2024-04-26 06:51:16, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_026653490 5877 bp mRNA linear VRT 15-JUL-2019 DEFINITION PREDICTED: Terrapene carolina triunguis copper-transporting ATPase 2 (LOC112117659), mRNA. ACCESSION XM_026653490 VERSION XM_026653490.1 DBLINK BioProject: PRJNA435426 KEYWORDS RefSeq. SOURCE Terrapene carolina triunguis (Three-toed box turtle) ORGANISM Terrapene carolina triunguis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Testudinoidea; Emydidae; Terrapene. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_020664490.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Terrapene carolina triunguis Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5877 /organism="Terrapene carolina triunguis" /mol_type="mRNA" /isolate="2854851" /isolation_source="Kennedy Woods, Forest Park" /sub_species="triunguis" /db_xref="taxon:2587831" /chromosome="Unknown" /sex="male" /tissue_type="blood" /country="USA: St. Louis, MO" gene 1..5877 /gene="LOC112117659" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins, and 97% coverage of the annotated genomic feature by RNAseq alignments" /db_xref="GeneID:112117659" CDS 77..4705 /gene="LOC112117659" /codon_start=1 /product="copper-transporting ATPase 2" /protein_id="XP_026509275.1" /db_xref="GeneID:112117659" /translation="
MERESDGDLKRDQSTLATLNNKNVTLVTFHKRQSSNGVPALLIVSEPSKSGSPGKAGDCSQKEEKVSQSYNVGASEVNSMHALSKSSSPASCVWEPVMNQNFAFDNTGYEGSAENMPSLLPQTSTVTVNILGMTCQSCVQSIEGRISKVKGIVSIKISLEQSNAVIKYIQSEIGLQEICQEIGEMGFDANIAEGRTTASSVRSTSLGEALLKLRVEGMTCQSCVNIIEGKIGKLHGVLRIKVSLSNQEAVIAYQPYIIQPEDLKNHIDNMGYESTIKSKLAPLKLGMIDLERLQTTSTKKTPASLNNSNVEPVVGKMNSTTTMTLGVEGMHCKSCIKNIEGNISGLPGVHSIKVSLEHKNAVMQFNPNVITPVSLQQAIEALPPGNFKVSLPNGVEANNRELLSKAAFSSPQFRSTSSGDQLTSTSVLSIDGMTCGSCVQSIEGTMSQRKGVQHISVSLAERTGTIHYNSAVTNSEELRGAIEDMGFDASILTDTTTWKYMDQPLFRDAAIQPNAWESASQRTENVSESYHQGYMSDVQPKNSYLSSPKPPNVATTEKCFMQITGMTCASCVSNIERNLQKEDGIVSVLVALMAGKAEIKYKPESIQPLEIVQLIQNLGFNATVIEDHTATDGNAELIITGMTCASCVHNIESKLTRTNGIFYASVALATSKAHIQFDPEIIGPRDIIQIIEGIGFHASLAKRDPNAHNLDHKKEIKQWRKSFLCSLVFGIPVLILMIYMLIPDGQQHGTMVLEQNLIPGLSILNLLFFVLCTLVQFLGGWYFYVQAYKSLKHKTANMDVLIVLATTIAYIYSCVILVVAIAEKAEESPVTFFDTPPMLFVFISLGRWLEHIAKSKTSEALAKLMSLQATEATIVTLGPDHSVIREDQVAVELVQRGDIVKVVPGGKFPVDGKVIEGSSMADESLITGEAMPVTKKPGSTVIAGSINAHGSVLVNATHVGSDTTLAQIVKLVEEAQMSKAPIQQLADKFSGYFVPFIIIISTVTLLVWITIGFINFDVVQKYFPHQNKHLSKAEVILRFAFQTSITVLCIACPCSLGLATPTAVMVGTGVAAQNGILIKGGKPLEMAHKIKTVMFDKTGTITCGVPKVVRMLLLGDMAKLSLKKVLAIVGTAEASSEHPLGMAVTKYCKEELGTESLGYCTDFQAVPGCGISCKVRSVEAVLGQSEQSVNEQNAYLSSVSTISLGHSSSIMVSESDGAAAPLTYSVLIGNREWMRRNGLLISSDVNDAMTGHEMKGQTAILVAIDGALCGMIAIADTVKQEAALAVHTLQNMGIDVVLITGDNRKTAKAIATQVGIRKVFAEVLPSHKVAKVQELQNEGKKVAMVGDGVNDSPALAGADIGIAIGTGTDVAIEAADVVLIRNDLLDVVASIHLSKRTVRRIRINLVLALIYNLLGIPIAAGVFMPIGIVLQPWMGSAAMAASSVSVVLSSLQLKCYKKPGTERYEAKAQGHMKPLTPSQISVHIGMDDRRRDSPRPTAWDQISQVSLSSLTSNKLPGHGGFREEEGGKWSLLANDRDEEQYI"
misc_feature 455..643 /gene="LOC112117659" /note="Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371" /db_xref="CDD:238219" misc_feature order(473..481,488..490) /gene="LOC112117659" /note="metal-binding site [ion binding]" /db_xref="CDD:238219" misc_feature 710..901 /gene="LOC112117659" /note="Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371" /db_xref="CDD:238219" misc_feature order(728..736,743..745) /gene="LOC112117659" /note="metal-binding site [ion binding]" /db_xref="CDD:238219" misc_feature 1046..1222 /gene="LOC112117659" /note="Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371" /db_xref="CDD:238219" misc_feature order(1064..1072,1079..1081) /gene="LOC112117659" /note="metal-binding site [ion binding]" /db_xref="CDD:238219" misc_feature 1355..1546 /gene="LOC112117659" /note="Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371" /db_xref="CDD:238219" misc_feature order(1373..1381,1388..1390) /gene="LOC112117659" /note="metal-binding site [ion binding]" /db_xref="CDD:238219" misc_feature 1757..1945 /gene="LOC112117659" /note="Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371" /db_xref="CDD:238219" misc_feature order(1772..1780,1787..1789) /gene="LOC112117659" /note="metal-binding site [ion binding]" /db_xref="CDD:238219" misc_feature 1982..2173 /gene="LOC112117659" /note="Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371" /db_xref="CDD:238219" misc_feature order(2000..2008,2015..2017) /gene="LOC112117659" /note="metal-binding site [ion binding]" /db_xref="CDD:238219" misc_feature 2237..4378 /gene="LOC112117659" /note="P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B; Region: P-type_ATPase_Cu-like; cd02094" /db_xref="CDD:319783" misc_feature order(3230..3232,3236..3238,4307..4309) /gene="LOC112117659" /note="putative Cu binding site [ion binding]; other site" /db_xref="CDD:319783" misc_feature order(3362..3370,3572..3574,3758..3766,3854..3856, 3974..3982,4040..4042,4049..4051,4058..4060,4115..4117, 4124..4126) /gene="LOC112117659" /note="putative ATP binding site [chemical binding]; other site" /db_xref="CDD:319783" ORIGIN
ttttctgcttatttatggaataacatctcttaaaaattcccatttggcattacaatatttgaagcctggaaagataatggagagggaatcagacggtgatttgaaaagggaccagtccaccctggctactttaaacaacaaaaatgtaaccctggtgacttttcataagcggcaatcatctaatggtgtgcctgcactactgattgtcagcgaaccctccaagtcaggctctcctggaaaagcaggcgactgctctcagaaagaagagaaagtttcacagagttacaatgtgggagcatcagaagtcaacagcatgcatgctttgtctaagtctagctcccctgctagttgtgtatgggaaccagtcatgaaccagaattttgcctttgacaacactggctacgaggggagcgctgaaaatatgccctctctgcttcctcaaacgagcaccgtcacagtcaatattttgggtatgacttgccagtcttgtgtgcagtcgatagagggcagaatttccaaggtgaagggcattgtgagcatcaagatctctcttgagcagagcaatgctgtaataaaatatatacagtcagaaataggtctccaagagatttgccaggaaattggagaaatgggctttgatgccaacattgcagaaggaagaactacagcatcatctgtaagatcgacgtccttgggagaagcactattgaagctgcgggtagaaggtatgacatgccaatcgtgtgtcaacatcatcgaaggaaagattggaaaactacatggcgtgctgagaatcaaagtctccctcagtaaccaagaagcagtcattgcttaccagccttacatcattcaacctgaagacctcaaaaaccacatagataacatggggtatgaaagcacgattaagagcaagctagccccattaaagcttggtatgattgatctagaacgcttgcagactacaagcacaaagaaaactccagccagcctgaacaatagcaatgtggagccagtggtgggcaaaatgaatagtacaacaactatgacactgggagtagaagggatgcactgcaagtcttgcatcaaaaacatcgaaggaaatatatcaggtcttccaggtgtacacagtattaaagtgtcattggaacataaaaatgctgttatgcaatttaacccaaacgtaattaccccagtatctttgcaacaagccattgaggcccttccacctggtaactttaaagtatccctccctaatggagtggaagcaaataacagagagcttttatcaaaggcagcattttcatcacctcagtttcgtagcacgtcctctggggatcagctgacaagcacatctgtacttagtattgatggaatgacctgtggatcctgtgtacagtccatagaaggcacaatgtcccaaaggaaaggggtacaacatatatcagtttcgttagctgaaaggactggaaccatacactacaattcagctgtaactaattcagaagagctaagaggtgctatagaagacatgggatttgatgcttccattctcacagataccaccacttggaaatatatggatcaacctcttttcagggacgctgcgattcagcctaatgcttgggagtcagcttcccagagaacagaaaatgtttctgaatcgtatcatcaaggctacatgtctgatgtccagccaaagaattcttacctcagtagtccaaagccacccaatgtagcgacaacagaaaagtgctttatgcagatcacaggcatgacctgcgcatcatgtgtgtcaaacattgaaagaaatctgcaaaaagaagacggcatcgtttcagtgctagtagcactgatggcaggaaaagcggagataaaatacaagccagagagcattcagcctcttgaaatagtacagctgatccaaaacttgggcttcaatgctacagtcatagaagatcatactgctacagatggcaatgcagagcttattattacggggatgacttgtgcttcctgtgttcacaatattgaatccaaactaaccagaactaatggcatcttctatgcctcggtagcgcttgctaccagcaaagctcacatccagtttgatcctgaaatcattggacctcgagatattatacaaattattgagggaattggttttcatgcttccttggccaagagagaccctaatgctcataacttggatcacaaaaaggaaataaaacaatggaggaaatctttcttgtgcagcctagtgttcggaatccccgtcttaatcttaatgatttatatgctaatacctgatggccaacagcacggcactatggtgctggaacaaaatctaattcctggattatctattttaaatcttctcttctttgtcttgtgcactttggttcagttcctcggtggatggtacttttatgtccaagcctacaaatcactgaagcacaaaacagccaatatggatgtactgattgtgctggccacaactattgcttatatatactcttgtgtgatcttggtggtggctatagccgaaaaggcagaggaaagccccgtcacgttctttgacacaccacccatgttattcgtattcatttctcttgggagatggttggaacacatagcaaagagtaaaacatcagaagcacttgctaaactaatgtctcttcaagctactgaagctaccatagtgactcttggacctgaccactccgtcatcagggaggatcaggtggctgttgaactggttcagcggggtgacattgtaaaagttgtccctggtgggaagttcccagttgatggaaaagtcattgaaggcagctctatggcagatgaatctctcattactggggaagccatgccagtcactaaaaaacctgggagcacagtgattgcaggttctataaatgcacatggctcagttcttgttaatgcaactcacgttgggtctgacaccaccctggcacaaattgtgaaattggtagaagaagctcagatgtcaaaggcacccatccagcaattggctgataagtttagtggatattttgttccatttatcatcatcatttcaacagtgacattgctagtgtggatcacaattggctttataaactttgatgttgttcagaaatactttcctcatcagaacaaacacctctcaaaagctgaagtaatactgagatttgcatttcaaacctcaatcactgtgctgtgcattgcatgcccctgttccttgggcttggctactccaacagctgtgatggtgggcacaggcgttgctgcccagaatggtattctcatcaaaggtggaaaacctctggaaatggcccacaagataaagactgtgatgtttgataaaaccgggaccatcacctgtggcgttcctaaagtcgtgaggatgctcttgctaggggacatggctaagctgtctctaaagaaggtacttgcaattgtcggcactgcagaagccagcagtgagcatcccttaggaatggctgtcactaaatactgtaaagaggaacttggcacggagagcctgggatactgcacagattttcaggcagtcccaggctgtggaatcagctgtaaagtccgcagtgtggaagctgtactgggccagagtgagcagagtgtgaacgagcagaatgcttacctgagcagtgtcagcacgatttcgctgggacacagttcatcgatcatggtctctgaatctgatggtgcagccgcccctctgacatactcagtgctgattggaaatcgtgaatggatgagacggaacggcttgcttatatccagtgatgttaatgatgcaatgacaggccatgaaatgaaaggacagacagccatattggtggctatagatggtgcgttgtgtggaatgatcgcgatagcagatactgtcaaacaggaggcagcgcttgctgtgcacaccctgcaaaatatgggaatagacgtggtgctaataacaggggacaacagaaaaactgcaaaagcaattgctactcaggttggcatcagaaaggtctttgctgaggttctgccctctcacaaagttgcgaaggttcaggaactccagaatgaagggaagaaggttgccatggttggagatggagtcaacgattccccggcattggctggagcggacattggcattgctattggaacaggcacggatgttgccattgaagctgcagacgttgttcttattcgaaatgacttactggatgtggtggctagtattcatctatcaaagaggacagtaagaagaatacgaataaatctggtccttgccttaatttataatctgcttgggatacctatagcggcaggggtgttcatgcccattggaattgtgctgcagccctggatggggtcagctgcaatggcagcttcttcagtatctgtggtgctatcttccctgcaactgaaatgctacaagaagccaggaactgaaaggtatgaagcaaaagctcaaggccacatgaagccactgacaccttcccaaatcagtgttcacattgggatggacgacaggagacgggattcacccaggccaactgcctgggatcagattagtcaagtgtctctctcttctctgacttcaaacaagctccctggacatggcggttttagagaggaagaaggtggcaagtggtcactgctcgctaatgacagagatgaagaacagtacatttaaatgctgcatcccatcgctgaacatgaagtcactgagattcttcaccattggcagtgatgaccaagagccccacataagtagaaatggagccctgatgttccagtttgcaaagcagctcagaaattcagcattagattgtgtgaattatgatttgtcagttcacaaataattcccaggcattgaaaaagcttgaggccctacaatgaattatgccctttacttcttgcacagtgtgaagttggagtccacaaagcctaacatgacccctacattgtggatcaattactgagaatcaaaatcacaggctgtccagtcttattgactctcttgtgcttctttatggaacttctgtgaaaagattttaaattaaatctgccaaattcattttctaggtcaaagtgaaaaccaatacaccagacatcaaatagctctatatttaaggatcatatttttatatagaatcaaatctagtcatctcaacatgggaaaattttatatttagggctcagacaacatgtgcgtgcttgattagcacaaaaatatattaattgtatattttgctgtgcataaaacttgtaaaattctgtttcaaagatgatcacgtatcttataacatcactaattttattttatgaaacgtctcaatttgccaaacttgcttgctggttttccagttttctcctgcgtgttcttcagagccctttcttcccagtagagttccacctttagacatttgttatgtcttcagattttcccgtatgggatgagatcctgcaaggcgctggggaccctgcaattcctgttgaaatccacaacgtttgagctcctttcagtgttttactggttcaggatagctcaccattttgtagaatcttttgacgctcctgataactgcagcattcagctgtttctttgatgtgcagagtggcgtaaatgtgccagtgtaagccgtcctggtggctcagttattggtacgttcatgctaatacattgatgagattctttccgacttggcgcgcttgttcttggtcctgatgggagctagaatgttagaagtgacatactcagtctctgtgttggtggattagctaacaatgctcttcaatgactctatggaagttgtggggacacctcaaaagctaagattcaacagagaggtggggtttgggagg
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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