2024-04-23 16:20:33, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_023231830 5330 bp mRNA linear PRI 30-DEC-2019 DEFINITION PREDICTED: Piliocolobus tephrosceles testis and ovary specific PAZ domain containing 1 (TOPAZ1), mRNA. ACCESSION XM_023231830 VERSION XM_023231830.1 DBLINK BioProject: PRJNA419387 KEYWORDS RefSeq. SOURCE Piliocolobus tephrosceles (Ugandan red Colobus) ORGANISM Piliocolobus tephrosceles Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Colobinae; Piliocolobus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_045435.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Piliocolobus tephrosceles Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.3 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5330 /organism="Piliocolobus tephrosceles" /mol_type="mRNA" /isolate="RC106" /isolation_source="whole blood" /db_xref="taxon:591936" /chromosome="2" /sex="male" /country="Uganda: Kibale National Park" /lat_lon="0.4862 N 30.3897 E" /collection_date="27-Jul-2014" gene 1..5330 /gene="TOPAZ1" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 5 ESTs, 3 Proteins" /db_xref="GeneID:111555602" CDS 169..5232 /gene="TOPAZ1" /codon_start=1 /product="protein TOPAZ1" /protein_id="XP_023087598.1" /db_xref="GeneID:111555602" /translation="
MRRPPPLGPTTASGPEGKVRNLRKRQAPGLGAAGGCGPEAGGRGENRQKRRMVARTTPGRGEVKSDKSVAASGAGKAARRRVEGRRGQVSPSDRRGLEAAKEAELPLQTERHTKEKRKVTEASSDDPQPGFDLVRKESLTSSESFQTVECLQSLGKEGIVEGIKRRIRNKKLKSLENPRLKITENEATQNIKVEFQDELYKNTPKYSYNILSPEVENNSIFKLRDCNCFPHSKGCNDENNLPYEPDGGCMHVAENFSKKGNLRSLAEKSDTSSIPQLLQTEENVMGVNKLLPEESDLYQSKINGLLPCLQREKNKYSIEESSVGRKPRKRMKLSEKADETVTQMNFSNEYKKSELMLQENQMIADGKEAETKSSLNVLRKVSHNTVSLMDHLLSAPEMVERETSSEHHVNAVFQKTIEPLLKEETENASEPLGYENMALKEDFKSKSFVGKSPEYHIERRSSREDLRSDSEELKLSCQRTIPMTGKRTWPYYSCARISAWCWKKASLPESSYFLPGSQESCKKVDVPKHQTNETHLTDSKLLLQSSLTETNTESSSKEKLDSNLNCLFSVPAVERTLMVIKEPIIKDDKKIKSEELSRSGSEVISNTTEDTQLTSETQSLTVNKKRDRGNLTKLNLTAASKDGQEANNSTGKSIRRKACVAKQTFVVPDLVKILNTGRLTNFKIPLLKNKTKKRKEVNAKSSEREAYSPLELLDNLSGADARQNRSKENVSMTMLGPQNLSIQNSVTPVQASSDSFYNKNSCSISPSFTKHSNSSKPSNHFSEPGNIVSNKEVASLTVENNAFSCDPGYVEKSPSFCCNKQETFRPVSSEVRGRKITKNFSEVGFPDILKAYEDDVLLIDVIQDDPDLFGVSNEGELSFTSEVPRISQEPNVPGEHQSTDSKYVETPVKKEPSDDLRELPVLDCGLIKPDICASNSAASEIKHDPKDTNTSLGEVANETSENETLGDFSEQIKGSDLDEKHRFTDKVITKEEKENIYEVCKSKDSRNADVMVGECQFAAPVPKPLCLLVPPLNLSGHQEDTILNTWMNDFRFLGKHSVLKLQNPETCEIFKREKNVGVFQKSLGLMIPYKYCKFHFNTLRGCERPLCKFAHVPEQGDEKVCMDVFKKYININELCLLQRAVNVFMEYYRKFPPGIYFDLQVLNDLLNSLLKHCLLKEVFQIVNLSIMVKMLPSLKILLNIFEHVATMKLRNAVPALIDIFCKLVEAGMVLDPEHFNYIVKLLYQVQASQQEITAVLEMKSRLQMRQFKKNWKCDLDSALNELEHCKEKGDWTKLGKLYINVKMGCEKFADFQTFCACIAETLTKNCEDERPDTPFCEFAETVSKDPQNSKVDKGVLGRIGISAMYFYHKLLQWSKGRKVLDKLYELKIHFASLKGLTGPEKLASRCQIVNVAAEIFLKSGSLDGALWVMRESEWIIDTPLWPCDRLDVLNRHNLLCTIAHETLAKSLYRQTFEVLQNLPGFQNSQETVEVSQYSLLFNKLLGSCIESNTLGMSSSVAEFMISKSIPIDFSFLRRLITSLGRSHLWLKARAHYKSALSLGCYPPLEGNLYRKLLLIPSYLSEIEMLLAIEIFMVSNASSIQSPGTSTQILQIVLKRCEDNQSRSNDDYQAAVERLIMAARISDPKLFVKHMTVNVNKEQVYSLEHCSALKWLKENMKWAGKVWLFSNH"
misc_feature <349..>612 /gene="TOPAZ1" /note="Domain of unknown function (DUF3827); Region: DUF3827; pfam12877" /db_xref="CDD:432847" misc_feature 4012..4539 /gene="TOPAZ1" /note="Putative aspartate racemase; Region: Asp_Glu_race_2; pfam14669" /db_xref="CDD:434113" ORIGIN
acttccgcttacgcgccccacttccgcttccggccctgggctgtggtgactggcggtgtggggtgggtcagagggcagtaggtgcctggcgtggggagcagcctttgcgccgcggtgggttcctgcgagctggtgcagagggaccccggcgggccggccccggggcacatgcgacgacctccacccctgggccccacgacggcctcagggcctgaaggcaaagtgcgaaacctgcgaaagcggcaggcgccagggctaggcgcggcgggaggctgcggccctgaggctggggggcgcggggagaataggcaaaagaggagaatggtggcccggaccacccctgggagaggcgaggtgaaaagtgacaagtcggttgcagcatcaggggctggaaaggccgcaaggcgtcgggtggaggggcgccggggccaggtgagcccgtcagatcggagaggcctagaagcagcaaaggaggctgaactccccttgcaaacggaaagacacaccaaggaaaaaagaaaagttactgaagcctcaagtgatgatccacagccagggtttgacctggtaagaaaggaatcattaactagttcggaatctttccaaacagtggagtgcttgcagtctttgggtaaggaaggtatagtagaaggtattaaaagaagaattcgaaataaaaaacttaaaagcttagaaaacccacgtctcaaaataaccgaaaatgaggctacacaaaatattaaggttgaattccaagatgaattgtacaagaatactccaaaatattcttataacatcttgtcacctgaagtagaaaataattccatttttaaattacgtgattgcaattgttttccccattccaagggttgtaatgatgaaaacaacctgccatatgagcctgatggtggatgtatgcatgtagcagaaaatttctcaaagaaaggaaaccttagaagtcttgcagaaaagagtgacacaagtagtattcctcaactcttacaaactgaagaaaatgtaatgggagtaaataagttactaccagaagagagtgatttataccaaagtaaaatcaatggcttgcttccctgccttcaacgtgaaaaaaataaatattcaatagaggagagcagtgttgggcgaaaacccaggaaaaggatgaagttgtctgaaaaagcggatgaaacagttactcagatgaacttctctaatgagtataagaagtctgagttgatgttgcaagaaaatcaaatgattgctgatggtaaagaagcagagactaaaagttctttaaatgttttgagaaaagtaagccataatacagtctctttgatggatcatttattaagtgccccagaaatggtagaaagagaaacaagttctgaacatcatgtaaatgctgtgtttcagaaaaccatcgaaccacttttgaaagaagaaacagagaatgcttcagagcccttaggatatgaaaacatggcgctgaaagaggattttaaatcgaaaagcttcgtagggaaatcacctgagtaccatattgaaaggagatcttcacgggaagacttaagaagtgactctgaagagttgaagttaagctgtcagagaacaatacctatgactggtaaaagaacttggccctattattcatgtgctagaatatctgcctggtgttggaaaaaggcttccttgccagaatcaagttactttcttcctgggtctcaggaaagttgtaagaaagttgatgtccctaaacaccaaacaaacgagacccacttaaccgactccaaattattattacaaagttccttaacagaaacaaatactgaatcttcaagtaaagaaaaattagattctaatttgaattgtttgttttcagttcctgcagtagaacgtactttaatggttataaaggaacctataatcaaggatgataaaaagataaaatcagaggaactgagcagaagtgggtcagaggtaatttctaacactactgaagatactcagttaaccagtgagactcaaagcttaacagtaaataaaaaaagagatagaggaaatttaacaaaacttaatttgacagcagcttccaaagatggtcaggaagcaaataactctacaggcaaaagtattcgtcgaaaagcatgtgttgctaaacaaacatttgtagttccagacttggttaaaatattgaacacaggacgactgactaattttaaaattcctttacttaagaataaaacaaaaaaaagaaaagaagtaaatgccaagtcatcagagagagaagcttacagtcctttagaacttctggacaatttatctggagcagatgcaagacagaataggagtaaagaaaatgtctccatgacgatgttaggacctcaaaatttgagcatacaaaatagtgtaactccagtgcaagctagttctgactcattctacaataagaattcctgtagtatttctccaagctttacaaagcacagtaacagtagcaaaccatctaatcacttctctgaaccaggcaatattgtttctaataaagaagttgcttctctcacagttgaaaataatgctttttcttgtgatcctgggtatgtagagaaaagtccttccttctgctgtaataaacaagaaacattccgaccagtttccagtgaagttaggggtagaaaaataactaagaatttttcagaagtaggatttccagatattcttaaagcatatgaagatgacgtcctcttaattgatgtaattcaagatgacccagacctctttggagtctccaatgagggggagctctcatttacttcagaggtccccaggataagccaagagcccaatgttcctggagagcaccaatcaacagactccaagtatgtggaaactccagtaaaaaaagaaccaagtgatgacttaagagaacttcctgtactggactgtggattgataaagccagacatctgtgcttccaactcagcagcaagtgaaataaaacatgatcccaaagatacaaacacttccttaggagaagttgctaatgagacctctgaaaatgaaacactgggagacttcagtgaacaaattaaaggttcagacttggatgaaaagcatagatttacagacaaagtgattaccaaagaagaaaaagaaaatatttatgaagtttgcaaaagcaaagattctagaaatgccgacgttatggttggcgaatgtcagtttgcagcaccagtcccgaaacctctgtgcttattagtacctcctttgaatctaagtggtcatcaggaagacacaatcctgaatacctggatgaatgatttcagatttctgggaaaacattctgtcctaaagctgcagaatcctgaaacttgtgaaatatttaagagggaaaaaaatgtgggggtgttccagaagtccctagggttgatgataccctataaatattgcaaatttcattttaatacattacgtggctgtgaacgaccactgtgcaagtttgctcatgtgcctgaacaaggggatgaaaaggtttgcatggatgtgtttaagaaatatataaatatcaatgaactgtgtttgctacagcgtgcagtaaacgtatttatggagtactacagaaagtttcccccaggtatatactttgatttacaagtgctaaatgaccttctaaattctttactcaaacattgtttattgaaagaagtatttcagatagtgaacctcagcataatggttaaaatgctgccttctctgaaaatattactaaacatatttgagcatgtggcaactatgaaattaaggaatgctgtacctgctttaattgatatcttttgcaagcttgttgaagccgggatggtgcttgacccagagcactttaactatattgttaagctcttatatcaagtacaagcttcccaacaagaaataactgcagttctagaaatgaaatccaggttacagatgaggcaatttaaaaagaactggaagtgtgatttagattcagctttgaatgaattagagcattgtaaagaaaaaggtgactggaccaaattgggaaaattatacattaacgtaaaaatgggctgtgaaaaatttgcagatttccagacattttgtgcttgcattgctgaaactctcacaaaaaactgtgaagatgaaagaccagatactcccttttgtgaatttgctgaaacagttagcaaagatccacaaaacagtaaagtagataaaggtgtactgggaagaatcggaatcagtgctatgtacttctatcacaagctgttgcagtggtccaagggaaggaaggtcttagataaactatatgaattaaaaatacactttgcaagtttaaaaggacttacagggcctgagaagttagcatcaagatgtcaaattgtgaatgtggcagcagaaatttttctaaaaagtggaagcctagatggtgccctttgggtaatgagggagtcagaatggataatcgatacgcctctatggccttgtgatagactggatgtgcttaatcgacataatttgctctgtacaattgcacatgaaaccttagccaagagcctttatagacagacatttgaagttttgcagaatctaccaggttttcaaaattcccaagaaactgtggaagtctcacaatatagccttctttttaataagcttctaggttcctgtatagaaagcaatactcttggtatgtcatcctctgtggcggaattcatgatttcaaagagcatccctattgatttttcctttcttagaagattaattacttctttaggaaggagtcatttatggctcaaagccagagcccactacaaaagtgctctttccttgggttgctacccaccactggaaggaaacttataccgaaaacttcttctaattccatcttatttatctgagattgaaatgctcttagctattgaaatcttcatggtatctaatgctagtagtattcagagtcctggaacttctacacagatactgcagatagttttgaaaaggtgtgaagacaaccagtctcggagcaatgatgattatcaagctgcagtagaaaggttaattatggctgctcgtatatcagatccaaagctttttgttaaacatatgactgtcaatgttaataaggaacaggtttatagtttggagcattgttctgccctgaaatggttaaaagagaatatgaagtgggctggaaaagtttggcttttcagtaaccattagttaataaagtctgctctttttttttttttttttttttttttagttcaagtaatcattgttgaaaataaaggcaataaaaatagacagttttcaccata
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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