GGRNA ver.2 Home | Help | Advanced search    Previous release (v1)

2024-04-20 11:40:37, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_025408207            2083 bp    mRNA    linear   INV 03-JUL-2018
DEFINITION  PREDICTED: Camponotus floridanus flocculation protein FLO11
            (LOC105255116), transcript variant X2, mRNA.
ACCESSION   XM_025408207
VERSION     XM_025408207.1
DBLINK      BioProject: PRJNA476946
KEYWORDS    RefSeq.
SOURCE      Camponotus floridanus (Florida carpenter ant)
  ORGANISM  Camponotus floridanus
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
            Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita;
            Aculeata; Formicoidea; Formicidae; Formicinae; Camponotus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_020229325.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Camponotus floridanus Annotation
                                           Release 102
            Annotation Version          :: 102
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.1
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2083
                     /organism="Camponotus floridanus"
                     /mol_type="mRNA"
                     /strain="SB8"
                     /db_xref="taxon:104421"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="whole body"
                     /dev_stage="worker"
     gene            1..2083
                     /gene="LOC105255116"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 2 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:105255116"
     CDS             115..1449
                     /gene="LOC105255116"
                     /codon_start=1
                     /product="flocculation protein FLO11"
                     /protein_id="XP_025263992.1"
                     /db_xref="GeneID:105255116"
                     /translation="
MNMTKHPLYETSTDSTENIITSTSIETDSTEDITTSTSIETDSTEDITTSTSIETDSTEDITSTSIETDSTEHITTSTSIETDSTEDTNDTKSSASTNSTDDDDTASFTFINFHPHISDVTSADNQAETLKVEFEELRRNDDNLHKFTEMAIFRNHYMFPTVPNTVLSKQKNTLKSVLNQKSSKTNEDIAISTKQKLEKKDHISKNKHCKKPQSLVLWRPLAPPIQDLEEKSRIYKLLMKHVFTRESRLIFNYKRERRSSLPFTPIPKLLAICPPPPESTTSELLNVIEKPNTSKSDINLDSQSSKTCIFTKQAKIKTPKDSTNESNSSTDDESYIDTEQSTHSATHTDDDIRNLELSDNEEETIEESPPECSECALILVVSLLFVALTLIVSFSITALFFAYVFPFDPLGLSLGQNLEHTDTFTSVIVEMEEKILMKPYKKRS"
     misc_feature    169..>456
                     /gene="LOC105255116"
                     /note="amidase domain-containing protein; Region:
                     PRK08581"
                     /db_xref="CDD:236304"
ORIGIN      
taaggttatcgaatttgctaacacaaatcgacaagaaaatataatgatttaacaattccggaaaatcttgggagcatcttaatatcaacggttcacattttatcatccacattcatgaatatgacgaaacatccactgtatgaaacatccacggattcaacggaaaatataataacatccacatccatagaaacggattcaacggaagatataacaacatctacatccatagaaacagattcaacggaagatataacaacatccacatccatagaaacggattcaacggaagatataacatccacatccatagaaacggattcaacggaacatataacaacatccacatccatagaaacggattcaacggaagatactaatgatacgaaatcatccgcatctacaaattcaacagatgatgacgacactgcatcattcacattcataaatttccatccacacatttccgatgtgacatctgcagataatcaagcagaaactttaaaagtagagtttgaagaacttagaagaaatgatgacaacttacataaattcactgaaatggcaatttttagaaatcattatatgtttccaactgtgccgaacactgttctgagcaagcagaagaatacattaaaatctgtccttaatcagaaatcttccaaaacaaacgaggatattgcgatttctacgaaacaaaagcttgaaaaaaaagatcatataagtaaaaacaaacattgcaagaagcctcaatctcttgtcttatggagaccgcttgctccaccgattcaggatttggaggaaaaatcgagaatctacaaattgttgatgaaacatgtattcacaagagaatcacgtttaatattcaattataaacgcgaaagaagaagcagcttaccgtttacacctattccgaaactgttggccatatgtcctcctccaccggaatcaaccacttcagaattattaaatgtaatcgagaaacctaatacatcaaagtctgacattaacctagactctcaatcttctaaaacatgtatttttacgaaacaagcaaaaataaaaacgccaaaagattctacgaacgagagcaatagctctacggatgatgaatcgtatatcgatacagagcaaagtacgcattcagcaacacatactgatgatgatataagaaatcttgagttatcagataatgaagaagagactatcgaggaatcgcctcctgagtgttctgagtgtgcactaatcctggtcgtatcacttttgtttgttgcactaaccctgatcgtatcattttcgattactgcactattttttgcgtacgtatttccgtttgatcctcttgggctttctctaggtcagaatcttgagcacactgatacttttacctctgttattgtcgaaatggaagaaaagatactgatgaaaccatacaagaaaagatcatgatgaaaccatacaagctttagctgaatatcttcagcaagatacacctcttttaaaagtagtagctctcatcaataatgcaagcgtcgataaatcatatacaatagacatcataagaaacaaatttgccggaagaagcggaaacgaacgtgtaagtttgtattcgagctttactgttttagaaaatttgagcctaaaaagtttcaaagtggtcatagattttgtgaacatgtgtcaaagagtatatccacgtgatcagcaagttaccatattagcggattttaaaattgatgacgatttgacacatatagacttaaatcgagctataaacacacttaaagaaactttaattaaagcaaatattaatttcaaaattcttctttacaaacctttaaatgaagaagctttagaaaaatacattcaaaatatggcagaaaatattggagaatcattctctcaaattcagatcgatgatattaaacgagatttgatagaaggcaattgcaaaaaagcctatggtcattgctatggttagtagaaaataaaaatcgtacattgctttcaagaagataaaactgcaaaaattattgtgtattgtgtctgataaatgtccaataaaaaacgatattttttcgta
//

by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]