2024-05-17 15:51:20, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_024473296 3489 bp mRNA linear INV 06-MAY-2020 DEFINITION Plasmodium falciparum 3D7 liver stage antigen 1 (PF3D7_1036400), partial mRNA. ACCESSION XM_024473296 VERSION XM_024473296.1 DBLINK BioProject: PRJNA148 BioSample: SAMN00102897 KEYWORDS RefSeq. SOURCE Plasmodium falciparum 3D7 ORGANISM Plasmodium falciparum 3D7 Eukaryota; Sar; Alveolata; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania). REFERENCE 1 AUTHORS Gardner,M.J., Hall,N., Fung,E., White,O., Berriman,M., Hyman,R.W., Carlton,J.M., Pain,A., Nelson,K.E., Bowman,S., Paulsen,I.T., James,K., Eisen,J.A., Rutherford,K., Salzberg,S.L., Craig,A., Kyes,S., Chan,M.S., Nene,V., Shallom,S.J., Suh,B., Peterson,J., Angiuoli,S., Pertea,M., Allen,J., Selengut,J., Haft,D., Mather,M.W., Vaidya,A.B., Martin,D.M., Fairlamb,A.H., Fraunholz,M.J., Roos,D.S., Ralph,S.A., McFadden,G.I., Cummings,L.M., Subramanian,G.M., Mungall,C., Venter,J.C., Carucci,D.J., Hoffman,S.L., Newbold,C., Davis,R.W., Fraser,C.M. and Barrell,B. TITLE Genome sequence of the human malaria parasite Plasmodium falciparum JOURNAL Nature 419 (6906), 498-511 (2002) PUBMED 12368864 REFERENCE 2 (bases 1 to 3489) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (06-MAY-2020) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 CONSRTM Pathogen Informatics TITLE Direct Submission JOURNAL Submitted (28-JUN-2019) WTSI, Pathogen Informatics, Wellcome Trust Sanger Institute, CB10 1SA, United Kingdom REFERENCE 4 AUTHORS Aslett,M., Brunk,B., Gardner,M. and Berriman,M. CONSRTM P. falciparum Genome Sequencing Consortium TITLE Direct Submission JOURNAL Submitted (30-JUL-2009) Wellcome Trust Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SA, UK REFERENCE 5 AUTHORS Gardner,M.J. TITLE Direct Submission JOURNAL Submitted (13-SEP-2002) The Institute for Genomic Research, 9715 Medical Center Dr., Rockville, MD 20850, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NC_037281). COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..3489 /organism="Plasmodium falciparum 3D7" /mol_type="mRNA" /isolate="3D7" /db_xref="taxon:36329" /chromosome="10" gene <1..>3489 /locus_tag="PF3D7_1036400" /db_xref="GeneID:810513" CDS 1..3489 /locus_tag="PF3D7_1036400" /codon_start=1 /product="liver stage antigen 1" /protein_id="XP_024329106.1" /db_xref="EnsemblGenomes-Gn:PF3D7_1036400" /db_xref="GeneID:810513" /db_xref="GOA:A0A143ZZD7" /db_xref="InterPro:IPR039959" /db_xref="UniProtKB/TrEMBL:A0A143ZZD7" /translation="
MKHILYISFYFILVNLLIFHINGKIIKNSEKDEIIKSNLRSGSSNSRNRINEEKHEKKHVLSHNSYEKTKNNENNKFFDKDKELTMSNVKNVSQTNFKSLLRNLGVSENIFLKENKLNKEGKLIEHIINDDDDKKKYIKGQDENRQEDLEQERLAKEKLQGQQSDLEQERLAKEKLQEQQSDLEQERLAKEKLQEQQSDLEQDRLAKEKLQEQQSDLEQERRAKEKLQEQQSDLERTKTSKEKLHEQQSDLEQERRAKEKLQEQQSDLEQERLAKEKLQEQQSDLEQERLAKEKLQEQQSDLEQERLAKEKLQEQQSDLEQERLAKEKLQEQQSDLEQERLAKEKLQEQQSDLEQDRLAKEKLQEQQSDLEQERLAKEKLQEQQSDLEQERRAKEKLQEQQSDLEQERRAKEKLQEQQSDLEQERRAKEKLQEQQSDLEQERRAKEKLQEQQSDLEQERLAKEKLQEQQSDLEQERRAKEKLQEQQSDLEQERLAKEKLQEQQSDLEQERRAKEKLQEQQSDLEQERRAKEKLQEQQSDLEQDRLAKEKLQEQQSDLEQERRAKEKLQEQQSDLERTKASTETLHEQQSDLEQERLAKEKLQEQQSDLEQERLAKEKLQEQQSDLERTKASTETLREQQSDLEQEKLAKEKLQGQQSDLEQERLAKEKLQGQQSDLEQERLAKEKLQGQQSDLEQERLAKEKLQGQQSDLEQERLAKEKLQERQSDLEQERLAKEKLQEQQSDLEQERLAKEKLQEQQSDLEQDRLAKEKLQEQQSDLEQERLAKEKLQGQHSDLERTKASKETLQEQQSDLEQERLAKEKLQEQQSDLEQERRAKEKLQEQQSDLEQERRAKEKLQEQQSDLEQERRAKEKLQEQQRDLEQRKADTKKNLERKKEHGDVLAEDLYGRLEIPAIELPSENERGYYIPHQSSLPQDNRGNSRDSKEISIIENTNRESITTNVEGRRDIHKGHLEEKKDGSIKPEQKEDKSADIQNHTLETVNISDVNDFQISKYEDEISAEYDDSLIDEEEDDEDLDEFKPIVQYDNFQDEENIGIYKELEDLIEKNENLDDLDEGIEKSSEELSEEKIKKGKKYEKTKDNNFKPNDKSLYDEHIKKYKNDKQVNKEKEKFIKSLFHIFDGDNEILQIVDELSEDITKYFMKL"
misc_feature 598..2283 /locus_tag="PF3D7_1036400" /note="DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]; Region: SbcC; COG0419" /db_xref="CDD:223496" misc_feature <1195..3438 /locus_tag="PF3D7_1036400" /note="MAEBL; Provisional; Region: PTZ00121" /db_xref="CDD:173412" ORIGIN
atgaaacatattttgtacatatcattttactttatccttgttaatttattgatatttcatataaatggaaagataataaagaattctgaaaaagatgaaatcataaaatctaacttgagaagtggttcttcaaattctaggaatcgaataaatgaggaaaagcacgagaagaaacacgttttatctcataattcatatgagaaaactaaaaataatgaaaataataaatttttcgataaggataaagagttaacgatgtctaatgtaaaaaatgtgtcacaaacaaatttcaaaagtcttttaagaaatcttggtgtttcagagaatatattccttaaagaaaataaattaaataaggaagggaaattaattgaacacataataaatgatgatgacgataaaaaaaaatatattaaagggcaagacgaaaacagacaagaagatctagaacaagagagacttgctaaagaaaagttacaggggcaacaaagcgatttagaacaagagagacttgctaaagaaaagttgcaagaacaacaaagcgatttagaacaagagagacttgctaaagaaaagttgcaagaacaacaaagcgatttagaacaagatagacttgctaaagaaaagttacaagagcaacaaagcgatttagaacaagagagacgtgctaaagaaaagttgcaagaacaacaaagcgatttagaacgaacgaagacttctaaagaaaagttacatgagcagcaaagcgatttagaacaagagagacgtgctaaagaaaagttgcaagaacaacaaagcgatttagaacaagagagacttgctaaagaaaagttgcaagagcaacaaagcgatttagaacaagagagacttgctaaagaaaagttgcaagaacaacaaagcgatttagaacaagagagacttgctaaagaaaagttacaagagcagcaaagcgatttagaacaagagagacttgctaaagaaaagttgcaagaacaacaaagcgatttagaacaagagagacttgctaaagaaaagttgcaagaacaacaaagcgatttagaacaagatagacttgctaaagaaaagttacaagagcaacaaagcgatttagaacaagagagacttgctaaagaaaagttgcaagaacaacaaagcgatttagaacaagagagacgtgctaaagaaaagttgcaagaacaacaaagcgatttagaacaagagagacgtgctaaagaaaagttgcaagaacaacaaagcgatttagaacaagagagacgtgctaaagaaaagttgcaagaacaacaaagcgatttagaacaagagagacgtgctaaagaaaagttgcaagaacaacaaagcgatttagaacaagagagacttgctaaagaaaagttgcaagaacaacaaagcgatttagaacaagagagacgtgctaaagaaaagttgcaagaacaacaaagcgatttagaacaagagagacttgctaaagaaaagttgcaagaacaacaaagcgatttagaacaagagagacgtgctaaagaaaagttgcaagaacaacaaagcgatttagaacaagagagacgtgctaaagaaaagttgcaagaacaacaaagcgatttagaacaagatagacttgctaaagaaaagttacaagagcaacaaagcgatttagaacaagagagacgtgctaaagaaaagttgcaagaacaacaaagcgatttagaacgaacgaaggcatctacagaaacgttgcatgagcagcaaagcgatctagaacaagagagacttgctaaagaaaagttacaagagcagcaaagcgatttagaacaagagagacttgctaaagaaaagttacaagagcaacaaagcgatttagaacgaacgaaggcatctacagaaacgttgcgtgagcagcaaagcgatctagaacaagagaaactagctaaagaaaagttacaggggcaacaaagcgatctagaacaagagagactagctaaagaaaagttacaggggcaacaaagcgatctagaacaagagagactagctaaagaaaagttacaggggcaacaaagcgatctagaacaagagagactagctaaagaaaagttacaggggcaacaaagcgatttagaacaagagagacttgctaaagaaaagttgcaagagcgacaaagcgatttagaacaagagagacttgctaaagaaaagttgcaagaacaacaaagcgatttagaacaagagagactagctaaagaaaagttgcaagaacaacaaagcgatttagaacaagacagacttgctaaagaaaagttgcaagaacaacaaagcgatttagaacaagagagactagctaaggaaaagttacaggggcagcatagcgatttagaacgaacgaaggcatctaaagaaacgttgcaagaacaacaaagcgatttagaacaagagagacttgctaaagaaaagttgcaagaacaacaaagcgatttagaacaagagagacgtgctaaagaaaagttgcaagaacaacaaagcgatttagaacaagagagacgtgctaaagaaaagttgcaagaacaacaaagcgatttagaacaagagagacgtgctaaagaaaagttgcaagagcagcaaagagatttagaacaaaggaaggctgatacgaaaaaaaatttagaaagaaaaaaggaacatggagatgtattagcagaggatttatatggtcgtttagaaataccagctatagaacttccatcagaaaatgaacgtggatattatataccacatcaatcttctttacctcaggacaacagagggaatagtagagattcgaaggaaatatctataatagaaaatacaaatagagaatctattacaacaaatgttgaaggacgaagggatatacataaaggacatcttgaagaaaagaaagatggttcaataaaaccagaacaaaaagaagataaatctgctgacatacaaaatcatacattagagacagtaaatatttctgatgttaatgattttcaaataagtaagtatgaggatgaaataagtgctgaatatgacgattcattaatagatgaagaagaagatgatgaagacttagacgaatttaagcctattgtgcaatatgacaatttccaagatgaagaaaacataggaatttataaagaactagaagatttgatagagaaaaatgaaaatttagatgatttagatgaaggaatagaaaaatcatcagaagaattatctgaagaaaaaataaaaaaaggaaagaaatatgaaaaaacaaaggataataattttaaaccaaatgataaaagtttgtatgatgagcatattaaaaaatataaaaatgataagcaggttaataaggaaaaggaaaaattcataaaatcattgtttcatatatttgacggagacaatgaaattttacagatcgtggatgagttatctgaagatataactaaatattttatgaaactataa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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