2024-04-26 07:35:06, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_026716020 2973 bp mRNA linear VRT 11-OCT-2018 DEFINITION PREDICTED: Pseudonaja textilis argonaute 2, RISC catalytic component (AGO2), mRNA. ACCESSION XM_026716020 VERSION XM_026716020.1 DBLINK BioProject: PRJNA495355 KEYWORDS RefSeq. SOURCE Pseudonaja textilis ORGANISM Pseudonaja textilis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Serpentes; Colubroidea; Elapidae; Acanthophiinae; Pseudonaja. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_020769389.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Pseudonaja textilis Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2973 /organism="Pseudonaja textilis" /mol_type="mRNA" /db_xref="taxon:8673" /chromosome="Unknown" gene 1..2973 /gene="AGO2" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments" /db_xref="GeneID:113446388" CDS 61..2670 /gene="AGO2" /codon_start=1 /product="protein argonaute-2" /protein_id="XP_026571805.1" /db_xref="GeneID:113446388" /translation="
MYPAGGAAPGAAAGPVLTTSPTLPPPMQAYAFKPPPRPDFGTSGRTIKLQANFFEMDIPKMDIYHYELDIKPEKCPRRVNREIVEHMVQHFKAQIFGDRKPVFDGRKNLYTAMPLPIGRDKQVELEVTLPGEGKDRIFKVAIKWMSVVSLQALHDALSGRLPSVPFETIQALDVVMRHLPSMRYTPVGRSFFTASEGCSNPLGGGREVWFGFHQSVRPSLWKMMLNIDVSATAFYKAQPVIEFVCEVLDFKSIEEQQKPLTDSQRVKFTKEIKGLKVEITHCGQMKRKYRVCNVTRRPASHQTFPLQQESGQTVECTVAQYFKDRHKLVLRYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIRATARSAPDRQEEISKLMRSASFNTDPFVREFGIMVKDEMTDVTGRVLQPPSILYGGRNKAIATPVQGVWDMRNKQFHTGIEIKVWAIACFAPQRQCTEVHLKTFTEQLRKISRDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLVVVILPGKTPVYAEVKRVGDTVLGMATQCVQMKNVQRTTPQTLSNLCLKINVKLGGVNNILLPQGRPPVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPNRYCATVRVQQHRQEIIQDLAAMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFQQVLHHELLAIREACIKLEKDYQPGITFIVVQKRHHTRLFCTDKNERVGKSGNIPAGTTVDTKITHPSEFDFYLCSHAGIQGTSRPSHYHVLWDDNRFSSDELQILTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHTSGQSNGRDHQALAKAVQVHQDTLRTMYFA"
misc_feature 328..588 /gene="AGO2" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 616..768 /gene="AGO2" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 769..1131 /gene="AGO2" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(925..927,970..972,1012..1014,1024..1026,1078..1080, 1099..1101,1105..1107) /gene="AGO2" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1264..2541 /gene="AGO2" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1675..1677,1687..1689,1723..1734,1741..1743, 1765..1767,1774..1776,1786..1788,1798..1800) /gene="AGO2" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(1879..1881,1885..1887,2095..2097,2509..2511) /gene="AGO2" /note="active site" /db_xref="CDD:240015" ORIGIN
gcggccgccgcctggactcccgcgccgctcgcctcccacgcagcccggcgctcggccgccatgtacccggccgggggagccgcccccggggccgccgcggggcccgttcttacaacatctccaacactgccacctccgatgcaggcctatgcatttaaacctccccctcgacctgatttcggtacttcgggaagaacaatcaaactgcaagccaatttctttgaaatggacatccccaaaatggacatctaccattacgaattggatataaagcctgagaaatgtcctagaagagtgaacagagaaatagttgagcacatggtgcagcactttaaagcccagatctttggagatcgcaagccagtatttgacgggagaaaaaacctctacaccgcaatgccgcttccaatagggagagataaacaggtggaattggaggtcacgttgccaggagaagggaaggatcgaatattcaaggtagccatcaagtggatgtcggttgtgagccttcaggcattgcacgacgctctctccggtcgtcttccaagtgttcctttcgaaaccattcaagctcttgatgtggtgatgaggcacctgccctctatgagatatactccagtgggccgatctttttttactgcatccgaaggatgttcgaatcctctgggaggtggcagagaagtctggtttggattccatcagtcagtcaggccttccctgtggaaaatgatgctgaacatcgatgtctctgcgacagcgttttataaggcccagccagtgattgaatttgtatgtgaagttcttgatttcaaaagtattgaagaacaacagaaacctctgacagattcccaaagggttaagtttaccaaagaaattaaaggtcttaaggtggaaatcactcactgtggacagatgaaaagaaaataccgagtatgcaacgttacgagaagaccagcaagtcaccaaacatttcctcttcagcaggagagcggccagactgttgaatgcactgtagctcaatattttaaggacaggcacaaattggtgttacgctaccctcacctcccatgtttacaagttgggcaagagcagaaacacacgtaccttcccttagaggtatgcaatatagttgcaggacagagatgtattaagaagctgacagacaatcaaacttctactatgattagagccacggcgagatcggccccggatcgtcaggaagagatcagcaaattgatgcgaagcgcaagttttaatactgacccgttcgttcgtgagtttggaatcatggtcaaagatgaaatgacggatgtcacggggagggtgttacagccaccttcgattctctacggaggccggaacaaagcaattgcgaccccagtgcagggggtctgggatatgaggaataaacagtttcatactggaattgaaatcaaagtctgggccattgcgtgtttcgcgccccaacgccagtgcactgaagtccatcttaaaaccttcacggaacaactgaggaaaatatccagagatgcaggaatgcccatccaaggtcaaccttgtttctgtaaatatgcccagggagcggacagtgtggaacccatgttccgtcacctgaagaacacctattctggtctgcagcttgtggttgtcattctacctgggaaaactcctgtttatgccgaagtgaagcgtgtcggtgacaccgtgctgggaatggccacgcagtgtgtgcagatgaaaaatgtgcaaaggactaccccacagacactttccaacctgtgcttaaagatcaatgtcaaattaggaggagttaataacattttattgccacaaggaaggcctccggtatttcaacagcctgtcatcttccttggtgctgacgtcactcatccaccagctggagatgggaagaaaccatctattgctgctgttgtaggcagcatggatgcccatccgaaccgctactgtgccactgtgagagtccagcagcaccgccaagaaataattcaagacttggctgccatggttagggagctgctgatccagttttacaaatcaactcgattcaagccaacgcggatcattttctatagagacggtgtttccgaggggcagtttcaacaggttcttcatcatgaattgctggctatccgagaagcctgcattaagctagaaaaagattaccagccagggattacgttcattgtggtgcagaagaggcatcacaccaggctcttttgcaccgacaaaaatgaaagagttgggaaaagtggaaacattccagcaggcaccactgtggacacaaaaatcacccacccttcggagtttgacttctatctgtgtagtcatgctggtattcagggcacaagcagaccatctcattaccacgttctctgggatgacaatcgcttctcttcagacgaactccagatcctcacttaccaactatgtcatacctacgtccggtgtactcgatctgtttccatccctgcgccagcctactatgcacacctggtggccttcagagccaggtatcatttggtggataaagagcacgacagcgccgaagggagccacacttctgggcagagcaacgggcgcgatcaccaagctctcgcgaaagctgtccaggtccaccaagatactttgcgcaccatgtactttgcttgacctctggccgtgttgaggaactcagttctgagttggattcacaagagaccagctgcacttagaccaacagttgcccgagctaccgcaacagccagcaaaggagtgatgcatctttattttttaaatatttggggggtgggggggtggggaaaggatgggctgatgatgatggtgattgtgattctatttgcaagaaagcttttcatccagaatttcagacttgagcgtacaaaaagaattgcacagcttttaagacatgtggatatgccaaaatcgaaagctgcttgtcgggagaaacgaaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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