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2021-01-24 05:34:28, GGRNA.v2 : RefSeq release 203 (Nov, 2020)

LOCUS       XM_027605965            8502 bp    mRNA    linear   MAM 06-AUG-2020
DEFINITION  PREDICTED: Zalophus californianus protein argonaute-3
            (LOC113929225), transcript variant X3, mRNA.
ACCESSION   XM_027605965
VERSION     XM_027605965.2
DBLINK      BioProject: PRJNA602522
KEYWORDS    RefSeq.
SOURCE      Zalophus californianus (California sea lion)
  ORGANISM  Zalophus californianus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia;
            Otariidae; Zalophus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045598.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Aug 6, 2020 this sequence version replaced XM_027605965.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Zalophus californianus Annotation
                                           Release 101
            Annotation Version          :: 101
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.5
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8502
                     /organism="Zalophus californianus"
                     /mol_type="mRNA"
                     /isolate="mZalCal1"
                     /db_xref="taxon:9704"
                     /chromosome="4"
                     /sex="male"
                     /tissue_type="blood"
                     /country="USA: California"
                     /lat_lon="37.858768 N 122.484010 W"
                     /collection_date="07-Jul-2018"
                     /collected_by="Frances Gulland and Jochen Wolf"
     gene            1..8502
                     /gene="LOC113929225"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 mRNAs, 5 ESTs, 4 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:113929225"
     CDS             98..1978
                     /gene="LOC113929225"
                     /codon_start=1
                     /product="protein argonaute-3 isoform X3"
                     /protein_id="XP_027461766.1"
                     /db_xref="GeneID:113929225"
                     /translation="
MCEVLDIHNIDEQPRPLTDSHRVKFTKEIKGLKVEVTHCGTMRRKYRVCNVTRRPASHQTFPLQLENGQTVERTVAQYFREKYTLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLVRSANYETDPFVQEFQFKVRDEMAHVTGRVLPAPMLQYGGRNRTVATPSHGVWDMRGKQFHTGVEIKMWAIACFATQRQCREEILKGFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVIKTSPQTLSNLCLKINVKLGGINNILVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPSRYCATVRVQRPRQEIIQDLASMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFRQVLYYELLAIREACISLEKDYQPGITYIVVQKRHHTRLFCADRTERVGRSGNIPAGTTVDTDITHPYEFDFYLCSHAGIQGTSRPSHYHVLWDDNCFTADELQLLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHVSGQSNGRDPQALAKAVQIHQDTLRTMYFA"
     misc_feature    98..439
                     /gene="LOC113929225"
                     /note="PAZ domain, argonaute_like subfamily. Argonaute is
                     part of the RNA-induced silencing complex (RISC), and is
                     an endonuclease that plays a key role in the RNA
                     interference pathway. The PAZ domain has been named after
                     the proteins Piwi,Argonaut, and Zwille; Region:
                     PAZ_argonaute_like; cd02846"
                     /db_xref="CDD:239212"
     misc_feature    order(233..235,278..280,320..322,332..334,386..388,
                     407..409,413..415)
                     /gene="LOC113929225"
                     /note="nucleic acid-binding interface [nucleotide
                     binding]; other site"
                     /db_xref="CDD:239212"
     misc_feature    572..1849
                     /gene="LOC113929225"
                     /note="PIWI domain, Argonaute-like subfamily. Argonaute is
                     the central component of the RNA-induced silencing complex
                     (RISC) and related complexes. The PIWI domain is the
                     C-terminal portion of Argonaute and consists of two
                     subdomains, one of which provides the...; Region:
                     Piwi_ago-like; cd04657"
                     /db_xref="CDD:240015"
     misc_feature    order(983..985,995..997,1031..1042,1049..1051,1073..1075,
                     1082..1084,1094..1096,1106..1108)
                     /gene="LOC113929225"
                     /note="5' RNA guide strand anchoring site; other site"
                     /db_xref="CDD:240015"
     misc_feature    order(1187..1189,1193..1195,1403..1405,1817..1819)
                     /gene="LOC113929225"
                     /note="active site"
                     /db_xref="CDD:240015"
ORIGIN      
gaaaaaactaatctcagaagccagttaggaggctttttcaatcactagttcagtttctgccactgccttctacaaagcacaacctgtaattcagttcatgtgtgaagttcttgacattcataatattgatgagcaaccaagacctctgactgattctcatcgagtaaaattcaccaaagagataaaaggtctgaaggttgaagtgactcattgtggaacaatgagacggaaataccgtgtttgtaatgtaacaagaaggcctgccagtcatcaaacctttcctttacagttagaaaatggccaaactgtggagagaacagtagcacagtattttagagaaaagtatactcttcagctgaagtacccacatcttccttgtctgcaagtggggcaggaacagaaacatacctacctgccactagaagtctgtaatattgtggcagggcaacgatgtatcaagaagctaacggacaatcagacttccactatgatcaaagcaacagcaagatctgcgccagatagacaagaggaaattagcagattggtaagaagtgcaaattatgaaacagatccatttgttcaggagtttcaatttaaagttcgggatgaaatggcccacgtaaccggacgtgtacttccagcacctatgctgcagtatggaggacggaatcggacagtagcaacaccaagccatggagtatgggacatgcgggggaagcaatttcacacaggagttgagataaaaatgtgggctatagcttgttttgccacgcagaggcagtgcagagaagaaatactgaagggtttcacggaccagctacgtaagatttctaaagatgcagggatgcccatccagggccagccttgcttctgcaaatacgcgcagggggcagacagcgtggagcccatgttccggcatctcaagaacacctactctgggctacagctcattattgtcatcctgccaggaaagacaccagtgtatgcggaagtaaaacgcgtaggagatacacttttgggtatggccacacagtgtgtccaagtcaagaatgtaataaaaacatcccctcaaactctctcaaacctgtgcctaaagataaatgttaaactcggagggatcaataatattcttgtacctcatcaaagaccttctgtgttccagcaaccagtgatctttttgggagcagacgtcactcatccaccagctggtgatgggaagaagccttcgattgctgctgttgtaggtagtatggatgcccacccaagcagatactgtgccacagtaagggttcagagaccccgacaggagatcatccaggacttggcctccatggttcgagaacttctcattcagttttataaatcaactcggttcaaacctactcgtatcatcttttatcgggatggtgtttcagaaggacagtttaggcaggtattatattatgaactactagcaattcgagaagcctgcatcagtttggagaaagactatcaacctggaataacctacattgtagttcagaagagacatcacactcgattattttgtgctgacaggacagaaagggttggaagaagtggcaatatcccagctggaacaacagttgatacagatattacacacccgtatgagtttgatttttacctctgtagccatgctggaatacagggtaccagccgtccttcacactatcatgttttatgggatgataactgctttactgcagatgaacttcagctgctaacttaccagctctgccacacttatgtgcgctgtacacgatctgtttctatacctgcaccagcgtattatgctcacctagtggcattcagagccagatatcatctcgtggacaaagaacatgacagtgctgaaggaagtcacgtttcaggacagagcaacggacgagatccacaagctcttgccaaggctgtacagattcaccaagataccttacgcacaatgtactttgcttaaaaagtccaagaatattctctgagaggaagaactgaaagatgcatcgacatacagcatatgtttccagtggagtcagttgagtggggatgcctccagccatacagcaaccaacactgtgtggggaccagggtctgatttttatgttgatacaaggaagattgtttacttcatcaaggaacacagcaccattatgcaatatgaaaccagccaactgcttttttgtgcggtctccttaggaagtatcgccattgttttgttttcactttcttgtagtctaacccttttaatgcctttacctcaagttgcttggcagcacaactatctttgcaaaaaaaagtaaagaaaaagtaaatgacagtttaaaaaaaacacacacctatatgaataatcaaagtgattgttcacaattatgtgtgcaaaaaaattaatgtgcattcgtgtattcttgtaaaaggtatctgtgtatattttaaatatatacatgtatacttcatatgcatatatatctggatctacattgataatagatatatatgtgtttgtgcgtgtattttataggtcattcctttggggaactttctttcccttttattatcttaccaacaccactttgatttttctctctacctccctttccttcatctcctacatttttttttcctaatgctaccagtgacattcagatgttcatgtatctggttcatttggatatgaagcatggcaaactagatttttacttttattttgcacaccctactccggtctcttgtctcatacacaattccaagtcctcaactcttgatactgctttcttaagaaacaaaattaatatatatatatatatgtaattatatatatatatataatgtttctgtgagagtgtgtgtctgccccctcctgctctgaatttacatttgccatttgtacaatgtgtacataagcagtagcagccttaaactattatttttctttagtttgttaaagctgctatgaatataaaaccttgtcaaaagttgtaactcagaaattcctctctataagtgatatgtattctaaatttagccttctgtttctatgcgttatacattaaaatcccttgtagcttttataaagggcaaatattctaaacaattggaattctttagggttgaggcctctgaaattgggtggagagagagagaaggggttgttgagggtttttttattatttttttttttttgctagtttacttgctgcctctcataccttaatgtgattttcatatatatatatttttatatatatgtgtatatataaacatatatgtgtgtgttttgaagtatagcttcttttcttttctatttattagaatagtgctttaatagagaactgtattggcaacatcttttatagaaatgtaatcatgtttattttaagaactgacaactttttttttttgctgtcttttagtgcaataagtagttttaaaggaaagctgtgtctgtttgatatctttaccacggacagtgggagaaacaggcacctccataattttaaaagggcaaagtaatacagccttaatttcagaaggaaagttttataatttttcaagtttaaagcctgtcttttaaaaatcataatgaaaatgaaggaagttaaatttcctaagtgagtctgaccttgaatattaaagatagagttgagctttgatttaagaaatgacagtgagtaggggcgcctggctggctcagtggctagagctcgcgactagatctcggggttgtgagttcaagccccacattggacgtggagcctacttaaaaaaaaaaaaagaaaagaaagaaaagaaaagcccgtgaatagcttaagatttggaagacatttacttctttgaaaatagatcacgtttattgaacaatcatactgggttaggtgcccattttcatttactcaaatgaatcaggaaaatataaaatgatatttttaaaacattttttgccagtttatcagcagtgtaactttccttttaaaattagggttatggtggcaaaggaattaggactttgatcattttaagttaaatcactgaaatgtggaaaaagttttacaaaacttctgttttattgatttcactttacgatattaaaaagtattatagagctgtcaaaattgagttcatcagtaacattggattcaggggagcgttgcactttgtgactcatgaaaattgcattttaattttcttttttttcttttttgcactggttcagagtgtagatactacggattgtttccagtgggcattgttaatcctttcagaattccatctgcacatgataacaaatggattagctctttagtttctctcttacctgtaatccactcttattgccaatttactgtattttgagcctaaaatctgagcccatgtcctccaacaggtatgaaatctttcgttcctctgccagaaaactaagaaagtactgtattttgtatgtttattattgaagtgtctgaaatgcaatttacaacactgtttcaaagctctttacatgaagtaatatttgtatagtatatatattttttctcccaaccctccccctctcctccaaaaatttcctataaagcatgtattttttttttaacattgaaatttcactgaatatagtcaggaacatgaatagaagaaaatagtataccctagatgctaaaaccttgattgctgtatgctttctcagtatgagtaaaacaccttcctttaccagtagaagttacacagacttaatgtgggaaactgtagggcccaggaaagaactgtagataccttttctctactgcttcacctaattttcagttatttagtttccatgtgctagaatgaagcccataatttaaatctatttaggactttactgaggaaaaacaattttttaaatataaagctttacctttaaaagtgagttcttttttagggtttctttcttacagtttcacattgctagtttaaggttggttaacttgaaaggatatgtatagtatattttgcttactaacaaattggtatatcaaacttaattaaaagaagccttgtgcttagaatttaaaagaccaggtggcaaatactttttgaaatttgttttaattattcacttctggtgtagaattcctgatctttttttattaaaaaaattttttttaagattgttttgaatttaaaggtcatgaaactcaacaatgacctttctgttcctgcctttgctcactaaactatataatgaatgctaaattttggtctgctgttttctatgatgcataagagtgactttaaaatatcagtcccagccactggtataattgattttcatgtgaagaagagttgggagtttaatgtatattctgtatggcaaatgtgtctgggtaaagtgctgatatatgttattacagtatcaagttattggcattgaggaccatacattcataatactgtagctgctatatttatttaattatgaagagtctgatagttactgcactaaaggttaaggagatgagcaggattggaggctagtgttagacaccccccctttttttttcctaaataagattaagaacatgaaataacaaggtaacaaagggtgctgccattttagtttcaatttaatattaggatactgttttagacatgtggatttttactttagtggtttcgcaaaagggtacctcaatctcctcagtactggtttttggcatattttcacagaagtacaaatgccctttattttttaatattttaccttttaacaagttactcagaaaaaaaaaagttcttctctggaaatatacctgttcgtaatctattaatttatttctcttcttagaagagtctagaagggattctagtaggaatgtaccgggtgttgtggaaggcacttgataaaaattcatctctaccttctagcatagggactcctagccttctaaagactcatactagttttccaaactaggttctctgatgacccaccactgcctaatgtttacttgtatattttgtaacggattttagtatgacggacagcatgataggcttagtcatgacagacttaaataaaatctgagttgccattcagtagaaatggctggcagaggatctcagtgtttaaggaaaaggtcaacactcagagtgccagtaatagatctgaagtaattagatggattataggccaggaattaaagaccgttgttaacggaatttggtgttttcagaggctaacatgaatttgcgaagggtggtgatttttatgaattccatcaagctagccacttggattcagctagaatattctgtagtcttgctatttcaaacttgatagaaatattttgccaaaaagcttaactgataactctgtataatttttatttggtatcattaaacctaagttaaatatttggttaaatcatctcttagatgttctcctactgagtattttttaaagacaggttgctcctattagtaacttgctacttaaattatcttttgtgagttatcagtcaagctgcaaaaagacatcattggcttggcatctttattttgctttttttatccatacaaagttttaacccttttcattcttcttgagaattcatggatgtcttaaagcttcaataataatagttgggagactttatatttatcaagtgaggcctccctgagtggcagtataaccctgactctagagtctgtctttattttcctatatccctcccatttgatcatataaagcactttcatgattctgtaggagtcaaataagccaagaatagatgtataaaatcagtacagaaatgtgaaagttttctccaaaaaatctttttaaaaaaaatttctgcttgtactaagaacattcttgatcagtgacagtgttagaaatgataccatgattgtgaaacctaagctgaccctcaggaggaaaaaattgaatctctctgtccccctctcactccctctctctttttatagatatctcaaagggaaaaaatattttttgaatttttcctactttaaaaatggtacgttttagtttataattttccatgtcggtcaaaataattttttttaactaatgtaaaatggtcaaggcttgtgctaatactatctactgctagctgaattttatttttctttacccagcaaagatagtactctagatttttacagtgttcattaaacctcaagaatctaatgttcttaaagtatggaaacttaaagattttaatttgaattaaaaatagataataaatttaatatggaaggttgagatttaccaataagaaaccctgttgaagtatcagctaacagagagtgtgacaaaattaagatcctgttaattgatctgtccagccattggtctcccttcctttttgaaatcaacgtctgaaacaaccaaaacctaatgtatctatgttagggtctcagtaaagcaaagatattcttcagggtagagctaaattaaatttttaaatcattttttaaagcaaggcggttcttagaaagtgccttttcagaagatggtgctgtagatttttatttttcaaatagcacgagactaaaaatttaaaagataaattattttagaactccaagagtgtgacagtttcataataatgttatttgttgtcctgaatctggtccaagggaaccaagtaaaggttttattcagtaaagcatctaggtaaatgctcaccaaatgtattttgtaagttcaaaaagtaaattttaaacaattaaccctttcagttctcagctgtgttgaaggtaatctgtaaggcacataaaacagcaaatctgctaaactttttaacaagagtataggtatggtagcaagtgcccaaaggggaaggtaacttgccaggaaattgtatgtcatagactacctttcttttttctttttcttttttaagcatagattgacccttctgtaaatatctattggcatccttttctaattaatatttattaaagaagactgcttatatataaaaggagagccaagtcatcatggaaattagtttaagagaacaagtaaagtgattttatctctatctttagggaaagattaagtgattctttttttctaccatgggggaaactatgaaaaatgatgacagtgcatctaaaaagggtatggtcagttaattagaaatgcaacatgcaaaattgggctttggaggaaataagcaatatgaagggtaatagcagaaccattcatacttattagaaatgtagcaatctaccagaaagcagttttcccctggactgtttactagtactagtaaacagcagtaaatgatcacctaaccagttcttgtgaatttggtgagcatttctccagaaaagaatagactaaaaacaaaaaacaccacacctcagtaaccttgtatgctgcattatgtaataaatgatagtaaaattatatcgattgtttggagtgtactgtgtctgcaaatatacgtgcacattaaactttttcattttttataatgt
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]