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2024-03-29 20:44:15, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_026782012            2665 bp    mRNA    linear   ROD 15-OCT-2018
DEFINITION  PREDICTED: Microtus ochrogaster protein argonaute-1 (LOC101993325),
            transcript variant X2, mRNA.
ACCESSION   XM_026782012
VERSION     XM_026782012.1
DBLINK      BioProject: PRJNA210839
KEYWORDS    RefSeq.
SOURCE      Microtus ochrogaster (prairie vole)
  ORGANISM  Microtus ochrogaster
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Cricetidae; Arvicolinae; Microtus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_022016.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Microtus ochrogaster Annotation
                                           Release 102
            Annotation Version          :: 102
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.1
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2665
                     /organism="Microtus ochrogaster"
                     /mol_type="mRNA"
                     /isolate="Prairie Vole_2"
                     /db_xref="taxon:79684"
                     /chromosome="10"
                     /sex="female"
     gene            1..2665
                     /gene="LOC101993325"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 9 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:101993325"
     CDS             170..2455
                     /gene="LOC101993325"
                     /codon_start=1
                     /product="protein argonaute-1 isoform X2"
                     /protein_id="XP_026637813.1"
                     /db_xref="GeneID:101993325"
                     /translation="
MEAGPSGAAAGAYLPPLQQVFQAPRRPGIGTVGKPIKLLANYFEVDIPKIDVYHYEVDIKPDKCPRRVNREVVEYMVQHFKPQIFGDRKPVYDGKKNIYTVTALPIGNERVDFEVTIPGEGKDRIFKVAIKWLAIVSWRMLHEALVSGQIPVPLESVQALDVAMRHLASMRYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWKMMLNIDVSATAFYKAQPVIEFMCEVLDIRNIDEQPKPLTDSQRVRFTKEIKGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLESGQTVECTVAQYFKQKYNLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLMKNASYNLDPYIQEFGIKVKDDMTEVTGRVLPAPILQYGGRNRAIATPNQGVWDMRGKQFYNGIEIKVWAIACFAPQKQCREEVLKNFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINVKLGGINNILVPHQRSAVFQQPVIFLGADVTHPPAGDGKKPSITAVVGSMDAHPSRYCATVRVQRPRQEIIEDLSYMVRELLIQFYKSTRFKPTRIIFYRDGVPEGQLPQILHYELLAIRDACIKLEKDYQPGITYIVVQKRHHTRLFCADKNERLPGLDPIYRPAPREGKGNCHLLNFSYVPDTVQGIFLTATL"
     misc_feature    245..2338
                     /gene="LOC101993325"
                     /note="protein argonaute; Provisional; Region: PLN03202"
                     /db_xref="CDD:215631"
     misc_feature    1337..>2332
                     /gene="LOC101993325"
                     /note="PIWI domain, Argonaute-like subfamily. Argonaute is
                     the central component of the RNA-induced silencing complex
                     (RISC) and related complexes. The PIWI domain is the
                     C-terminal portion of Argonaute and consists of two
                     subdomains, one of which provides the...; Region:
                     Piwi_ago-like; cd04657"
                     /db_xref="CDD:240015"
     misc_feature    order(1748..1750,1760..1762,1796..1807,1814..1816,
                     1838..1840,1847..1849,1859..1861,1871..1873)
                     /gene="LOC101993325"
                     /note="5' RNA guide strand anchoring site [active]"
                     /db_xref="CDD:240015"
ORIGIN      
ccgcggcggaggcaacggaggctgcgggggcgacggcgcgagcggccgggcttcgggggggagccgagcccggcccgggagcccgagcagtgcaagtgtgaggcacctaggcccatcacgctggactcctcagtctcccggccgcctgtcctccacacgggtatatgggatggaagcgggaccctcgggagcagctgcaggtgcctacctgccgcccctgcagcaggtgttccaggcacctcgccggcctggcattggcacagtgggcaaaccaatcaagcttctggccaactactttgaggtggacattcctaagattgacgtttaccattacgaggtggacatcaagccggataagtgtccccgcagagtcaaccgggaagtggtggagtacatggtccagcatttcaagcctcagatcttcggggaccgcaagcctgtgtatgatggaaagaagaacatttacactgtcacagcgctgcccattggcaacgagagggttgactttgaggtgacaatccctggggaagggaaagatagaatttttaaggttgccatcaagtggctggccattgtgagctggcgtatgctgcatgaagccctggtcagtggccagatccctgtgcccttggagtctgtgcaagccctggatgtggccatgaggcacctggcatctatgaggtacacccctgtgggccgctccttcttctcaccgcctgagggctactaccacccgctggggggtgggcgcgaggtctggttcggctttcaccagtctgtgcgccctgccatgtggaagatgatgctcaacattgatgtctcagccactgccttctacaaagcacagccagtgattgagttcatgtgtgaggtcctggacatcaggaacatagatgaacaacccaagcccctcacggattcccagcgtgtccgctttaccaaggagataaaaggcctgaaggtggaagtgacccactgtggacagatgaagaggaaatatcgcgtgtgtaatgttacccgccgccctgctagtcatcagacgtttcccttgcagctggagagtgggcagactgtggaatgcaccgtggcacagtatttcaagcagaaatacaaccttcagctcaagtatccccacctgccctgcctgcaagttgggcaagaacagaagcatacctatttgcccctcgaggtctgtaatattgtggctgggcagcggtgcattaagaagttgactgacaaccagacttcaaccatgataaaggctacagctaggtcggccccagacagacaggaggagatcagtcgcctgatgaagaatgccagctacaacttagatccctacatccaggagtttgggatcaaagtgaaggacgacatgacggaggtgacggggcgagtgctgccggcgcccatcctgcagtatggcggccggaaccgggccattgctacacccaaccaaggtgtctgggacatgcgtgggaaacagttctacaatgggattgagatcaaagtctgggccatcgcctgcttcgcaccccaaaaacaatgtcgagaagaggtgctcaagaacttcacggaccagctgcggaagatttccaaggatgcggggatgcccatccagggtcagccttgcttctgcaaatacgcgcagggagcagacagcgtggagcccatgttccggcatctcaagaacacctactcaggactgcagctcattattgtcatcctgcccgggaagacgccagtgtatgctgaagtgaagcgtgttggagatacactcttgggaatggcaacacagtgtgtgcaggtgaagaatgtagtcaagacctcacctcagaccctgtccaacctctgcctcaagatcaatgtcaaacttggtggcattaacaacatcctagtcccacaccagcgctctgctgtttttcaacaaccagtgattttcctgggagcagacgttacacaccccccggctggggacgggaagaagccttccatcacagcagtggtaggcagcatggatgcacaccccagccgatactgtgctactgtgcgtgtgcagcgcccacggcaggagatcattgaagacttgtcctatatggtgcgggagctgcttatccagttctacaagtccacccgtttcaagcccacccgaatcatcttctacagagatggggtccctgagggccagctcccccagattcttcactatgagctgcttgccattcgagatgcctgcatcaaactggaaaaagactaccagcctgggatcacttatattgtggtgcagaaacgccatcacacccgccttttttgtgctgacaagaatgagcgactccctggcctagaccctatatatagaccagctcccagagaagggaaagggaactgccatttattgaacttctcctatgtgccagacactgttcaaggaatcttcctcacagcaactctgtgaggtaggtactattaatatctccgtttaacctcagaaaggttaaatgacttgctaagatcacaaagctagtaaagagcaaaaccaggattcaaacacttgacttagaagcctagtatttcaagacctagttccctgtgagaatagaaacttctttgttcttggaattctgggagactgagagtagaatccagctaaggccctagtcaggtc
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]