2024-05-02 20:26:28, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_024237521 3685 bp mRNA linear PRI 11-APR-2023 DEFINITION PREDICTED: Pongo abelii NLR family pyrin domain containing 12 (NLRP12), transcript variant X2, mRNA. ACCESSION XM_024237521 VERSION XM_024237521.2 DBLINK BioProject: PRJNA944618 KEYWORDS RefSeq. SOURCE Pongo abelii (Sumatran orangutan) ORGANISM Pongo abelii Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pongo. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_072004) annotated using gene prediction method: Gnomon, supported by mRNA evidence. Also see: Documentation of NCBI's Annotation Process On Mar 23, 2023 this sequence version replaced XM_024237521.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Updated annotation Annotation Name :: GCF_028885655.1-RS_2023_04 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 04/06/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3685 /organism="Pongo abelii" /mol_type="mRNA" /isolate="AG06213" /db_xref="taxon:9601" /chromosome="19" /sex="male" /tissue_type="fibroblast" gene 1..3685 /gene="NLRP12" /note="NLR family pyrin domain containing 12; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 1 long SRA read, 3 Proteins" /db_xref="GeneID:100449374" CDS 191..3376 /gene="NLRP12" /codon_start=1 /product="NACHT, LRR and PYD domains-containing protein 12 isoform X2" /protein_id="XP_024093289.2" /db_xref="GeneID:100449374" /translation="
MLRTAGRDGLCRLSTYLEELEAVELKKFKLYLGTATELGEGKIPWGRMEKAGPLEMAQLLITHFGPEEAWKLALSTFERMNRKDLWERGQREDLVRDTPPGGPSSLGNQSTCLLEVSLVTPRKDPQETYRDYVRRKFRLMEDRNARLGECVNLSHRYTRLLLVKEHSNPMQAQQQLLDTGRGHARTVGHQASPIKIETLFEPDEERPEPPCTVVMQGAAGIGKSMLAHKVMLDWADGKLFQGRFDYLFYINCREMNQSATECSMQDLISSCWPEPSAPLQELIRVPERLLFIIDGFDELKPSFHDPQGPWCLCWEEKPPTELLLNSLIRKKLLPELSLLITTRPTALEKLHRLLEHPRHVEILGFSEAERKEYFYKYFHNAEQAGQVFNYVRDNEPLFTMCFVPLVCWVVCTCLQQQLEGGGLLRQMSRTTTAVYMLYLLSLMQPKPGAPRLQPPPNQRGLCSLAADGLWNQKILFEEQDLRKHGLDGADVSAFLNMNIFQKDINCERYYSFIHLSFQEFFAAMYYILDEGERGAGPDQDVTKLLTEYAFSERSFLALTSRFLFGLLNEETRSHLEKSLCWEVSPHIKMDLLQWIQSKAQSDGSTLQQGSLEFFGCLYEIQEEEFIQQALSHFQVIVVSNIASKMEHMVSSFCLKHCRSAQVLHLYGTTYSADGEDRARCSAGVHTLLVQLPERTVLLDAYSEHLAAALCTNPNLIELSLYRNALGSRGVKLLCQGLRHPNCKLQNLRLKKCRISSSACEDLSAALIANKNLTRMDLSGNGVGFPGMTLLCEGLRHPRCRLQMIQLRKCQLESGACQEMASVLSTNPHLVELDLTGNALEDLGLRLLCQGLRHPVCRLRTLWLKICHLTAAACEELASTLSVNQSLRELDLSLNELGDLGVLLLCEGLRHPTCKLQTLRLGICRLGSAACEGLSAVLQANHNLRELDLSFNDLGDWGLWLLAKGLQHPACRLQKLWLDSCGLTAKACKTLYFTLGINQTLTDLYLTNNALGDTGVRLLCKRLSHPGCKLRVLWLFGMDLNKMTHSRLAALRVTKPYLDIGC"
misc_feature 227..466 /gene="NLRP12" /note="Pyrin death domain found in NALP proteins; Region: Pyrin_NALPs; cd08320" /db_xref="CDD:260032" misc_feature 575..790 /gene="NLRP12" /note="Fish-specific NACHT associated domain; Region: FISNA; pfam14484" /db_xref="CDD:433982" misc_feature 824..1333 /gene="NLRP12" /note="NACHT domain; Region: NACHT; pfam05729" /db_xref="CDD:428606" misc_feature 1565..1726 /gene="NLRP12" /note="NOD2 winged helix domain; Region: NOD2_WH; pfam17779" /db_xref="CDD:436037" misc_feature 1730..2074 /gene="NLRP12" /note="NLRC4 helical domain HD2; Region: NLRC4_HD2; pfam17776" /db_xref="CDD:436035" misc_feature 2333..2419 /gene="NLRP12" /note="leucine-rich repeat [structural motif]; Region: leucine-rich repeat" /db_xref="CDD:275380" misc_feature 2339..3295 /gene="NLRP12" /note="Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond...; Region: LRR_RI; cd00116" /db_xref="CDD:238064" misc_feature order(2342..2344,2348..2350,2357..2359,2363..2365, 2420..2422,2429..2431,2435..2437,2444..2446,2450..2452, 2504..2506,2513..2515,2519..2521,2528..2530,2591..2593, 2600..2602,2606..2608,2615..2617,2621..2623,2675..2677, 2684..2686,2690..2692,2699..2701,2705..2707,2762..2764, 2771..2773,2777..2779,2786..2788,2792..2794,2846..2848, 2855..2857,2861..2863,2870..2872,2876..2878,2933..2935, 2942..2944,2948..2950,2957..2959,2963..2965,3017..3019, 3026..3028,3032..3034,3041..3043,3047..3049,3104..3106, 3113..3115,3119..3121,3128..3130,3134..3136,3188..3190, 3197..3199,3203..3205,3212..3214,3218..3220,3275..3277, 3284..3286,3290..3292) /gene="NLRP12" /note="Leucine-rich repeats [active]" /db_xref="CDD:238064" misc_feature 2420..2503 /gene="NLRP12" /note="leucine-rich repeat [structural motif]; Region: leucine-rich repeat" /db_xref="CDD:275380" misc_feature order(2438..2443,2612..2614,2783..2785,2867..2869, 3038..3040,3116..3118,3122..3124,3200..3202,3287..3289) /gene="NLRP12" /note="Substrate binding site [chemical binding]; other site" /db_xref="CDD:238064" misc_feature 2504..2590 /gene="NLRP12" /note="leucine-rich repeat [structural motif]; Region: leucine-rich repeat" /db_xref="CDD:275380" misc_feature 2591..2674 /gene="NLRP12" /note="leucine-rich repeat [structural motif]; Region: leucine-rich repeat" /db_xref="CDD:275380" misc_feature 2675..2761 /gene="NLRP12" /note="leucine-rich repeat [structural motif]; Region: leucine-rich repeat" /db_xref="CDD:275380" misc_feature 2762..2845 /gene="NLRP12" /note="leucine-rich repeat [structural motif]; Region: leucine-rich repeat" /db_xref="CDD:275380" misc_feature 2846..2932 /gene="NLRP12" /note="leucine-rich repeat [structural motif]; Region: leucine-rich repeat" /db_xref="CDD:275380" misc_feature 2933..3016 /gene="NLRP12" /note="leucine-rich repeat [structural motif]; Region: leucine-rich repeat" /db_xref="CDD:275380" misc_feature 3104..3160 /gene="NLRP12" /note="leucine-rich repeat [structural motif]; Region: leucine-rich repeat" /db_xref="CDD:275380" misc_feature 3182..3274 /gene="NLRP12" /note="leucine-rich repeat [structural motif]; Region: leucine-rich repeat" /db_xref="CDD:275381" ORIGIN
tgaagagtgagaaagcattatttcagcaaaaggtctttcctccctcgctcactcctcaaaccactggctcagcctctccgcccgctgcctgtgaatgatgcaatggaaggtgtgctggggtcgccccgtgtcccgtgcataggaacatctcagcctccaggtcctctcctttggggctcacggcacccccatgctacgaaccgcaggcagggacggcctctgtcgcctgtccacctacttggaagaactcgaggctgtggaactgaagaagttcaagttatacctggggaccgcgacagagctgggagaaggcaagatcccctggggacgcatggagaaggccggtcccttggaaatggcccagctgctcatcacccactttgggccagaggaggcctggaagttggctctcagcacctttgagcggatgaacaggaaggacctgtgggagagaggacagagagaggacctggtgagggacaccccacctggtggcccgtcctcacttgggaaccagtcaacatgccttctggaagtctctcttgtcactccaagaaaagatccccaggaaacctacagggactacgtccgcaggaaattccggctcatggaagaccgcaatgcgcgcctaggggaatgtgtcaacctcagccaccggtacacccggctcctgctggtgaaggagcactcaaaccccatgcaggctcagcagcagcttctggacacaggccgtggacacgcgaggaccgtgggacaccaggctagccccatcaagatagagaccctctttgagccagatgaggagcgccccgagccaccgtgcaccgtggtcatgcaaggcgcggcagggataggcaagtccatgctggcacacaaggtgatgctggactgggcggacgggaagctcttccaaggcagatttgattatctcttctacatcaactgcagggagatgaaccagagtgccacggaatgcagcatgcaagacctcatctccagctgctggcccgagcccagtgcgcctctccaggagctcatccgagttcccgagcgcctccttttcatcatcgacggcttcgatgagctcaagccttctttccacgatcctcagggaccctggtgcctctgctgggaggagaaaccgcccacggagctgcttcttaacagcttaattcggaagaagctgctccctgagctatctttgctcatcaccacacggcccacggctttggagaagctccaccgtctgctggagcaccccaggcatgtggagatcctgggcttctctgaggcagaaaggaaggaatacttctacaagtatttccacaatgcagagcaggcgggccaagtcttcaattacgtgagggacaacgagcctctcttcactatgtgcttcgtccccctggtgtgctgggtggtgtgtacctgcctccagcagcagctggagggtggggggctgttgagacagatgtccaggaccaccactgcggtgtacatgctctacctgctgagtctgatgcaacccaagcccggggccccgcgcctccagcccccacccaaccagagaggactgtgctccttggccgcagatgggctctggaatcagaaaatcctatttgaggagcaggacctccggaagcacggcctagatggggcagacgtctctgctttcctcaacatgaacatcttccagaaggacatcaactgtgagaggtactacagcttcatccatttgagtttccaggaattctttgcagctatgtactatatcctggacgagggggaacgcggggcaggcccagaccaggacgtgaccaagctgttgaccgagtacgcgttttctgaaaggagcttcctggcactcaccagccgcttcctgtttggactcctgaacgaggagaccaggagccacctggagaagagtctctgctgggaggtctcgccacacatcaagatggacctgttgcagtggatccaaagcaaagctcagagcgacggctccaccctccagcagggctccttggagttcttcggctgcttgtacgagatccaggaggaggagtttatccagcaggccctgagccacttccaggtgatcgtggtcagcaacattgcctctaagatggagcacatggtctcctcgttctgtttgaagcactgcaggagcgcccaggtgctgcacttgtatggcaccacttacagcgcggacggggaagaccgggcgaggtgctctgcaggagtgcacacgctgttggtgcagctaccagagaggaccgttctgctggacgcctacagtgaacatctggcagcggccctgtgcaccaatccaaacctgatagagctgtctctgtaccgaaatgccctgggcagccggggggtgaagctgctctgtcaaggactcagacaccccaactgcaaacttcagaacctgaggctgaagaagtgccgcatctccagctcagcctgcgaggacctctctgcagctctcatagccaataagaatttaacaaggatggatctcagtggcaacggtgttggattcccaggcatgacgctgctgtgcgagggcctgcggcatccccgatgcaggctgcagatgattcagttgaggaagtgtcagctggagtccggggcttgtcaggaaatggcttctgtgctcagcaccaacccacatctggttgagttggacctgacaggaaatgcactggaggatttgggcctgaggttactgtgccagggactgaggcacccagtctgcagactacggactttgtggctgaagatctgccacctcactgctgctgcctgtgaagagctggcctcaactctcagtgtgaaccagagcctgagagagctggacctgagcctaaatgagctgggggacctcggggtgctgctgctgtgtgagggcctcaggcatcccacgtgcaagctccagaccctccggttgggcatatgccgattgggctctgccgcctgtgagggtctttctgcggtgctccaggccaatcacaacctccgggagctggacttgagtttcaacgacctgggagactggggcctgtggttgctggctaaggggctgcaacatcccgcctgtagactccagaaactgtggctggatagctgtggactcacagccaaggcttgtaagactctttacttcaccctggggatcaaccagaccttgaccgacctttatctgaccaacaacgccctaggggacacaggtgtccgactgctttgcaagcggctgagccatcctggctgcaaactccgagtcctctggttatttgggatggacctgaataaaatgacccacagtaggttggcagcgcttcgagtaacaaaaccttatttggacattggctgctgaatagtcctatctgctggctctcccctgagatctggacagaggaagatgggagggtgctcatcacccctacagcataatgatcatgctccttcctagagacaaactcatgcagattgagatcagaagtccctctgcttgggatcaaattaatgtttgacagagctggccaggcatggtggctcatgtctgtaatcccagcacttcgagaggccgaggcaggtggatcacgaggtcaggagtttgagatcagcctggccaagatggtgaaaccctgtctctactaaaaataaaaaaaaaaattagccgggc
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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