2024-04-19 22:52:20, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_026371821 11507 bp mRNA linear VRT 13-APR-2020 DEFINITION PREDICTED: Anabas testudineus protein argonaute-3 (LOC113169988), transcript variant X1, mRNA. ACCESSION XM_026371821 VERSION XM_026371821.1 DBLINK BioProject: PRJNA489257 KEYWORDS RefSeq. SOURCE Anabas testudineus (climbing perch) ORGANISM Anabas testudineus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Anabantaria; Anabantiformes; Anabantoidei; Anabantidae; Anabas. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_046625.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Anabas testudineus Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..11507 /organism="Anabas testudineus" /mol_type="mRNA" /db_xref="taxon:64144" /chromosome="16" /sex="male" gene 1..11507 /gene="LOC113169988" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 16 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns" /db_xref="GeneID:113169988" CDS 792..3395 /gene="LOC113169988" /codon_start=1 /product="protein argonaute-3 isoform X1" /protein_id="XP_026227606.1" /db_xref="GeneID:113169988" /translation="
MEIGTTGAVGAQSLFSMPRRPGYGTMGKPIKLLANCFQVEIPKMDVYLYEVDIKPDKCPRRVNREVVDSMVQHFKVTIFGDRRPVYDGKKSLYTANPLPVAPTGVDLDVTLPGEGGKDRPFKVSIKFVSLVSWHMLHEVLTGRSMPEPLELDKPISTNPVHAVDVVLRHLPSMKYTPVGRSFFSAPEGYDHPLGGGREVWFGFHQSVRPAMWKMMLNIDVSATAFYKAQPVIQFMCEVLDIHNIDEQPRPLTDSHRVKFTKEIKGLKVEVTHCGTMRRKYRVCNVTRRPASHQTFPLQLENGQTVERTVAQYFREKYNLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLVRSANYEADPFVQEFQFKVRDEMAHVTGRVLPAPMLQYGGRVSTEHFMNRTVATPSHGVWDMRGKQFHTGVEIKMWAIACFATQRQCREEILKGFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYAGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINVKLGGINNILVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPSRYCATVRVQRPRQEVIQDLASMVRELLIQFYKSTRYKPTRIIFYRDGVSEGQFRQVLYYELLAIREACISLEKEYQPGITYIVVQKRHHTRLFCADRNERVGRSGNIPAGTTVDTDITHPYEFDFYLCSHAGIQGTSRPSHYHVLWDDNCFTADEFQLLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHVSGQSNGRDPQALAKAVQIHHDTLRTMYFA"
misc_feature 1008..1292 /gene="LOC113169988" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 1320..1472 /gene="LOC113169988" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 1473..1835 /gene="LOC113169988" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1629..1631,1674..1676,1716..1718,1728..1730, 1782..1784,1803..1805,1809..1811) /gene="LOC113169988" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1968..3266 /gene="LOC113169988" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(2400..2402,2412..2414,2448..2459,2466..2468, 2490..2492,2499..2501,2511..2513,2523..2525) /gene="LOC113169988" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(2604..2606,2610..2612,2820..2822,3234..3236) /gene="LOC113169988" /note="active site" /db_xref="CDD:240015" ORIGIN
cgacactgagcccacctcttcctgtcggtgtcagaaaagcaacttcaccatatttagctggcttaccgaggctccgcagagtggatctgtcaaccaggctccaaatcctgacacgtatcggcggatacgctccgatgttgacagttttatcatcgccccgggttagaaactccagcaggcgacgactcgggggcacggtgctgagcggacggggccgtgacagcggctgtttttaacgcgataaaagtcgccgtcgtctgtcacagttccaactgcccaacagccgcgctagcccgctagctaattagtggagctaccccgacggtgttcgtgccgtagattagggatttatgtggttttgtcgctgcttggctacaagtatggattcgtttggactcattgaccctgctgtgatgatatcctgacagctcctccgctccgttcctgccactttcatccgcctggctagcgagctaactcggctaactagcaggtttccactgccacagcgtcgctgagctgctcgtcgcctttgccgtggcagtgacatccgattgcaaacgttgaccgtgcgcggacgccggtgtacgggggcgcagaacacccccctaaccgtaccccaaaggagccccttcgaaagaggaaggggagctagcagacgcctggttagtcggccgctccgcgctgcagaggcggtgcactgccgaaggagacaccggattgaacggaggaagagtccctaacgtttgacaactgtgatccgggaagtgaaccgggcagggacctcatgaatggaaatcggaactacaggagccgttggggcccagtccctgttctccatgccacggcggcctggctatggcaccatggggaagcccatcaagctgctggccaactgcttccaggtggagatccccaaaatggatgtctacctctacgaggtggacatcaagcctgacaagtgcccacggagagtcaacagggaggtggttgactctatggtgcagcacttcaaggtgacaatctttggggatcgcaggccggtttatgatggaaagaagagcctgtacacagctaacccactgcctgtggcacctacaggggtggatctggacgtcactctaccaggtgagggagggaaagatcggcccttcaaagtttccatcaagtttgtatctctggtcagctggcacatgctccatgaggtgctgactggccgcagcatgcctgagcctctggagctggacaagcccatcagcaccaaccctgtacatgctgttgacgtcgtgctgcggcacctaccctcaatgaagtacactccggtgggtcgatccttcttctcagctcctgagggctatgatcatcccttgggtggtgggagggaggtttggtttggctttcatcagtctgtgcgtcctgccatgtggaagatgatgcttaacattgatgtatctgccaccgccttctacaaggcccagccggtcatccagttcatgtgtgaagtgctggatatccacaacatagacgagcagcctcgccctctcacagactcgcatcgggtcaaattcaccaaagaaattaaaggtttgaaggtggaggtgacgcactgtggaaccatgcggaggaagtaccgtgtctgcaatgtgacccgccggcctgccagccatcaaacgttccctctacagttagaaaatggtcagactgtagagcgtactgtagcccagtacttcagggagaagtacaacctgcagcttaaatacccacatttgccctgtctacaagtgggccaggagcaaaaacacacctatcttcccctggaggtgtgtaacattgtagctggtcaacggtgcatcaagaagctgacagataatcagacctccactatgatcaaagccacagctcgttctgcacctgacagacaggaggaaatcagcagactggtacgcagtgccaactacgaggcagacccatttgtgcaggaattccagttcaaggtgcgcgacgagatggctcacgtgacggggcgagtgctacccgcccccatgctgcagtacggcggcagggtgagcacagagcactttatgaaccgcactgtagccacgcctagccatggggtgtgggacatgaggggaaagcagttccacacaggagtggagatcaagatgtgggccattgcctgtttcgccacacagaggcagtgtcgggaagaaatcttgaagggtttcacagaccaactacgtaagatctctaaggatgctgggatgcctattcagggacagccatgtttctgtaaatacgcccagggagcggacagcgtggagcccatgttcagacacctgaagaacacatatgccggactgcagctcataattgtcattctgccaggaaagactcctgtttacgcggaggtaaagcgtgtgggagacaccctcttgggcatggccacccagtgtgttcaggtgaagaacgtggtgaagacgtctcctcagaccctgtccaacctctgcctcaagatcaatgtgaagctgggcggtatcaacaatatcctggtgcctcaccaacgaccatcagtatttcagcagccagtcatcttcttgggagccgatgttacgcatccacctgctggagatgggaagaagccttcaatagcagcagtggtagggagtatggatgcccaccccagcaggtattgtgccacagttcgggtccagaggcccaggcaggaggtcatccaggacttggcctccatggtgcgggaattgctcattcagttctataagtcaactcgctacaagcccaccaggatcattttctacagggatggagtttcagaaggccagttcagacaggtgctgtattatgagctgctggccatccgtgaggcctgtatcagcctggagaaggagtaccagccaggcatcacctacattgttgtgcaaaaacgccaccatacacgcctcttctgtgccgaccggaacgagagagttggacgtagtggaaacattcccgctggtactactgttgatacagacatcacgcatccctacgagtttgacttttacctctgcagtcacgctggaatacagggcaccagtcggccctcccactaccatgtactgtgggatgacaattgtttcaccgctgacgagttccagctgctaacctaccagttgtgccacacctacgtgcgctgtacccgctcagtctccatccctgcgccagcctactacgcccacctggtggccttccgtgcccgctaccatctggtggacaaagaacatgatagcgctgagggcagccatgtgtctggtcagagtaacggtcgggacccccaggcgctggccaaagctgttcagattcaccatgacaccctgaggaccatgtacttcgcctgagctacaccaaccctccctaaccattaccacccttaacacacacataaacacacacagacacatccgtacacgtctggcttgccagtcaaggagtcctcataggtgcaagtcccgcccccccacacgcctagtcaatccggacctgacactgtgcagaggaaagcagggaggagggaggggaggaggcacccccacactggactgaggatgcaaacgctgctttaaaaacaaacaagagagaaactcagcactattatgcaatattaaaccagccaaccagtttatttttacccttaacacggcccctattcatcacccctcttagctcttctgtttgtctcctttacttgtggcctagtagctgttgtttgttcactctgtcttcatagtccactaatctgctcctttgccatctacagtacctcaagtcagtttgagcagcagcacttttacattctgtcagttttcctatagcttgttgtggatttcccctgttttctaaatgaaggtgcagagacgcaagggtcagactcggtagttaagtggtgtctgatttcttctggaatgtagttatttcattggaccagaggtcctcccagttgccacttttaatttttttattttttctcttgtgtatcctctgatctatcacatttcttcattgtgtgaaatcgccagttgtttagaacatgttcttttgagtacactgccacctattggtgacaaggtgtaaatgccctcttgaagtcccaacaaggagttgttgtcttgtgaggttttagattggttttgatttctctttagcagtcagctgtcacatttaaacaggggcagtttatattgactgatattatcagttgcagccatctatgagtttatttaaagtataacactgtcttgactctctgtgaaacattttatgaacttttttaaccatttaaaataatatttttattcttagtagtcatcatgcattcatttcccccagtactttatctcacatttccctgttttgagtttgagatggtgggtaatagcgatcatgtcagtcgtttcctttagtgcaataatcagctgaacgaagggaagaggtttttcagacgacttttgacgattcggaacaacagttacacgtttcatttgagagcgaatgtccttgaaaggattaaaatttgccacttgcaaggcactttcacatattcctcctctgagatgattgaaaagcacgtttttgttagtttgccctcactattgggcaaaaatggtgcaactgcagttctggtgatttattttttttttttcatgttttacttgaattgaaggattttatgcgcctctgtggtttgagagtactttatcatcaatgggcataatttcagaattcatcggtttgctaatgaggctgaatttcttgattcttatgagttaaccattttggtaaacaaagctgaaaagaacaaagtgcagactcaaggccataaagcggtagtattcaagtgcctggtgagagtttaagcgtttgatcatcaaaagctgcatgacataacttatagggatcctgtttcagtgggtaatcaaaatataaattttaactaatgaacagtataaggtagtttgaagaaagtttcacccgatgcctcttctcaacaaccatctactgacttttctatacatctcattcaaatcatagtaagatcaatatatttattgtgttggcctatacagcagtgttaactgttgactttgctttggaggagcgatcaagcaaagcaggcagagttctctttttgcttactattcaccagacatggatccagctgctaaagtgtgtttttgtaccttgcgggccagtttcattggcatggaatcagccttgtcataaagaaattctttcaataaactatttctttccttagacagtcaagtccgggactgggttttattcctgtctatgaaacctgcccaaagctaggactgacttcagagcaaagccgaggagtcaagtggatgaccaacatttgcagcagaagtacagctgcttgttgatgtgaaacgtcttggcagaattacggtttggtcaccacttagcacttctgtgccgctgatgacctgaagctcgtccaggggtttgtttttaaaagttatctgcactaaaagaagcatgtgtttcgggaccgaacacaggcatggtgctattctgtctgaattagaatctgaagctgaacctctatatgaacaggagaataggatggaaaacggtaaacctcactcactgaaggacaggagaaggtccgactgctttggtgttggtgtggggagatttaggatttccctgtgttgttatggtcagcattgagaacctgtcaacggtacaatggcagaccttcccttggatcggtgatgtacaatgtagggtcctgcatccgctgactgccttttgtaggctagccttccagcgtggaagccagtggctttgagccttcataatttcactagtgtctgaaagcctttttaaaaagccagattgaaagtatatttgtacattttaaattatgtaatgcaccacttatttttgctaacagaaaaaaaatgtctaattattaatcttagtaattaatgtatcataataagtaacggttaaaacggtataataacaaagtttgattattgcaatagactgttgttcctgtgtcactgtttaacgtatagtgtatgtgtgatcagtggtggggttgttgaaactagtgatgtgtgtttggactgtcatactgttattgatagggatgtggaccgccttctgctttaatgtttggaaaaaaaatagctgcaagacattgaatgctcatttctcctcactttaatttagatgttggtacagctgaagttttatcatactagagaagagaatctcaaaggagaaaatattaacgtaccccaaaagacttgtattaagatattacatcccagtagttagggtcagggttagggcgacaagtggtagaatagaagaagagtcggtttatattttgagcttctgctctcgaatgtcctcgggttttctgcaactggtgctgacgcctgctccttatcaggagagagagtgaaaaggaataggcaagtggttttgagagtgttgtatatccatttcatggacatgtgtgatcaaagaataatgtaacaagaggtagtacttctccattcctttgtgttagagcctcgggggatttacgttggattgcaactactgttgctttcctcagactcgtctttttacccgagacacttcgcgcgctcacaaatacaaagttagcctcccggtaaatctgcggtgtgacaaagcccataatcttattgttgctctctttcccctttgctcccaaacatttactcccgtgtgctagaggacattccacggccgtacaatcccatccgatccccctgggaggcgtaagaaagattagagctgaaggacaacatgttgggatatagcgagtcctgtgactcattcaagtattgcgtgtgtgtgtgtatttgtgtgtgtgtgtgtgtgtgttttggaaggattcaaagctaatcagtaatagcttggatagtgtgtggaaggtgatgttggaagttgaacagtttggaaagttgattgtaagaattaggatccatttctaacttgctatctctgctgtctgtaatgaatgttcagtttgtgtataaactacactcgtgggggcagttgaacacatgtttacatagcagatgtgtttgcctaccttaaaactgaaatgtcatcagcttggctttgcaaatattagctagcagtgacatgacctaacgtgagcaaaaccatttgaggcctgtggaattgaatgcttgaagggatgcaaagacattatttatttggacatttggaatttttcctcaactgtcacctgcgttgcccagcaggggaaatgtcttgtttgtccttccagttctattaaaattactctgagactggattgaaagaaggacacattcagttcacagcttgcagctacctgtggcctttggctctcagttaggattactaacaatacaataattttatgggagctgaagaacaaacaccttatccacaaaactgtctggagaagacaaatcgccaaattcactgtaaaaggtcagtgtctcccttttgaaatggaaatgaaggtgttttccattttgagtaatcaataatatgcctgattttggttgctccctatttgcagtggaaggtagcagtggagcgagaaatagtccacagaaagtgcctttcctcttgatggtgctgtaaatttgaaagagaaaatgtaaaatcaaagaaatagaatctccttttcaagaacacattgcaatgcaggaacgactgcattttacacacacacactcacacacacactcacgcgcgcacacacacactctcacacactcactgtacgtgtttattttgtttagagatggcaatgctaactggtgtttcatgtgttttagacattaagcctacatagaaatagaatatacgccaagtatagggttgtggtcgagctttcgcttcctagtggatttagtgtcttggaccaatggtgtcgttggtacagtgcaatgtgaggtggtgtaggtggttgggggtcatagctgacactagtgtggtgtgacacagcctagcctatgaatgacaaacatagcacagcactttagagactgccactctctctcagacacatagccaaaaggtttcaatctctgtccctccagtcccctcctagctcccgttcaggaggaggagagggtccaaacctcagcaaaacgaggaatcgaagggatgtgtgttaccaaatgaagcagtcggtcattaaaaagtgtgcctcatgctcttgtgactttgttgttggctcagttgagtcagtgtgctctccgtggcggttttccctctggaacagccaccgaacactgttatagctagggctgggtgtcaaaacttgatatcagtacctcccagatttttggcatcaaaattttgaagcatcccaaagtttaaaacaaaaaggcaggattttagcaccgaagactcgaggctgtcttcttgaagggcattttttaattaaagaaaacaacatctacagtttaatgcaaatgcttgggtctcctttcactttctgcacattttacaatttaatttgcagctgaaaatatgtgtgtgacggtctacttgcaataacccagattgtgaaactgataaacacatttttttgcaaattccattaaaaaattcaaaaaataattgaaatgctaaagtggctagacctaaagcctcagactggctttaggtcaaatggtgtttctaggactcaatgggcacggcaccttgcagccacgtgacctaaagcttggatagattgtgtcagtgcttttgtagaggagagatttcgatgtttaatacatttgcagagatttcaacatttctaaaaatgttttcactttgtcattatgggttatttttcgtagattaaagggaaaaatgtgtagtgaaatgtgcaaaaagtgaaacagtacaaacatttacatagaaattaaagaaaacgaatgacagtgaatgacagtgacacactgctgtctgtaggtcagtgaagtgtcactcattcaggtgtcattctgaggcaggtcgacagatacaacaaacagaaccagtgttaatattgaaaccttgctgatgcccagccctagtagtagcccatggcggtttttttcatcttggtgtaatgccctgccatgtgtctcgtccccgatggagggaatgtgtgcgcagcagtttccctgtcttgagctggggcagggagtcgactgaaaaccgagggtggtctgtagttctgtgagtaccttttcagtccagggggtgaaatctttctattacaagagatctcaaaaaacactgcacctcacttaccttggtatgctgcatatgttatactacatgaaagaaaactgcaaattgcttttattatgacatataatgcttgagtaatgcctgattgcgatattcttataagtaactattttagagtcaaaataagtataactgtaaaaattattctgttttgtcttaaaacttatccgattttgaaaaattgttcttgagccgacttttattttgttgtcctatttaaatgtgttgttctttaaatatatatatgaaatatataaatgcggaatattttatggtgtatttattgagagtgcatttaagcggctggagtctccgcatcatattgcaacatggtgggggcgtggagccagcaggacgaggccttttgtccctctccctccatgttgacaccttctagatacgcaagcacaacaatatggagggggtgggaggtggaggaaaagcgggaggtggatttgactctttaaaaaaagcagtgtgtcaagttctgatatttacaggttgactcctccttcttcttttcttaatgttttttttttttttaccctccactgtccttttacgaactcaaaaggccaaattccgacccccacatgttgcagctcatctctgacgaagggaaccatttctgaaccacactgacttaagtgtccaatagctgacttctcccccccctaatccaagctgctaattggtacgttagccatgtcaaatcccccaagccagtaaaagacaggtgggagagtgtaaaacacaaaaaaatgtcaggggaaggaaggaaagatgttggagagacgatattgtggtggtgaaaggttgtagcgtaggcgtcgcttctttcctttcctcctgtcagggttttttgtttttcctctttttgtttttcttgtgccagaacattatacagcaggaacaggtctcattccaaataaaaaaagatatctcagccttaaaaagtgttcttacccgaccgtcagatcgtatgtgacctcgtactgcctgtgctgggtggcctacctattaaacaagcctaaatacttgatctgctctaatttcccagacagcgtccgtatctcttctcacgtaaaccactagcattgctacagatcttagtgatctctgatgtatgaacaactgtacacattcaaaaagatactctgtccatttgtactgatgtcaaaaacaaagccaggtctgggtcgaagggcatttggaaacaattagtggcagttgttttacccagatttactgcctcaggacaattcacatattgtcatcaagtccaacatgctaatttctaatttgtgcaaaggtatccgatcatcattttattgtcatagattgcaaatccaaagaacagtgtttcagatgcagacggacccaggcctgatgagaaccgggaggttccccagagtgctggattacagagaactgtgcctgtataatgaaccaaggatgaactgtgttgtgatgaattgctgttgttttctttttaaaaaaaatacaaatgttggtttttccttcaccccttcggaggatcagagacatggagcttttgagtgttgtcactcctgttccaaagcaaataagcccttttgcccattaaaccaaatcatgtttggtttagtaaatgtttactgtgatgtttactctcatggctatcagatgtttaacctgttttcatcccattagcattccaataactactttgaaccaaatattgcagaagagattaggctcctgatgccgatttttccctcgtatacacatagtggtttaagtggaagacagatatttgacactggccaaggatacaatgtgtatgctgattgtccagctcatcatattgttttcagcgtagcatcactgttgtcagtcttatttcaaactaaagatcttgggctctgatacctctgagtgaggcaccagcaaacggacgtacacgtcgaacagtgaaccttcaccaccagatgatccatgtctcagtctctctgtatgttgcaaaggctctgttgtaccaacagcttgattcctttcagttttaaatgtctctttcttttgtaactcttacaggttgttggccttttagtgttgctttgcttcagtttgaagtgtatctttgactaatacttgcaataaaatgctttgcttta
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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