2024-04-24 18:49:16, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_025171171 2544 bp mRNA linear VRT 24-MAY-2018 DEFINITION PREDICTED: Python bivittatus protein argonaute-1 (LOC103066542), transcript variant X1, mRNA. ACCESSION XM_025171171 VERSION XM_025171171.1 DBLINK BioProject: PRJNA238085 KEYWORDS RefSeq. SOURCE Python bivittatus (Burmese python) ORGANISM Python bivittatus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Serpentes; Henophidia; Pythonidae; Python. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_006534797.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Python bivittatus Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2544 /organism="Python bivittatus" /mol_type="mRNA" /db_xref="taxon:176946" /chromosome="Unknown" /sex="female" /tissue_type="liver" /country="USA: Texas" gene 1..2544 /gene="LOC103066542" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns" /db_xref="GeneID:103066542" CDS 99..2447 /gene="LOC103066542" /codon_start=1 /product="protein argonaute-1" /protein_id="XP_025026939.1" /db_xref="GeneID:103066542" /translation="
MVQHFKPQIFGDRKPVYDGKKNIYTVTALPIGNERVDFEVTIPGEGKDRIFKVSIKWMAIVSWRMLHEALVSGQIPVPLESVQALDVAMRHLASMRYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWKMMLNIDVSATAFYKAQPVIEFMCEVLDIRNIDEQPKPLTDSQRVRFTKEIKGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLESGQTVECTVAQYFKQKYNLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLMKNASYNLDPYIQEFGIKVKDDMTEVTGRVLPAPILQYGGRNRAIATPNQGVWDMRGKQFYNGIEIKVWAIACFAPQKQCREEVLKNFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINVKLGGINNILVPHQRSAVFQQPVIFLGADVTHPPAGDGKKPSITAVVGSMDAHPSRYCATVRVQRPRQEIIEDLSYMVRELLIQFYKSTRFKPTRIIFYRDGVPEGQLPQILHYELLAIRDACIKLEKDYQPGITYIVVQKRHHTRLFCADKNERIGKSGNIPAGTTVDTNITHPFEFDFYLCSHAGIQGTSRPSHYYVLWDDNRFTADELQILTYQLCHTYVRCTRSVSIPAPAYYARLVAFRARYHLVDKEHDSGEGSHISGQSNGRDPQALAKAVQVHQDTLRTMYFA"
misc_feature 141..365 /gene="LOC103066542" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 393..545 /gene="LOC103066542" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 546..908 /gene="LOC103066542" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(702..704,747..749,789..791,801..803,855..857, 876..878,882..884) /gene="LOC103066542" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1041..2318 /gene="LOC103066542" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1452..1454,1464..1466,1500..1511,1518..1520, 1542..1544,1551..1553,1563..1565,1575..1577) /gene="LOC103066542" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(1656..1658,1662..1664,1872..1874,2286..2288) /gene="LOC103066542" /note="active site" /db_xref="CDD:240015" ORIGIN
gtagacattcccaaaattgatgtctatcactatgaagttgacatcaagccagacaagtgtccccgcagagtcaacaggtaagggaggttgtggaatatatggtgcaacacttcaaacctcagatctttggagaccggaagccggtgtacgatggaaagaagaacatctatactgtcactgctctgcctattggaaatgaaagggttgactttgaggtgacaattccaggggaaggcaaagaccggatcttcaaggtctctattaagtggatggccattgtaagctggcggatgctccatgaagctctggtgagcgggcagatccctgttcctttggaatctgtccaggcccttgatgttgctatgagacacctggcttccatgaggtacaccccagtggggcgttccttcttctctccccctgaaggatactatcaccccctgggaggaggtcgggaggtatggtttggcttccatcagtctgtcagacctgccatgtggaagatgatgctcaatatagatgtgtctgcaacagcgttttacaaggcccagcctgtgattgaattcatgtgtgaagtcctggacatccggaacattgatgagcagccaaaacctctgactgactctcagagggttcggttcacaaaggaaatcaagggtttgaaagtggaggttactcactgtggacaaatgaagaggaaataccgtgtgtgtaatgttactcggcgtccagctagtcaccaaacgttccccttgcagctggagagcggacagactgtggaatgcaccgtagcacaatacttcaaacagaagtacaacctgcagttgaagtatccccacctgccctgtcttcaggttggccaggagcagaaacacacctatctgcctctggaggtgtgcaacattgtggctggccagcggtgcatcaaaaaattgacggacaatcagacgtctaccatgatcaaagctacagcacgatctgctcctgacaggcaagaagagattagccggttgatgaaaaatgccagttacaacctggacccatacatacaggagtttggcataaaagtgaaagatgacatgacagaagtgactgggcgggtcctgccagccccgattttacaatatggaggccggaatcgtgccattgccacacccaaccagggggtctgggatatgagagggaagcagttctacaatggcattgagatcaaggtgtgggccatcgcctgttttgccccccagaagcagtgcagagaagaagtgctgaagaacttcacagaccagctgcgcaagatttctaaggacgcagggatgccaatccagggtcagccttgcttctgtaaatacgcacaaggtgctgacagtgtggagcccatgttccgacaccttaaaaacacctattcgggactccaactcatcatagtcatcctgccagggaagacaccggtgtatgcggaggtgaagcgtgtaggggacacccttctgggcatggccactcagtgtgtgcaggtcaaaaatgtggtgaagacctcacctcagactctttccaacctttgtctcaagatcaacgttaaacttggaggaattaacaatatcttggtgccccatcagcgttctgccgtttttcagcagccagttatattcctgggagctgatgtgactcatcctccagccggtgatggaaagaagccttccataacagctgtggtgggcagcatggatgcccacccaagccgctactgtgccacggttcgggtacagcggccacgccaggaaattattgaagacctttcctatatggttcgagagctgctcatccagttctacaagtccacgcgcttcaagccaacacggattatcttctaccgggatggtgtgcctgagggacaactgccacagatccttcactatgaacttctggccattcgggacgcctgcatcaaactggagaaagactaccagccgggcatcacctacattgtggtccagaaaagacaccacactcgcctcttctgtgcagacaagaatgagaggattggcaaaagtgggaacatcccagcaggaactacagtcgatacgaacattactcacccttttgagtttgacttctacctgtgcagccatgctggcattcagggtacgagcaggccttcccattactacgtgctttgggacgataaccggtttacagcagatgagctccaaatcctcacctaccagctttgtcacacatacgtccgttgtacccgctctgtttctatcccagcaccagcatactatgcccgtttggtggccttccgggcacgatatcaccttgtagacaaagagcatgacagcggagaaggcagccacatctctggccagagcaacggccgagatcctcaggctctcgccaaggctgtgcaagttcatcaggacactttacgcaccatgtactttgcttgaaagcccaacatttttacctcactccagaaagctttccgatttgtaggagccatacaaaaaaagaaagaaaaagaaagaaagaaagaaagaaagaaag
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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