LOCUS       XM_023701038            3358 bp    mRNA    linear   ROD 24-JAN-2018
DEFINITION  PREDICTED: Octodon degus protein argonaute-3 (LOC101573127),
            transcript variant X3, mRNA.
ACCESSION   XM_023701038
VERSION     XM_023701038.1
DBLINK      BioProject: PRJNA193441
KEYWORDS    RefSeq.
SOURCE      Octodon degus (degu)
  ORGANISM  Octodon degus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia;
            Hystricomorpha; Octodontidae; Octodon.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_004524706.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Octodon degus Annotation Release 102
            Annotation Version          :: 102
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.0
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3358
                     /organism="Octodon degus"
                     /mol_type="mRNA"
                     /isolate="3935"
                     /db_xref="taxon:10160"
                     /chromosome="Unknown"
                     /sex="female"
     gene            1..3358
                     /gene="LOC101573127"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 4 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:101573127"
     CDS             779..2659
                     /gene="LOC101573127"
                     /codon_start=1
                     /product="protein argonaute-3 isoform X3"
                     /protein_id="XP_023556806.1"
                     /db_xref="GeneID:101573127"
                     /translation="

MCEVLDIHNIDEQPRPLTDSHRVKFTKEIKGLKVEVTHCGTMRRKYRVCNVTRRPASHQTFPLQLENGQTVERTVAQYFREKYTLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLVRSANYETDPFVQEFQFKVRDEMAHVTGRVLPAPMLQYGGRNRTVATPSHGVWDMRGKQFHTGVEIKMWAIACFATQRQCREEILKGFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVIKTSPQTLSNLCLKINVKLGGINNILVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPSRYCATVRVQRPRQEIIQDLASMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFRQVLYYELLAIREACISLEKDYQPGITYIVVQKRHHTRLFCADRTERVGRSGNIPAGTTVDTDITHPYEFDFYLCSHAGIQGTSRPSHYHVLWDDNCFTADELQLLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHVSGQSNGRDPQALAKAVQIHQDTLRTMYFA"

     misc_feature    779..1120
                     /gene="LOC101573127"
                     /note="PAZ domain, argonaute_like subfamily. Argonaute is
                     part of the RNA-induced silencing complex (RISC), and is
                     an endonuclease that plays a key role in the RNA
                     interference pathway. The PAZ domain has been named after
                     the proteins Piwi,Argonaut, and Zwille; Region:
                     PAZ_argonaute_like; cd02846"
                     /db_xref="CDD:239212"
     misc_feature    order(914..916,959..961,1001..1003,1013..1015,1067..1069,
                     1088..1090,1094..1096)
                     /gene="LOC101573127"
                     /note="nucleic acid-binding interface [nucleotide
                     binding]; other site"
                     /db_xref="CDD:239212"
     misc_feature    1253..2530
                     /gene="LOC101573127"
                     /note="PIWI domain, Argonaute-like subfamily. Argonaute is
                     the central component of the RNA-induced silencing complex
                     (RISC) and related complexes. The PIWI domain is the
                     C-terminal portion of Argonaute and consists of two
                     subdomains, one of which provides the...; Region:
                     Piwi_ago-like; cd04657"
                     /db_xref="CDD:240015"
     misc_feature    order(1664..1666,1676..1678,1712..1723,1730..1732,
                     1754..1756,1763..1765,1775..1777,1787..1789)
                     /gene="LOC101573127"
                     /note="5' RNA guide strand anchoring site [active]"
                     /db_xref="CDD:240015"
     misc_feature    order(1868..1870,1874..1876,2084..2086,2498..2500)
                     /gene="LOC101573127"
                     /note="active site"
                     /db_xref="CDD:240015"
ORIGIN      

caggacctgttggggcccagcccctactcatggtgcccagaagacccggctatggcaccatgggcaaacccattaagctgctggctaattgttttcaagttgaaatcccaaagattgatgtctacctctatgaagtagacattaaaccagacaaatgtcctaggagagtgaacagggaggtagttgactcaatggttcagcattttaaagtaactatatttggagaccgtagaccagtatatgacggaaaaagaagcctttatacagctaatccacttcctgtggcaactactggggtagatttagatgttacattacctggggaaggtggaaaagatcgacctttcaaggtgtcaatcaaatttgtctctcgggtgagttggcacctgctgcatgaagtactcacaggacggaccttgcctgagccactggaattagacaagccaatcagcactaaccctgtccatgccgttgatgtggtgctacgacatctgccctccatgaaatatacacctgtggggcgttcctttttctcagctccagaaggatatgaccaccctcttggagggggcagggaagtatggtttggattccatcaatctgttcgacctgccatgtggaaaatgatgcttaatattgacgaaagagacctctggcagcagtgtggaaaatagatagaggagaaaaaactaatctgagaagccagttaggagacttttcaatcactagttcagtttctgccactgccttctacaaagcacaacctgtcattcagtttatgtgtgaagttcttgacattcataatattgatgagcaaccaagacctctgactgattctcatcgggtaaaattcaccaaagagataaaaggtctaaaagttgaagtgactcattgtggaacaatgagacggaaataccgtgtttgtaatgtaacgagaaggcctgccagtcatcaaacctttcctttacagttagaaaatggccagactgttgagagaacagtagcacagtacttcagagaaaagtatactctccagctgaaatacccacaccttccctgtctgcaagtggggcaggaacagaagcatacctacctgccactagaagtctgtaatattgtggcagggcaacgatgcatcaaaaagctaacagacaatcagacttctactatgatcaaggcaacagcaagatctgcaccagatagacaagaggaaattagcagattggtaagaagtgcaaattatgaaacggatccatttgttcaggagtttcaatttaaagttcgggatgaaatggcccatgtcaccggacgcgtccttccagcacctatgctccagtatggaggacggaaccgaacagtagcaacaccaagccatggggtatgggacatgcgtggaaaacagttccacacaggagttgaaatcaaaatgtgggccattgcttgttttgccacacagagacagtgcagagaagaaatattaaaggggttcacggaccagctgcgtaaaatctccaaggatgcaggaatgcccatccagggccagccatgtttctgcaaatatgcacagggagcagacagtgtagagcccatgtttcggcatctcaagaacacatattctgggctacagctcattattgtcatcctgccagggaaaacaccagtatatgcagaggtaaaacgtgtaggagatacacttttgggtatggctacccagtgtgttcaagtcaagaatgtaataaaaacatctcctcaaactctctcaaatttgtgcctaaagataaatgttaaactcggagggatcaataatattcttgtacctcatcaaagaccttctgtgttccagcaaccagtgatatttttgggagcagatgtcactcatcctcctgctggtgatggaaagaagccctctatcgctgctgttgtaggtagtatggatgcccacccaagcagatactgtgccacagtcagagttcagagacctcgacaggagatcatacaagatttggcctccatggtccgggaacttctcattcaattttataagtcaactcggttcaaacctactcgtatcatcttttatcgggatggtgtttcagagggacagtttagacaggtattatattatgaactacttgcaattcgagaagcctgcatcagtttggagaaagactatcaacctggaataacctacattgtggttcagaagagacatcatactcgattattttgtgctgataggactgaaagggttggaagaagtggcaatattccagctggaacaacagttgatacggacattacacacccatatgagtttgatttttacctttgtagccatgctggaatacagggtaccagccgtccttcgcactatcatgttttatgggatgataattgctttactgcagatgaacttcaactgctaacttaccagctctgccacacttatgtacgctgtacacgatctgtttctatacctgcaccagcatattatgctcatctggtggcattcagagccagataccatcttgtggacaaagaacatgacagtgctgaaggaagccatgtttcaggacagagcaatgggcgagacccacaagctcttgccaaggctgtacagattcaccaagataccttacgcacaatgtactttgcttaacaagtccaagtgtgttcttgaagggaagaactgagcgatgaatcaacatacagcatatgtctccagtagtccactgagtagatgtgtctccagccatacagaagccagcactgtgtgggagcccggtccttatgttgatgcaaggaagattgtttacttcatcaaggaacgcagcaccattatgcaatataaaaccagccagctgctttttgtgcggtctcctgtaggaagtatcgcagttgttttgttttctcttcttatagtctaacccttttaatgcctttacctcaagttgcttggcagcacaactatctttgcaaaaaaaagtaaagcaaaagtaaatgatggtttaaaaaacatacacctacacaaataatcaaagtgaatattcacaattacgtgtgcaaaaaattaatgtgcattcatatattcttgtaaacggagtctgtttttaaatatatacatgcatatttcataggcatatatatctgagtctagatggataatagatatatatgtgtttatgtatatattttaggattcattccattggggaattttccttcccttttattctctgctcactaccaccttcatttctctctcaacctcccttgccctcatcttctatattcctaatgctgccagtgacattcaaatgttcatcgatgtggctcatttgaatgtgaagcgtggcaa

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