2024-04-27 06:36:23, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_024044169 942 bp mRNA linear PLN 15-FEB-2018 DEFINITION PREDICTED: Quercus suber laccase-14-like (LOC112011830), mRNA. ACCESSION XM_024044169 VERSION XM_024044169.1 DBLINK BioProject: PRJNA433227 KEYWORDS RefSeq; includes ab initio. SOURCE Quercus suber ORGANISM Quercus suber Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_019826308.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Quercus suber Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 44% of CDS bases ##RefSeq-Attributes-END## FEATURES Location/Qualifiers source 1..942 /organism="Quercus suber" /mol_type="mRNA" /isolate="HL8" /db_xref="taxon:58331" /chromosome="Unknown" /tissue_type="leaves" /country="Portugal:Montargil" gene 1..942 /gene="LOC112011830" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 55% coverage of the annotated genomic feature by RNAseq alignments" /db_xref="GeneID:112011830" CDS 1..942 /gene="LOC112011830" /codon_start=1 /product="laccase-14-like" /protein_id="XP_023899937.1" /db_xref="GeneID:112011830" /translation="
MASYMPTNISGIYTADFPDNPPSFFNFTEDDSPDDTTLSVQGTKVRMLNYNEEVEIVFQGTNLLDVSMDHPMHLHGYSFYVIGSGYGVFDIETDPKGYNFDDPPKLNTVTLPKNGWVAIRFKASNPGMNISGIYTADFPDNPPSFFNFTEDDSPDDTTLSVQGTKVRMLNYNEEVEIVFQGTNLLDVSMDHPMHLHGYSFYVIGSGYGVFDIETDPKGYNFDDPPKLNTVTLPKNGWVAIRFKASNPGVWLWHCHYERHLSWGMSSVFIVKNGGTSETSIREPPPYLPPCKDSFTSRLLQYENSDGNRLNKID"
misc_feature 46..384 /gene="LOC112011830" /note="Multicopper oxidase; Region: Cu-oxidase_2; pfam07731" /db_xref="CDD:400194" misc_feature 397..819 /gene="LOC112011830" /note="Cupredoxin superfamily; Region: Cupredoxin; cl19115" /db_xref="CDD:450256" ORIGIN
atggcatcatacatgccaacgaacataagtgggatttacaccgcagattttccagacaatccaccttcatttttcaacttcactgaagatgattctccggatgacacaactctgtctgtccaggggaccaaggtaaggatgctgaattataatgaagaggtggagatagtgtttcagggtactaatttgctagatgtatcgatggatcacccaatgcaccttcatgggtactccttctatgtgattggctcaggttatggggtctttgatattgagactgacccaaaaggctacaattttgatgatccacctaagttgaacactgttacactccctaagaatggatgggttgccataagattcaaagcaagtaatcctggtatgaacataagtgggatttacaccgcagattttccagacaatccaccttcatttttcaacttcactgaagatgattctccggatgacacaactctgtctgtccaggggaccaaggtaaggatgctgaattataatgaagaggtggagatagtgtttcagggtactaatttgctagatgtatcgatggatcacccaatgcaccttcatgggtactccttctatgtgattggctcaggttatggggtctttgatattgagactgacccaaaaggctacaattttgatgatccacctaagttgaacactgttacactccctaagaatggatgggttgccataagattcaaagcaagtaatcctggagtatggttatggcattgtcattatgaacgacatttaagttggggtatgagcagtgtctttatagtgaaaaatggtgggacatcggagacgagtatacgcgaacccccaccttacttgcctccttgtaaggattcatttaccagtaggctcctacaatacgagaactcagatgggaatagattgaataagattgattag
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@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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