2024-09-08 11:03:21, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS XM_023476568 2876 bp mRNA linear INV 16-OCT-2023 DEFINITION PREDICTED: Eurytemora carolleeae protein argonaute-2 (LOC111704341), mRNA. ACCESSION XM_023476568 VERSION XM_023476568.1 DBLINK BioProject: PRJNA423276 KEYWORDS RefSeq; includes ab initio. SOURCE Eurytemora carolleeae ORGANISM Eurytemora carolleeae Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea; Multicrustacea; Hexanauplia; Copepoda; Calanoida; Temoridae; Eurytemora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_019396495.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Updated annotation Annotation Name :: GCF_000591075.1-RS_2023_10 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.2 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 10/05/2023 ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 1% of CDS bases ##RefSeq-Attributes-END## FEATURES Location/Qualifiers source 1..2876 /organism="Eurytemora carolleeae" /mol_type="mRNA" /db_xref="taxon:1294199" /chromosome="Unknown" gene 1..2876 /gene="LOC111704341" /note="protein argonaute-2; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 96% coverage of the annotated genomic feature by RNAseq alignments" /db_xref="GeneID:111704341" CDS 49..2661 /gene="LOC111704341" /codon_start=1 /product="protein argonaute-2" /protein_id="XP_023332336.1" /db_xref="GeneID:111704341" /translation="
MYPGRPNPGTGLPQNSVMPGQGSLAPGSMPPGQGALPPVQTPLGLGFGAGGLGQSLPSYGGQSSTYGGQSGFSGSQTGSFGGTGSYGGSSGGNGNGGIHGQLPGLLGALGGIGGLGPMVPPPLQTDRPVHSSGSSNSPPSQLVSPLNISPPGLPSPDNPVFNCPRRPNLGREGRPIVLRANHFRIDMPRGYINHYIISIQPDKCPRRVNRDIIQTMVNAYSKIFGTQKPVFDGRSNLYVRDPLPIGKDAVELEVTLDGEGKDRVFRVSIKWHAQVSLFALEEALEGRTRQIPHDAIQALDVVMRHLPSLTYTPVGRSFFSSPEGYYHPLGGGREVWFGFHQSVRPSQWKMMLNIDVSATAFYKAQAAIDFMCEVLDIRDINEQKRPLTDSMRVKFTKEIKGLKIEITHCGNMRRKYRVCNVTRRPAQMQSFPLQLENGQTVECTVAKYFLDKYKMKLRFPHLPCLQEFGLHISRELMEVRGRVLPPPKLQYGGRTKQQALPNQGVWDMRGKQFFSGVDIKDWAIACFAPQRTVREDSLRTFTQQLQKISSDMGMPIIGQPCFCKYAGGEDQVEPMFRFLKTSFPALQLVVVVLPGKTPVYAEVKRVGDTVLGMATQCVQAKNVNKTSAQTLSNLCLKINVKLGGVNSILVPNIRPKVFNEPVIFLGADVTHPPVGDSRKPSIAAVVGSQDAHPSRYAATVRVQKHRQEIIEDLSAMVKEHLTMFYKSTGGYKPHRIIMYRDGVSEGQFSQVLQLEFDFYLCSHQGIQGTSRPSHYHVLWDDNRFEADELQQLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRSRYHLVEKEHDSGEGSHTSSLGSEDRAPAAMARAITVHTDSMKVMYFA"
misc_feature 568..957 /gene="LOC111704341" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:465134" misc_feature 985..1137 /gene="LOC111704341" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:462567" misc_feature 1138..1446 /gene="LOC111704341" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature 1435..2529 /gene="LOC111704341" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1846..1848,1858..1860,1894..1905,1912..1914, 1936..1938,1945..1947,1957..1959,1969..1971) /gene="LOC111704341" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(2050..2052,2056..2058,2269..2271,2497..2499) /gene="LOC111704341" /note="active site" /db_xref="CDD:240015" ORIGIN
aaggaatttgaactctagtcttgagtttagttaaaaactagtgccaatatgtatcctggaagacccaaccctggaactggtctgccacagaactcagttatgcctggacagggttcccttgctccgggttctatgccccctggtcagggtgctctaccccctgttcagactcctctaggactagggttcggagctggaggtctaggacagtctctgccatcgtatggaggtcaaagttctacctatgggggacagtccggattttccggctcccaaactggttctttcggaggaaccggttcttacggtggatccagcggtggaaatggtaacggaggtatccacggccaactgcccggccttttgggagctcttggtgggattggcggtctgggcccgatggtacccccgcccctgcaaactgaccggccggtacatagttcaggaagctccaactccccgccgtcccagcttgtgtctccacttaacatatccccgcccggcctgccctcacccgacaaccctgtcttcaactgcccaaggcgccccaatcttggaagagagggtagacctattgtgcttcgagcaaaccactttagaattgacatgccgaggggttacatcaaccactatatcatctcaattcagccggataaatgccccaggagggtcaatagagatatcattcaaacaatggtaaacgcatacagcaagatatttggaacccagaaacctgtatttgatggaagaagcaatctttatgtcagagatcctcttcccatcggtaaggatgctgttgagcttgaagtaaccctggatggagaaggaaaggatcgtgtgttcagggtttctatcaagtggcatgctcaggtgtctctgtttgccctggaagaagcactagagggtagaaccagacagatcccccacgatgcaatccaggcattggacgtggtgatgcgacacttgccttccctgacttatactcctgtaggacgatcattcttctccagccctgagggttactaccacccgctgggcggaggtcgtgaggtttggtttggtttccatcaatctgtccgccccagccagtggaagatgatgctcaacattgacgtgtccgccactgccttctacaaggcccaggcggcaatagacttcatgtgcgaggtgctggatatccgtgatatcaacgagcagaagcgccctctcacagattctatgagagtcaagttcactaaagaaatcaagggactaaaaattgaaatcactcactgcgggaacatgagaagaaaatacagggtgtgcaacgtgacccgccggcctgcgcagatgcagagtttccctcttcagctggagaacggacagacagtggagtgtacggtcgctaaatatttcttggataaatataagatgaagcttaggttccctcaccttccctgtttacaggagttcggtcttcatatatctagagaactaatggaggtacgaggacgtgtcctgccccctcctaaactacagtatggaggacgcaccaaacaacaagctctacccaaccaaggagtatgggatatgagggggaaacagttcttctcaggagtcgatatcaaggattgggcaattgcttgctttgctcctcagcgtacagtacgcgaagactccctacgtacgttcacccagcagctgcagaagatcagttccgacatgggaatgccgataataggacaaccctgtttctgtaagtatgcggggggagaggaccaagtagaaccaatgtttaggtttctcaagacctccttccctgctctacagctagttgttgttgttctacctggcaaaactccagtctatgcggaggtgaagagagttggagatacagtccttggtatggcaactcagtgtgtccaggctaagaatgtaaacaagacatcagcgcagacattgtccaacctttgcttgaagattaacgtgaagctgggaggagttaactctatccttgtcccgaatatcaggcctaaggtgttcaatgaacctgtaatattccttggagctgatgtaactcatcctcctgtaggagactcaaggaaacccagtatagcagctgtagtaggaagccaggatgctcatccttctaggtatgcagcaactgttcgtgtacagaaacatcgccaggagatcattgaggatctttctgctatggtgaaggaacatcttaccatgttctataaatccacaggagggtacaagccccacaggattattatgtacagagatggagtctcggagggtcagttctcgcaggttcttcagttagagtttgatttctatctgtgttcccaccagggaatccagggaactagcagacccagccactaccatgtactctgggatgataataggtttgaagctgatgaactgcagcagctgacctatcagctgtgtcacacctatgtacggtgtacacgttctgtatcaattcctgctcctgcgtactatgcacatttagtagctttcaggtcccgttatcacctggttgaaaaggaacatgacagtggagaaggttcccacacctctagcctgggatcagaggacagagccccagcagccatggcccgggcaatcacagtccacaccgactcaatgaaagtcatgtacttcgcgtagaagatcgtcgtcatcaggaggtttatggaatccttctcccacaaattccattctaaattttatcattacgcattcatctcatgcgtacatatgatttactaattttgttcaagctgttatacaattttagacttgttgcacaattatggaatattcccgttgtgcatttttgaaatagtttctatcgctaggtcaataaaattcaaattcttcaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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