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2024-04-25 20:01:40, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_023189701            1219 bp    mRNA    linear   PRI 30-DEC-2019
DEFINITION  PREDICTED: Piliocolobus tephrosceles claudin 17 (CLDN17), mRNA.
ACCESSION   XM_023189701
VERSION     XM_023189701.3
DBLINK      BioProject: PRJNA419387
KEYWORDS    RefSeq.
SOURCE      Piliocolobus tephrosceles (Ugandan red Colobus)
  ORGANISM  Piliocolobus tephrosceles
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Cercopithecidae; Colobinae; Piliocolobus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045452.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Dec 30, 2019 this sequence version replaced XM_023189701.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Piliocolobus tephrosceles Annotation
                                           Release 102
            Annotation Version          :: 102
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1219
                     /organism="Piliocolobus tephrosceles"
                     /mol_type="mRNA"
                     /isolate="RC106"
                     /isolation_source="whole blood"
                     /db_xref="taxon:591936"
                     /chromosome="19"
                     /sex="male"
                     /country="Uganda: Kibale National Park"
                     /lat_lon="0.4862 N 30.3897 E"
                     /collection_date="27-Jul-2014"
     gene            1..1219
                     /gene="CLDN17"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 2 Proteins"
                     /db_xref="GeneID:111524515"
     CDS             183..857
                     /gene="CLDN17"
                     /codon_start=1
                     /product="claudin-17"
                     /protein_id="XP_023045469.2"
                     /db_xref="GeneID:111524515"
                     /translation="
MAFYPLQIAGLVLGFLGMVGTLATTLLPQWRVSAFVGSNIIVFERLWEGLWMNCIRQARVRLQCKFYSSLLALPPVLETARALMCVAVALSLIALLIGICGMKQVQCTGSNERAKAYLLGTSGVLFILTGIFVLIPVSWTANIIIRDFYNPAVHIGQKRELGAALFLGWASTAVLFIGGGLLCGFCCCNRKKQRYRYPVPGHCVPHTDKQRNVTMPGNTSTSYV"
     misc_feature    198..728
                     /gene="CLDN17"
                     /note="PMP-22/EMP/MP20/Claudin family; Region:
                     PMP22_Claudin; cl21598"
                     /db_xref="CDD:451326"
ORIGIN      
tacaacaggtacttctagttaggccaagttcagtcacagtcactgatttggactaaaatgatatgggcagcagccaaggagaacatcatcaaagacttcgctagactcaagagccttccacgttctacatcttgagcatcttctaccactccgaattggactagttttcaaagtaaaaggcaatggcattttatcccttgcaaattgctgggctggttcttgggttccttggcatggtggggactcttgccacaacgcttctgcctcagtggagagtatcagcttttgttggcagcaacattattgtctttgagaggctctgggaagggctctggatgaactgcatccgacaagccagggtccggttgcaatgcaagttctatagttcattgttggctcttccgcctgtcctggaaacagcccgggcactcatgtgtgtggctgttgctctctccttgatcgccctacttattggcatctgtggcatgaaacaggtccagtgcacgggctctaatgagagggccaaagcataccttctgggaacttcaggagtcctcttcatcctgacgggcatcttcgttctgattccagtgagctggacagccaatataatcatcagagatttctacaacccagctgtccacataggtcagaaacgagagctgggagcagcacttttcctcggctgggcaagcactgctgtcctcttcattggagggggtctgctttgtggattttgctgctgcaacagaaagaagcaaaggtacagatatccagtgcctggccactgtgtgccacacacagataagcaaagaaacgtgacaatgcctggtaatacctccaccagttatgtctaatgcctgcttttggctccaagtgtggactatggtcaatgtttgttataaagtcctgctagaaactgtaagtatgtgaggcaggagaacttgctttatatctagatttaaattgatatgaaagtttcagtttgttaccggtaggaaagaaaatgacttacttggacattctgacttcaggtgtattaaatgcctttactattgttggactcaattgctgttccaatgttcatattctaaatgcaagtatgcccataatcattatcaagtgtacaatgatggactactttttgactatcatattttatctgataagaatcaaaatttgaaatcaatactctataacaataaaacatatacctatt
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]