2024-03-29 16:02:00, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_025536602 701 bp mRNA linear PLN 29-DEC-2023 DEFINITION Aspergillus eucalypticola CBS 122712 endo-1,4-beta-xylanase 3 (BO83DRAFT_446547), partial mRNA. ACCESSION XM_025536602 VERSION XM_025536602.1 DBLINK BioProject: PRJNA479907 BioSample: SAMN05660444 KEYWORDS RefSeq. SOURCE Aspergillus eucalypticola CBS 122712 ORGANISM Aspergillus eucalypticola CBS 122712 Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Aspergillus. REFERENCE 1 (bases 1 to 701) AUTHORS Vesth,T.C., Nybo,J., Theobald,S., Brandl,J., Frisvad,J.C., Nielsen,K.F., Lyhne,E.K., Kogle,M.E., Kuo,A., Riley,R., Clum,A., Nolan,M., Lipzen,A., Salamov,A., Henrissat,B., Wiebenga,A., De vries,R.P., Grigoriev,I.V., Mortensen,U.H., Andersen,M.R. and Baker,S.E. CONSRTM DOE Joint Genome Institute TITLE The genomes of Aspergillus section Nigri reveals drivers in fungal speciation JOURNAL Unpublished REFERENCE 2 (bases 1 to 701) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (28-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 701) AUTHORS Kuo,A., Riley,R., Clum,A., Nolan,M., Lipzen,A., Salamov,A., Vesth,T.C., Nybo,J., Theobald,S., Brandl,J., Frisvad,J.C., Nielsen,K.F., Lyhne,E.K., Kogle,M.E., Henrissat,B., Wiebenga,A., De vries,R.P., Mortensen,U.H., Andersen,M.R., Baker,S.E., Grigoriev,I.V., Nordberg,H.P., Cantor,M.N. and Hua,S.X. CONSRTM DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (15-DEC-2016) DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NW_020290289). ##Metadata-START## Organism Display Name :: Aspergillus eucalypticola CBS 122712 v1.0 GOLD Stamp ID :: Gp0047226 ##Metadata-END## COMPLETENESS: incomplete on the 3' end. FEATURES Location/Qualifiers source 1..701 /organism="Aspergillus eucalypticola CBS 122712" /mol_type="mRNA" /strain="CBS 122712" /type_material="culture from holotype of Aspergillus eucalypticola" /db_xref="taxon:1448314" /chromosome="Unknown" gene 1..>701 /locus_tag="BO83DRAFT_446547" /db_xref="GeneID:37058564" CDS 66..701 /locus_tag="BO83DRAFT_446547" /note="Endo-1,4-beta-xylanase A; Xylanase A; 1,4-beta-D-xylan xylanohydrolase A; Xylanase I; Endo-1,4-beta-xylanase 3; Xylanase 3; 1,4-beta-D-xylan xylanohydrolase 3; Xylanase C" /codon_start=1 /product="endo-1,4-beta-xylanase 3" /protein_id="XP_025387135.1" /db_xref="GeneID:37058564" /db_xref="InterPro:IPR001137" /db_xref="JGIDB:Aspeuc1_446547" /translation="
MKATAAFAGLLVTAFAAPVPEPVLVSRSPGINYVQNYNGNLGDFTYDESAGTFSMYWEDGVSSDFVVGLGWTTGSSNPITYSAEYSASGSASYLAVYGWVNYPQAEYYVVENYGDYNPCSSATSLGTVYSDGSTYQVCTDTRTNEPSITGTSTFTQYFSVRESTRTSGTVTVANHFNFWAQHGFGNSDFNYQVVAVEAWSGAGSASVTISS"
misc_feature 153..683 /locus_tag="BO83DRAFT_446547" /note="Glycosyl hydrolases family 11; Region: Glyco_hydro_11; pfam00457" /db_xref="CDD:425692" ORIGIN
ccagcacaggcttctcttccagttgcatacatccattcaccagcattaatctttcttcaatcatcatgaaggctactgcggcttttgcaggtcttttggtcacggcattcgccgctcctgtcccggaacctgttctggtgtcgcgaagtcccggtatcaactacgtgcaaaactacaatggcaaccttggtgacttcacctacgatgagagtgccggaacattttccatgtactgggaagatggagtcagctccgactttgttgttggtctgggctggaccactggttcttctaaccctatcacctactctgccgaatacagcgcttctggctccgcttcctacctcgctgtgtacggctgggtcaactatcctcaggctgagtactacgtcgtcgagaattacggtgattacaacccttgcagctcggccacaagccttggtaccgtgtactctgatggaagcacctaccaagtctgcaccgacactcgaacaaacgaaccgtccatcacgggaacaagcacgttcacgcagtatttctccgttcgagagagcacgcgcacatctggaacggtgactgttgccaaccatttcaacttctgggcgcagcatgggttcggcaatagcgacttcaattatcaggtcgtggcggtggaagcatggagcggtgctggcagcgccagtgtcacaatctcttcttga
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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