LOCUS       XM_023976386            3239 bp    mRNA    linear   VRT 17-DEC-2024
DEFINITION  PREDICTED: Salvelinus sp. IW2-2015 protein argonaute-4
            (LOC111955983), transcript variant X5, mRNA.
ACCESSION   XM_023976386
VERSION     XM_023976386.2
DBLINK      BioProject: PRJNA433373
KEYWORDS    RefSeq.
SOURCE      Salvelinus sp. IW2-2015
  ORGANISM  Salvelinus sp. IW2-2015
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii;
            Salmoniformes; Salmonidae; Salmoninae; Salvelinus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_036870.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Dec 17, 2024 this sequence version replaced XM_023976386.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_002910315.2-RS_2024_12
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 12/13/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3239
                     /organism="Salvelinus sp. IW2-2015"
                     /mol_type="mRNA"
                     /db_xref="taxon:2691554"
                     /linkage_group="LG31"
     gene            1..3239
                     /gene="LOC111955983"
                     /note="protein argonaute-4; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1 long
                     SRA read, 14 Proteins"
                     /db_xref="GeneID:111955983"
     CDS             210..2846
                     /gene="LOC111955983"
                     /codon_start=1
                     /product="protein argonaute-4 isoform X5"
                     /protein_id="XP_023832154.1"
                     /db_xref="GeneID:111955983"
                     /translation="

MEALGPGPPAPTSLFQPPRRPGMGTVGKPIRLLANHFQVQIPKIDVYHYDIDIKPEKRPRRVNREVVDTMVRHFKMQIFGDRQPGYDGKRNMYTAHPLPIGRDRVDLEVTLPGEGKDQTFKVSLQWVSVVSLQMLLEALSGHNEVPEDSVQALEVITRHLPSMRYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWNMMLNIDVSATAFYRAQPVIEFMCEVLDIQNINEQTKPLTDSQRVKFTKEIRGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLENGQAMECTVAQYFKQKYSLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLVKSNSMVGGPDPYLKEFGIVVHNDMTEVTGRVLPAPMLQYGGRVSTDTGRDCGRGLSPQNKTVATPNQGVWDMRGKQFYAGIEIKVWAVACFAPQKQCREDLLKSFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFKHLKLSYVGLQLIVVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINAKLGGINNVLVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDGHPSRYCATVRVQTSRQDLSQEQLYSQEVIQDLTNMVRELLIQFYKSTRFKPTRIIYYRGGVSEGQMKQVAWPELIAIRKACISLEEDYRPGITYIVVQKRHHTRLFCSDKTERVGKSGNVPAGTTVDSTITHPSEFDFYLCSHAGIQGTSRPSHYHVLWDDNCFTADELQLLTYQLCHTYVRCTRSVSIPAPAYYARLWLPRPATTWWTKDHDSAEGSHVSGQSNGRDPLALAKAVQIHYDTQHTMYFA"

     misc_feature    291..677
                     /gene="LOC111955983"
                     /note="N-terminal domain of argonaute; Region: ArgoN;
                     pfam16486"
                     /db_xref="CDD:465134"
     misc_feature    708..860
                     /gene="LOC111955983"
                     /note="Argonaute linker 1 domain; Region: ArgoL1;
                     pfam08699"
                     /db_xref="CDD:462567"
     misc_feature    861..1223
                     /gene="LOC111955983"
                     /note="PAZ domain, argonaute_like subfamily. Argonaute is
                     part of the RNA-induced silencing complex (RISC), and is
                     an endonuclease that plays a key role in the RNA
                     interference pathway. The PAZ domain has been named after
                     the proteins Piwi,Argonaut, and Zwille; Region:
                     PAZ_argonaute_like; cd02846"
                     /db_xref="CDD:239212"
     misc_feature    order(1017..1019,1062..1064,1104..1106,1116..1118,
                     1170..1172,1191..1193,1197..1199)
                     /gene="LOC111955983"
                     /note="nucleic acid-binding interface [nucleotide
                     binding]; other site"
                     /db_xref="CDD:239212"
     misc_feature    1362..2690
                     /gene="LOC111955983"
                     /note="PIWI domain, Argonaute-like subfamily. Argonaute is
                     the central component of the RNA-induced silencing complex
                     (RISC) and related complexes. The PIWI domain is the
                     C-terminal portion of Argonaute and consists of two
                     subdomains, one of which provides the...; Region:
                     Piwi_ago-like; cd04657"
                     /db_xref="CDD:240015"
     misc_feature    order(1821..1823,1833..1835,1869..1880,1887..1889,
                     1911..1913,1920..1922,1932..1934,1944..1946)
                     /gene="LOC111955983"
                     /note="5' RNA guide strand anchoring site [active]"
                     /db_xref="CDD:240015"
     misc_feature    order(2025..2027,2031..2033,2271..2273,2685..2687)
                     /gene="LOC111955983"
                     /note="active site"
                     /db_xref="CDD:240015"
ORIGIN      

tagcacctcctagcgcatgctcatttccaaatctacaggatctgttttaaatcactcagaagacaacgcatccacaacactgctggacatttacgcattatattccctttcttaaattagcccccctcagcttcgcgataccgcccccaatttcagtgtcggtacggagccgccaggccgggacagagacggagagagagccctcggccatggaagcgctcggacccggcccgccggcccccacctccctcttccagcccccgcggaggcctggcatgggcaccgtggggaagcccatccgcctgctggccaaccacttccaggtgcagattcccaagattgatgtctatcactacgatatcgacatcaagcctgagaaacggccacggagggttaacagggaggtggtggacaccatggttcgccacttcaagatgcagatctttggtgatcggcaaccgggctacgacgggaagaggaacatgtacacggcccatccactacccatcgggagagacagggtggatctggaagtaactctgccgggggaggggaaagatcagacgttcaaggtgtctctgcagtgggtgtcggtggtgagcctgcagatgctcctggaggctctgtcaggccacaacgaggtccccgaggactcagttcaggccctggargtcatcacccgccacctgccttccatgaggtacactccagtggggcgctccttcttctcccctccggagggttactaccaccccctgggcggaggcagggaggtgtggttcggcttccatcagtcggtccggcctgccatgtggaacatgatgctcaacatcgatgtctccgccactgctttctaccgtgcccagcccgtgatcgagttcatgtgcgaggtgctcgacatccagaacatcaacgagcagaccaagccactcaccgactcccaacgcgtcaagttcaccaaggagatccgaggtctgaaagtcgaggtcacccactgtggtcagatgaagaggaagtatcgcgtgtgcaatgtcactcgccgccccgccagccaccaaacgttccccttacagctggagaatggccaggccatggagtgtacagtggctcagtacttcaagcagaagtacagcctacagctcaaatacccccacctgccctgcctacaagtggggcaggaacagaagcacacctacctacccctggaggtttgtaacattgtggccgggcagcgctgcatcaagaagctgacagacaaccagacttccaccatgatcaaagctacagcacgttctgcacccgacaggcaggaagagatcagccgactggtcaaaagcaacagcatggtgggtggtcctgacccttacctgaaggagttcggaatcgtggtgcacaacgacatgaccgaggtgacgggccgagtcctcccagcgcccatgctgcagtatgggggccgggttagtaccgacactgggcgggactgtggcaggggactctctccgcagaataagacagtggccacgcccaaccagggcgtgtgggacatgcgggggaagcagttctacgccgggatagagatcaaggtgtgggccgtggcctgcttcgccccacagaaacagtgcagagaggacctgctcaagagcttcacagaccaactgaggaagatctcgaaggatgccggtatgcccatccagggccagccgtgtttctgtaaatacgcccagggagcggacagtgtggaacccatgttcaaacacctcaagctgtcctatgtgggactgcagctcatcgtggtcatcctgcccggcaaaacccctgtctacgcggaggtgaagcgggtaggagacaccctcctgggcatggccactcagtgtgtccaggtgaagaacgtggtgaagacgtccccccagaccctctccaacctctgcctcaagatcaacgccaagctggggggcatcaacaacgtcctggtgccccatcagagaccctctgtgttccagcaacccgtcatcttcctgggggcagacgtcactcaccctccagccggcgacggcaagaagccctccatcgcggcggtggtgggcagcatggacggccaccccagccgctactgtgccacmgtgcgrgtgcagacgtcgcgccaggacctgtcccaggagcagctgtacagccaggaggtcatccaggacctgaccaacatggtgcgcgagctgctcatccagttctacaagtccacgcgcttcaagcccacacgcatcatctactaccgaggcggcgtgtccgagggccaaatgaaacaggtggcgtggccagagctgattgccatcaggaaggcctgtatcagcttagaggaggactaccgaccgggcatcacctacatcgtggttcagaaacgtcaccacacccgcctcttctgctcagacaagaccgagagggttggaaagagtggcaacgtcccagccggaaccacggtggacagcacaatcacccacccctctgagtttgacttctacctgtgcagccatgctgggatccagggcaccagccggccctcccactaccacgtcctgtgggacgacaactgcttcacggccgacgagctccagctgctcacctaccagctgtgccacacctacgtccgctgcacccgctctgtctccatccccgcgccagcctactacgcccggctgtggcttccgcgccccgctaccacctggtggacaaaagatcacgacagtgcggagggcagccacgtgtcgggccagagtaacggtcgggacccactggccctggccaaggcagtccagatccactatgacactcagcacactatgtatttcgcctgagcctgtgagcagttctgtcctctatctctcctctctctctatttgccagtctctctatctttcttcttgcgtcttgatgtgcaccaaacggttcgaagccagtgaagtgtgcgcagtggagtattttccttttggaaaaacgacatccggcgttcccgatcgaagccgccctctaccagcaatcagcaccgagagaccgttggggtttccgatgcacagagaaaacaacaagaaaacacagttgagacattttggggggagggaagggttgttatttttgaatgtctcttttgtttttaaaagatacactgagcaatggagtggactgacggcaattgccagtggcagctcttactctcccagctaagcagactctgtctacttttacctcaa

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