatctggatctaccttgataatagatatatatgttctttgtatatattttataattcattccattgggaaatttctttcccttttattgtctgctcaccaccacttttatttctcactctacctcccctgcctcatcacctacgttttttttccttaatgctaccagtgacattcaaatgtctgtgtatctgattcatttgaatatgaagcatcacaaagtagacttttattttgcacacccactcctctctcgtctcatacacaatattaagtcctcaactcttgatattactttcttgagaagcagttattttatgtgtgtgtgtgtgtgtgtgtgtgtgtatgtttttgtgagagtctgcgtctgccacctcctgctctgaatttacatttgccacttgtgcaaggtgtgcataagcagtagcaacctattcttttttttttagtgagtttgttaaagctgctataaatataaaatcttgtcagaactataactctctctctgtaagtgatatgtattctaaagccttctgtttctgtgggttatacatggaaatcccttaaaggatttttttaaagggtaaatattttaaatgattagaactctgtagggttgagacctctgaaattggagtgagagaaagaaggagttgttcgagttaaattttttttttgctagtttacttgctgcctctcataccttaatgtgattttcatatatatatttttatatatatgcgtgtgtatatataaatatatatgtatgtattttgaagtatagcttccttttcttttatatttattagagtagtgctttaatgattatagaactgtattggcaacatgttttatagaaatataatcatgtttattttaagaactgaccacctgtttttgctattttttcgtgcaataagccgttagaaaggaaagctgtgtctgtctgacactctgccccagacagtgttggagcaggcacctccgcagttttgaaagagcagagtgatacagccttaatttcagaaggaaagtttttctttattttcaaatctaaagcaagtctgaccttgaatattaaaaataaagttgaactttgacctaaatgatcatgaatagattaaaatttagaagatatttaaattctttgaaaatgaatcatgtttatggaagaatcatactggttaggggcccattttcatttattaagatgagtcaggaaaatgtaatattttaaaaaatatttttgccaatttactaccagtgtaactttccttttaaaattagggttatggtgacaaaggaagttaggacttcagttattttaaatgagttaataactgaaatgtgggggaaagtattgcaaaatttgtttgatggatttcactttaagatattaaaaagtactataaagctgtcaaaaccaagttcaccagtaacattggattcaggggaactttgcactttgtaactcacgaaaattgcattttactcttcttttgcactggttcagagtataactattacagattgtttccagggggcattgtcgttaacctttccaaatgtcatctgttcatgaaaatgaatgggttagtttagctctgtagtttctctctcacctgtaacccactcttaactgccagttactgtattttgagcctaaaatctgagcccatgtcctccaacagttatgaaatcttttgtccctctctcagaaaactaagaaagtactgtattttgtatgtttattatattggagtgtctgaaatgcaatttacaacactgtttcaaagctctttacatgaggtaatatttgtatagtacagtatatacattttttctctcaaccctacccccttctcctccaaaaaatcctataaagcatgtattttttttttacattgaaaattcactgaatatagtagtcagcaacatgagcaagggaagaaaattgtgtgttctaggtggtaaaaactttgtttgctgtgtgcttgctcagtgtgagtaaaacatctccctttatcagagagagttacgcagattcatgtgggaaactttagggcccagtgaagaactgtagatacccctttgctatttactgctttacctaattttttttttttttttttcagttatttcgtgtcacatgcactagagtgcagcccataatttaaatgtatttgggaggacttttacaaaggaaaacaaatattttttaaatacaaagctttacctttgaagtgagttcttttttacggtttcttacagtttcaaacattattagtttagtttaaagttggttaacttgaaagagtatgtagagtatatttctattttgcttactaacaaattagtgtgtcacacttacatagaagaaacattgtacttagaattttaagataaaagagtaagaggcaagtactttttgaattttgttttaattattattgcacttctggtgtagaattcctgaccatttttattttttaaaaagatcgttctgaatgtaatggccatgaaactcaatagcgacttttctgttctgccctcactcactaactatataatcaatgctaagttttggtctgctgttgtctgtgatgtacagtatcagagtgactttaaaatgtcagttctagcaactggtataattgatgttcatg
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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