2024-04-29 12:50:44, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_027220006 1176 bp mRNA linear PLN 04-DEC-2018 DEFINITION PREDICTED: Coffea arabica transcriptional corepressor SEUSS-like (LOC113699640), mRNA. ACCESSION XM_027220006 VERSION XM_027220006.1 DBLINK BioProject: PRJNA506972 KEYWORDS RefSeq; includes ab initio. SOURCE Coffea arabica (coffee) ORGANISM Coffea arabica Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_039910.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Coffea arabica Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 100% of CDS bases ##RefSeq-Attributes-END## FEATURES Location/Qualifiers source 1..1176 /organism="Coffea arabica" /mol_type="mRNA" /cultivar="Caturra red" /isolate="CCC135-36" /db_xref="taxon:13443" /chromosome="7c" /sex="hermaphrodite" /tissue_type="leaves" /dev_stage="mature" /country="Colombia: Cenicafe Estacion Central Naranjal, Chinchina, Caldas" /lat_lon="4.970533 N 75.649180 W" /collection_date="Jul-2014" /collected_by="Alvaro L. Gaitan, Ph. D." gene 1..1176 /gene="LOC113699640" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins" /db_xref="GeneID:113699640" CDS 1..1176 /gene="LOC113699640" /codon_start=1 /product="transcriptional corepressor SEUSS-like" /protein_id="XP_027075807.1" /db_xref="GeneID:113699640" /translation="
MKQQEMGQHSGQPQEKSKSVHDSATGTTINKLVHQTASDQNASQQMSHPLGKTSSQMVEAQNHFQQVLYPTRNSTSVGQEQANAGCTSIFDLVEQEDDRLHKKQRYLPMSFQPSHTSVLKEQEVLTGKAPVKKDSGTLVSKPGMCALRLANYTRQMQLRPQDNNIEFWRSFVAEFFLPDVKKRLCVSSYGRKPDRVVDKVTGHCASHLSPVVLPFLPCFKLLEPPPYSLYLSDITTEILPRLFKVKYENGAIKEHYHLEMPIEHKYSSNQTVLQCEKVTHETVFEQLHVYHVGRLRVAFSPDLKICSWDFCVQHHDELIPRKELLPLVNELGLISKKYQDAKKNSALPAQEIEASSSEKFSNSVNQLTKALQPIVNELGYEKRYMRHLQIV"
misc_feature 442..1173 /gene="LOC113699640" /note="LIM-domain binding protein; Region: LIM_bind; pfam01803" /db_xref="CDD:426444" ORIGIN
atgaagcaacaggagatgggacaacattcaggccaaccacaagagaaatcaaagtcggttcatgattcagcaacgggaacaacgatcaacaaattggttcatcaaacagcatctgatcaaaatgcttcccaacagatgtcacatcccttgggaaaaaccagcagtcagatggttgaagctcagaatcatttccaacaagtattataccctaccagaaattcgacttctgttggacaggagcaagcaaatgcaggatgtacaagcatttttgacttagttgagcaagaagatgatcgactacacaagaagcagcgatacctcccaatgtcctttcagccatctcatacctcagttttgaaggagcaagaagttctaaccggcaaagcgcctgttaaaaaagattcaggaacgttagtctctaaaccagggatgtgtgctctacgattggcaaactacacaaggcagatgcagctaaggcctcaggacaacaacattgagttttggagaagctttgtagctgagttctttctccctgatgtcaagaagagattgtgtgtttcttcatatggcagaaaacctgatcgcgttgttgataaggttactggtcattgtgcttcacatttatctcccgttgtgcttccttttttgccttgcttcaaacttttagaaccacccccgtacagtctatatctttcagatattactactgaaatactaccaaggctgttcaaagtcaagtacgagaatggtgccataaaagagcattatcatctggagatgcctatcgagcacaaatattcaagcaatcaaactgtcctgcaatgcgaaaaagtaacacatgagactgtgtttgagcaactacatgtgtatcatgtaggccggcttagagttgcattttctccagacttaaagatttgctcatgggatttctgtgttcaacatcacgatgagcttataccaagaaaagaacttctccccctggtaaatgaacttggactgatatcaaagaaataccaagatgctaagaagaattcagcgttgcctgctcaagaaatagaagctagcagcagtgaaaagttctcaaactcagttaaccagttaacaaaggctttgcagcctattgtgaatgaactgggatatgaaaagcgatatatgcgacatcttcagatagtctag
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]