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2021-01-24 05:28:31, GGRNA.v2 : RefSeq release 203 (Nov, 2020)

LOCUS       XM_025419940           15815 bp    mRNA    linear   MAM 06-AUG-2020
DEFINITION  PREDICTED: Canis lupus dingo argonaute RISC catalytic component 3
            (AGO3), transcript variant X1, mRNA.
ACCESSION   XM_025419940
VERSION     XM_025419940.2
DBLINK      BioProject: PRJNA649359
KEYWORDS    RefSeq.
SOURCE      Canis lupus dingo (dingo)
  ORGANISM  Canis lupus dingo
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae;
            Canis.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_023365164.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Aug 6, 2020 this sequence version replaced XM_025419940.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Canis lupus dingo Annotation Release
                                           101
            Annotation Version          :: 101
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.5
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15815
                     /organism="Canis lupus dingo"
                     /mol_type="mRNA"
                     /isolate="COOINDA"
                     /sub_species="dingo"
                     /db_xref="taxon:286419"
                     /chromosome="15"
                     /map="unlocalized"
                     /sex="female"
                     /tissue_type="whole blood"
                     /dev_stage="adult"
                     /ecotype="Alpine"
     gene            1..15815
                     /gene="AGO3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 131 long SRA reads, 27 Proteins,
                     and 99% coverage of the annotated genomic feature by
                     RNAseq alignments, including 31 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:112642407"
     CDS             252..2834
                     /gene="AGO3"
                     /codon_start=1
                     /product="protein argonaute-3 isoform X1"
                     /protein_id="XP_025275725.1"
                     /db_xref="GeneID:112642407"
                     /translation="
MEIGSAGPVGAQPLLMVPRRPGYGTMGKPIKLLANCFQVEIPKIDVYLYEVDIKPDKCPRRVNREVVDSMVQHFKVTIFGDRRPVYDGKRSLYTANPLPVATTGVDLDVTLPGEGGKDRPFKVSIKFVSRVSWHLLHEVLTGRTLPEPLELDKPISTNPVHAVDVVLRHLPSMKYTPVGRSFFSAPEGYDHPLGGGREVWFGFHQSVRPAMWKMMLNIDVSATAFYKAQPVIQFMCEVLDIHNIDEQPRPLTDSHRVKFTKEIKGLKVEVTHCGTMRRKYRVCNVTRRPASHQTFPLQLENGQTVERTVAQYFREKYTLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLVRSANYETDPFVQEFQFKVRDEMAHVTGRVLPAPMLQYGGRNRTVATPSHGVWDMRGKQFHTGVEIKMWAIACFATQRQCREEILKGFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVIKTSPQTLSNLCLKINVKLGGINNILVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPSRYCATVRVQRPRQEIIQDLASMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFRQVLYYELLAIREACISLEKDYQPGITYIVVQKRHHTRLFCADRTERVGRSGNIPAGTTVDTDITHPYEFDFYLCSHAGIQGTSRPSHYHVLWDDNCFTADELQLLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHVSGQSNGRDPQALAKAVQIHQDTLRTMYFA"
     misc_feature    468..752
                     /gene="AGO3"
                     /note="N-terminal domain of argonaute; Region: ArgoN;
                     pfam16486"
                     /db_xref="CDD:374571"
     misc_feature    780..932
                     /gene="AGO3"
                     /note="Argonaute linker 1 domain; Region: ArgoL1;
                     pfam08699"
                     /db_xref="CDD:370073"
     misc_feature    933..1295
                     /gene="AGO3"
                     /note="PAZ domain, argonaute_like subfamily. Argonaute is
                     part of the RNA-induced silencing complex (RISC), and is
                     an endonuclease that plays a key role in the RNA
                     interference pathway. The PAZ domain has been named after
                     the proteins Piwi,Argonaut, and Zwille; Region:
                     PAZ_argonaute_like; cd02846"
                     /db_xref="CDD:239212"
     misc_feature    order(1089..1091,1134..1136,1176..1178,1188..1190,
                     1242..1244,1263..1265,1269..1271)
                     /gene="AGO3"
                     /note="nucleic acid-binding interface [nucleotide
                     binding]; other site"
                     /db_xref="CDD:239212"
     misc_feature    1428..2705
                     /gene="AGO3"
                     /note="PIWI domain, Argonaute-like subfamily. Argonaute is
                     the central component of the RNA-induced silencing complex
                     (RISC) and related complexes. The PIWI domain is the
                     C-terminal portion of Argonaute and consists of two
                     subdomains, one of which provides the...; Region:
                     Piwi_ago-like; cd04657"
                     /db_xref="CDD:240015"
     misc_feature    order(1839..1841,1851..1853,1887..1898,1905..1907,
                     1929..1931,1938..1940,1950..1952,1962..1964)
                     /gene="AGO3"
                     /note="5' RNA guide strand anchoring site; other site"
                     /db_xref="CDD:240015"
     misc_feature    order(2043..2045,2049..2051,2259..2261,2673..2675)
                     /gene="AGO3"
                     /note="active site"
                     /db_xref="CDD:240015"
ORIGIN      
gccgcagtcgtggaggggccgcgggagcggacgcggcggcgggcggcgcgccttcccacggggctgtcccggccgcctcccgcttcgccctccgcccgccgggtcgcgcgctgcctccccgcggcggccgtccccgaggagcggtcatcgccgcccgccggcaggcccggcgtccgcgtcgcccctgcgctgcctccgcgcccccagcggcgggcgcccttctcggccgaagcacccccccagctccatgaatggaaatcggctccgcaggacccgttggggcccagcccctactcatggtgcccagaagacctggctatggcaccatgggcaaacccattaaattgctggctaactgttttcaagttgaaatcccaaagattgatgtctacctctatgaggtagacattaaaccagacaagtgtcctaggagagtgaacagggaggtggttgactcaatggttcagcattttaaagtgactatatttggggaccgtagaccagtttatgatggaaaaagaagcctttacacagccaatccacttcctgtggcaactactggggtagatttagatgttactttacctggggaaggtggaaaagatcgaccattcaaggtatcaattaaatttgtctctcgggtgagttggcacctactacatgaagtactgacaggacggaccttgcctgagccactggaattagacaagccaatcagcactaatcctgtccatgctgttgatgtggtgctacgacatctgccctccatgaaatatacacctgtggggcgttcctttttctcagctccagaaggatatgaccaccccctgggagggggcagggaagtatggtttggattccatcaatctgttcgacctgccatgtggaaaatgatgcttaatattgatgtttctgccactgccttctacaaagcacaacctgtaattcagttcatgtgtgaagttcttgacattcataatattgatgagcaaccaagacctctgactgattctcatcgggtaaaattcaccaaagagataaaaggtctgaaggttgaagtgactcattgtggaacaatgagacggaaataccgtgtttgtaatgtaacaagaaggcctgccagtcatcaaacctttcctttacagttggaaaatgggcaaactgtggagagaacagtagcacagtatttcagagaaaagtatactcttcagctcaagtacccacaccttccttgtctgcaagtggggcaggaacagaaacatacctacctgccgctagaagtctgtaatatcgtggcagggcaacgatgtatcaagaagctaacggacaatcagacttccactatgatcaaagcaacagcaagatctgcaccagatagacaagaggaaattagcagattggtaagaagtgcaaattatgaaacagatccatttgttcaagagtttcaatttaaagttcgggatgaaatggcccatgtaaccggacgtgtacttccagcacctatgctgcagtatggaggacggaatcggacagtagcaacaccaagccatggagtatgggacatgcgggggaagcagtttcacacaggagttgagataaaaatgtgggctatagcttgctttgccacacagaggcagtgcagagaagaaatactgaagggtttcacagaccagctgcggaagatttccaaggatgcagggatgcccatccagggccagccttgcttctgcaaatatgcacagggggcagacagcgtggagcccatgttccggcatctcaaaaacacctactctgggctgcagctcattattgtcatccttccaggaaagacgccagtgtatgcggaagtgaaacgtgtaggagatacacttctgggtatggccacacagtgtgtccaagtgaagaatgtaataaaaacatcccctcaaactctctcaaacctgtgcctaaagataaatgttaaactcggagggatcaataatattcttgtacctcatcaaagaccttctgtgttccagcaaccagtgatctttttgggagcagacgtcactcatccaccagctggtgatgggaagaaaccttctattgctgctgttgtaggtagtatggatgcccacccaagcagatactgtgccacagtaagagttcagagaccccgacaggagatcatccaggacttggcctccatggttcgagaacttctcattcagttttataagtcaactcggttcaaacctactcgtatcatcttttatcgggatggtgtttcagagggacagtttaggcaggtattatattatgaactactagcaattcgagaagcctgcatcagtttggagaaagactatcaacctggaataacctacattgtagttcagaagagacatcacactcgattattttgtgctgataggacagaaagggttggaagaagtggcaatatcccagctggaacaacagtcgatacggatatcacacacccgtatgagtttgatttttacctctgtagccatgctggaatacagggtaccagccgtccttcacactatcatgttttatgggatgataactgctttactgcagatgaacttcagctgctaacttaccagctctgccacacttatgtgcgctgtacacgatctgtttctatccctgcaccagcgtattatgctcacctggtggcattcagagccagatatcatctcgtggacaaagaacatgacagtgctgaaggaagtcatgtttcaggacagagcaacgggcgagatccacaagctctcgccaaggctgtacagattcaccaagataccttacgcacaatgtactttgcttaaaaagtccaagaatattctgtgagaggaagaactgaaagatgcatcgacatacagcatatgtttccagttgagtggggatgcctccagccatacagcaaccaacactgtgtggggaccagggtctgatttttatgttgatacaaggaagattgtttacttcatcaaggaacacagcaccattatgcaatatgaaaccagccaactgcttttttgtgcggtctccttaggaagtatcgccattgttttgttttcactttcttgtagtctaacccttttaatgcctttacctcaagttgcttggcagcacaactatctttgcaaaaaaagtaaagaaaaagtaaatgacagtttaaaaaaaaaaaaacacacctacatgaataatcagtgattgttcacgattatgtgtgcaaaaaaattaatgtgcattcgtgtattcttgtaaaaagtatctgtgtatattttaaatatatacatgtatacttcatatgcatatatatctggatctacattgctaatagatatatatgtctgtgcgtgtattttatagttcattccattggggaactttcccttttatcatcttcccaccaccactttgatttttctctctacctccctcgcaacctcatcatctacattttttttcttgatgctaccagtgacattcagatgttcatgtatttagttcatttggatataaagcatggcaaaactagatttttatttttattttgcacatcctactcctgtctcttgtctcatacacaattctaagtcctcaactcttgatactgctttcttaagaaacaaaattattatatatatatataactgtgtatatatatacatatatatatatatatatactgtttctgtgagagtactgtctgccccctcctgctccgaacttacatttgccatttgtgcaatgtgtacataagcagtagcaaccttaaactattctttttctttagtttgttaaagctgctataaatataaaaccttgtcagaagttgtaactcaaaaatttccctctataagtgatgtgtatcctaaaaccttctgtttctatgggttatacatgaaaatcccttatagcttttataaagggcaaatattttaaatgattggaagtctttagggttgaggcctctgaaattgggtggagagagagaaggggttattgaggatttttttaattttaattttttttgctagtttacttgctgcctctcataccttaatgtgattttcatatatatatatttttatatatatgtgtgtatatataaacatatatgtatgtgttttgaagtacagcttccttttcttttatatttattagaatagtgctttaataattagagaactgtattggcaacatcttttatagaaatgtaatcatgtttattttaagaactgacaacttgtttttgctgtcttttagtgcaataagcagttttaaaggaaagctgtgtctgtttgatatctttaccacagatagtgggagaaacaggcacctccataattttaaaagggcaaagtaatacagccttaatttcagaaggaaagttttttgtaatttttcaagtttaaagcatgtcttttaaaaatcaaaatgaaaatgaaggaagttgaatttcctacgtgagtctgacattgaatattagagacagagatgagctttgatttaggaaatgatggtgaataggggcacctggctgactcagtcactagagcatgtgactcttgatctttgatttgtgagtccaagccgcatgttgggcatggagcctacttacaaaaatagcttaagatttagaagacatttaattctttgaaaatagatcgtgtttattgaacaatcatactggttaggtgcccattttcatttactaaaattaatcaagaaaatgtaaaatgatactttaaaaacatttttttgccaatttatcagcagtgtaactttccttttaaaattagggttatgatggcaaaggaagttaggactttgatcattttaaataagttaaatcactgaaatgtggaaaaagttttataaaacttctgttttattggtttcattcactttaagatattaaaaagtattatagagctgtcaaaatcgagttcatcagtaacatggaatcaggggagctttgcact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//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]