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2021-01-24 05:44:23, GGRNA.v2 : RefSeq release 203 (Nov, 2020)

LOCUS       XM_028512140            5848 bp    mRNA    linear   MAM 07-SEP-2020
DEFINITION  PREDICTED: Phyllostomus discolor argonaute RISC catalytic component
            3 (AGO3), transcript variant X4, mRNA.
ACCESSION   XM_028512140
VERSION     XM_028512140.2
DBLINK      BioProject: PRJNA524358
KEYWORDS    RefSeq.
SOURCE      Phyllostomus discolor (pale spear-nosed bat)
  ORGANISM  Phyllostomus discolor
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Chiroptera; Microchiroptera;
            Phyllostomidae; Phyllostominae; Phyllostomus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_040907.2) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 7, 2020 this sequence version replaced XM_028512140.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phyllostomus discolor Annotation
                                           Release 101
            Annotation Version          :: 101
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.5
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5848
                     /organism="Phyllostomus discolor"
                     /mol_type="mRNA"
                     /isolate="MPI-MPIP mPhyDis1"
                     /db_xref="taxon:89673"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="muscle"
                     /country="Germany: Munich, Collected from captive colony,
                     LMU"
                     /collection_date="25-Oct-2016"
                     /collected_by="Pedro Rodenas-Cuadrado, Uwe Firzlaff, Sonja
                     Vernes"
     gene            1..5848
                     /gene="AGO3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 43 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:114496570"
     CDS             809..2689
                     /gene="AGO3"
                     /codon_start=1
                     /product="protein argonaute-3 isoform X3"
                     /protein_id="XP_028367941.1"
                     /db_xref="GeneID:114496570"
                     /translation="
MCEVLDIHNIDEQPRPLTDSHRVKFTKEIKGLKVEVTHCGTMRRKYRVCNVTRRPANHQTFPLQLENGQTVERTVAQYFREKYTLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQDEISRLVRSANYETDPFVQEFQFKVRDEMAHVTGRVLPAPMLQYGGRNRTVATPSHGVWDMRGKQFHTGVEIKMWAIACFATQRQCREEILKGFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVIKTSPQTLSNLCLKINVKLGGINNILVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPSRYCATVRVQRPRQEIIQDLASMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFRQVLYYELLAIREACISLEKDYQPGITYIVVQKRHHTRLFCADRTERVGRSGNIPAGTTVDTDITHPYEFDFYLCSHAGIQGTSRPSHYHVLWDDNCFTADELQLLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHVSGQSNGRDPQALAKAVQIHQDTLRTMYFA"
     misc_feature    809..1150
                     /gene="AGO3"
                     /note="PAZ domain, argonaute_like subfamily. Argonaute is
                     part of the RNA-induced silencing complex (RISC), and is
                     an endonuclease that plays a key role in the RNA
                     interference pathway. The PAZ domain has been named after
                     the proteins Piwi,Argonaut, and Zwille; Region:
                     PAZ_argonaute_like; cd02846"
                     /db_xref="CDD:239212"
     misc_feature    order(944..946,989..991,1031..1033,1043..1045,1097..1099,
                     1118..1120,1124..1126)
                     /gene="AGO3"
                     /note="nucleic acid-binding interface [nucleotide
                     binding]; other site"
                     /db_xref="CDD:239212"
     misc_feature    1283..2560
                     /gene="AGO3"
                     /note="PIWI domain, Argonaute-like subfamily. Argonaute is
                     the central component of the RNA-induced silencing complex
                     (RISC) and related complexes. The PIWI domain is the
                     C-terminal portion of Argonaute and consists of two
                     subdomains, one of which provides the...; Region:
                     Piwi_ago-like; cd04657"
                     /db_xref="CDD:240015"
     misc_feature    order(1694..1696,1706..1708,1742..1753,1760..1762,
                     1784..1786,1793..1795,1805..1807,1817..1819)
                     /gene="AGO3"
                     /note="5' RNA guide strand anchoring site; other site"
                     /db_xref="CDD:240015"
     misc_feature    order(1898..1900,1904..1906,2114..2116,2528..2530)
                     /gene="AGO3"
                     /note="active site"
                     /db_xref="CDD:240015"
ORIGIN      
gcaaaattctgtgattattcagtctttgaaacagccttcatgttcccaaatctcaagctcagtaactgtgctgtgttataaactagcttctaagaaggacatagtcgccaacatgcattcagagaagtgattcattcatacccagtatgaatggttatgctgtcagctgaatatgggaggtagatctgctgttgctggttagttggcagtgtatataccatgtataaaaatagaccaaatgttaataaatctaaagcttgaggattctttgagacatctgggtagagaaatttaatatgtagttagaaatgcaggtatgaaaatctgtagtggcaggagctaaaaataaaattttgggactcctccatatataaatctatacttggactatagaaatggaaaaacttctttagagcagtatttagattgaaagcacaaatgaaaaggacaatgccatggggaatactagcatttaaggaaggacaaaggaccagtgagcagttgatgattattgcagttagtctgagagccaaaaacaccatgtcgagggagccaagggaggaaacattcaaagagtagatgatatcacagttacgcagtgggagcttttccaacaaaatcaaaagtaagacaaggatgtcagtgctatgatatttagtcactattgtgtttgctaacttctgttcttcttacaggtttcagtctacatgttacttccttgagaagcagtttttgacacccttcaccccccaagtctgagttagtttctgccactgccttctacaaagcacaacctgtaattcagttcatgtgtgaagttcttgacattcataatattgatgagcaaccaagacctctgactgattctcatcgggtaaaattcaccaaagagataaaaggtctgaaggttgaagtgactcattgtggaacaatgagacggaaataccgggtttgtaatgtaacaagaaggcctgccaatcatcaaaccttccctttacagttagaaaatggccaaactgtggagagaacagtagcacagtatttcagagaaaagtatactcttcagctgaagtacccacaccttccctgtctgcaagtggggcaggagcagaaacacacatatctgccactagaagtttgtaatattgtggcagggcagcgatgcatcaagaagctaacagacaatcagacttccactatgatcaaagcaacagcaagatctgcaccagatagacaagacgaaattagcagattggtaagaagtgcaaattatgaaacagatccatttgttcaggagtttcaatttaaagttcgagatgaaatggcccatgtgaccggacgcgtacttccagctcctatgctccagtacggaggacggaatcggacagtagcaacaccaagccatggagtatgggacatgcgagggaaacagttccacacaggggttgaaatcaaaatgtgggctatagcttgttttgccacacagaggcagtgcagggaagaaatattgaagggtttcacagaccagctgcggaagatttccaaggatgcggggatgcccatccagggccagccttgcttctgcaaatacgcgcagggggcagacagcgtggagcccatgttccggcatctcaagaacacctactcagggctgcagctcattatcgtcatcctgccagggaagacgccagtgtatgcggaggtgaaacgtgtaggagatacacttttgggtatggctacacagtgtgttcaagtaaagaatgtaataaaaacatcccctcaaactctgtcaaacctgtgcctaaagataaatgttaaactcggagggatcaataatattcttgtacctcatcaaagaccttctgtgttccagcaaccagtgatatttttgggagcagatgtcactcatccaccagctggtgatgggaagaagccttctattgctgctgttgtagggagtatggatgcccacccaagcagatactgtgctacagtaagagttcagagaccccgacaggagatcatccaggacttggcctccatggtccgagaacttctcattcaattttataagtcaacgcggttcaaacctactcgaatcatcttctatcgggatggtgtttcagagggacagtttaggcaggtattatattatgaactactagcaattcgagaagcctgcatcagtttggaaaaagactatcaacctggaataacctacattgtagttcagaagagacatcacactcggttattttgtgctgataggacagaaagggttggaagaagtggcaatatcccagctggaacaacggttgacacagacattacacacccatatgagtttgatttttacctctgtagccacgcaggaatacagggtaccagccgtccttcacactatcatgttttatgggatgataactgctttactgcagatgaacttcagctgctaacttaccagctctgccacacttacgtgcgctgtacacgttctgtttctatacctgcaccagcgtattatgctcacctggtggcattcagagccagatatcatctcgtagacaaggaacatgacagtgctgaaggaagtcacgtttcaggacagagcaatggacgcgatccacaagctcttgccaaggctgtacagattcaccaagataccttacgcacaatgtactttgcttaaaaaatccgagagtattctctgaaaggaagaactgaaagatgaattgacatacaacgtatgtttccatggaatctgttgagtggggatgcctccagccatacagaaaccaacactgtggggaccagggtctgatttttatgttgatacaaggaagattgtttacttcatcaaggaacacagcaccattatgcaatatgaaaccagccaactgcttttctgtgcggtctcctgtaggaagtatcgccattgttttgttttcactttctatagtctaacccttttaatgcctttacctcaagttgcttggcagcacaactatctttgcaaaaaaagtaaagaaaaggtaaatgataatttaaaaaaaacacacctgtatgaataatcagtgattgttcataattatgtgtgtgaaaaaattaatgtgcattcatgtattcttgtaaaaagtatctgtgtatactttaagtgtatacatgtatacttcatatacatatatatctggatctaccttgataatagatatatatgttctttgtatatattttataattcattccattgggaaatttctttcccttttattgtctgctcaccaccacttttatttctcactctacctcccctgcctcatcacctacgttttttttccttaatgctaccagtgacattcaaatgtctgtgtatctgattcatttgaatatgaagcatcacaaagtagacttttattttgcacacccactcctctctcgtctcatacacaatattaagtcctcaactcttgatattactttcttgagaagcagttattttatgtgtgtgtgtgtgtgtgtgtgtgtgtatgtttttgtgagagtctgcgtctgccacctcctgctctgaatttacatttgccacttgtgcaaggtgtgcataagcagtagcaacctattcttttttttttagtgagtttgttaaagctgctataaatataaaatcttgtcagaactataactctctctctgtaagtgatatgtattctaaagccttctgtttctgtgggttatacatggaaatcccttaaaggatttttttaaagggtaaatattttaaatgattagaactctgtagggttgagacctctgaaattggagtgagagaaagaaggagttgttcgagttaaattttttttttgctagtttacttgctgcctctcataccttaatgtgattttcatatatatatttttatatatatgcgtgtgtatatataaatatatatgtatgtattttgaagtatagcttccttttcttttatatttattagagtagtgctttaatgattatagaactgtattggcaacatgttttatagaaatataatcatgtttattttaagaactgaccacctgtttttgctattttttcgtgcaataagccgttagaaaggaaagctgtgtctgtctgacactctgccccagacagtgttggagcaggcacctccgcagttttgaaagagcagagtgatacagccttaatttcagaaggaaagtttttctttattttcaaatctaaagcaagtctgaccttgaatattaaaaataaagttgaactttgacctaaatgatcatgaatagattaaaatttagaagatatttaaattctttgaaaatgaatcatgtttatggaagaatcatactggttaggggcccattttcatttattaagatgagtcaggaaaatgtaatattttaaaaaatatttttgccaatttactaccagtgtaactttccttttaaaattagggttatggtgacaaaggaagttaggacttcagttattttaaatgagttaataactgaaatgtgggggaaagtattgcaaaatttgtttgatggatttcactttaagatattaaaaagtactataaagctgtcaaaaccaagttcaccagtaacattggattcaggggaactttgcactttgtaactcacgaaaattgcattttactcttcttttgcactggttcagagtataactattacagattgtttccagggggcattgtcgttaacctttccaaatgtcatctgttcatgaaaatgaatgggttagtttagctctgtagtttctctctcacctgtaacccactcttaactgccagttactgtattttgagcctaaaatctgagcccatgtcctccaacagttatgaaatcttttgtccctctctcagaaaactaagaaagtactgtattttgtatgtttattatattggagtgtctgaaatgcaatttacaacactgtttcaaagctctttacatgaggtaatatttgtatagtacagtatatacattttttctctcaaccctacccccttctcctccaaaaaatcctataaagcatgtattttttttttacattgaaaattcactgaatatagtagtcagcaacatgagcaagggaagaaaattgtgtgttctaggtggtaaaaactttgtttgctgtgtgcttgctcagtgtgagtaaaacatctccctttatcagagagagttacgcagattcatgtgggaaactttagggcccagtgaagaactgtagatacccctttgctatttactgctttacctaattttttttttttttttttcagttatttcgtgtcacatgcactagagtgcagcccataatttaaatgtatttgggaggacttttacaaaggaaaacaaatattttttaaatacaaagctttacctttgaagtgagttcttttttacggtttcttacagtttcaaacattattagtttagtttaaagttggttaacttgaaagagtatgtagagtatatttctattttgcttactaacaaattagtgtgtcacacttacatagaagaaacattgtacttagaattttaagataaaagagtaagaggcaagtactttttgaattttgttttaattattattgcacttctggtgtagaattcctgaccatttttattttttaaaaagatcgttctgaatgtaatggccatgaaactcaatagcgacttttctgttctgccctcactcactaactatataatcaatgctaagttttggtctgctgttgtctgtgatgtacagtatcagagtgactttaaaatgtcagttctagcaactggtataattgatgttcatg
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]