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2024-03-29 22:21:46, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_022937371            5165 bp    mRNA    linear   INV 25-OCT-2017
DEFINITION  PREDICTED: Stylophora pistillata uncharacterized LOC111332102
            (LOC111332102), transcript variant X1, mRNA.
ACCESSION   XM_022937371
VERSION     XM_022937371.1
DBLINK      BioProject: PRJNA415215
KEYWORDS    RefSeq.
SOURCE      Stylophora pistillata
  ORGANISM  Stylophora pistillata
            Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Scleractinia;
            Astrocoeniina; Pocilloporidae; Stylophora.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_019217969.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Version          :: Stylophora pistillata Annotation
                                           Release 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 7.4
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5165
                     /organism="Stylophora pistillata"
                     /mol_type="mRNA"
                     /isolate="CSM Monaco"
                     /isolation_source="northern Red Sea"
                     /db_xref="taxon:50429"
                     /chromosome="Unknown"
                     /tissue_type="whole animal"
                     /country="Jordan: Aqaba"
                     /collection_date="01-Jan-1995"
                     /note="holotype #3, clade 4"
     gene            1..5165
                     /gene="LOC111332102"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 1 sample
                     with support for all annotated introns"
                     /db_xref="GeneID:111332102"
     CDS             98..4693
                     /gene="LOC111332102"
                     /codon_start=1
                     /product="uncharacterized protein LOC111332102 isoform X1"
                     /protein_id="XP_022793106.1"
                     /db_xref="GeneID:111332102"
                     /translation="
MMFDPFNPSPEPAIESDEDTMSPRERNASTDVNSMTLSSEHSFTPPSSTDQNDLSSMTGEEYREDNGNSAECNSSIETDMTVLREPYREENAEGPFNPSPGPAIESDEDTVPPREKDASSVVISITTSSEHPSTTPSSSDRNELPSMNGEENQEDNGSSAECNSSIETDMTVLRESYRDDNAEGPSSPSPAPTFESDEDTVPQREKDASSDVDSMTPSSEHSSTPPSSTDENCLPFMPGEENQEAKGSSADSKSSIETDITVLEEPYRGDNREGPFILIPGPVIENDKDTEPPLNKDASTDVNNMTTSSEHSSSPPTSTGQNNLPFITMEEYREDNGNSAETKSSIETDMTMLEVPNRSENREGLFTLSPAPAIESDENTAPPRKKDASSYVNSKTTSSEHSSTPPSSTDQNYLNSMTGEEYQEENGSSADPKSSIETDMTALEDPYRSDNREGPCILSPAPAIKRAEDTVQPRENDASTDVSRMTMSSKDSCSPHSPTDQKDLPCMNGKEYQEDNSSSAESKCSIETDMTVLEVPYRGDDLEGPFTLSPAPAIECDEDTVSPREKDASSNVNSMTTSSEHFFSLLSSTDQNDLPFMTEEENREDNGSSAECNSSIETDTIVLRELCRDENAEGPYNLSPGPAIKSDEDIEPQREKDASTDVNSMTTSLKHSSTSPFSTKLFLLPFTTPKRCREDNGDERRRTVWKSKECFENQERVLKVTLLASEWSSSMGGLSTINRQLAILLGKRKEEVSVTFLVPQFACSEEEKRCARSQNVFVREAEKRPAFSNSLDWLNFPPTDLDIDIVLGHGAKLGKQAQIIRVNRGCKWIQVEHTAPEELGIHKEYDMAISKGEEKKEDEVELCKLADAVAAVGPKLTRAYSSYLRSSEKHQHIIQLMPSTFSEFSNVKQATNEMKEFKVLTFGRGDPEDFSLKGYDISARAIAELRDKSYRLILVGAPEGKQDEVAEKLLKSGISKNQLTVRKFVQSKDILKELFCEVDLCIMPSRTEGFGLTALEAMSAGLPILVSSNSGFGEALCTISSGESFVVESEEPKEWAKAIDGVRQKKRAHRLKEIQQLRAAYEEKFSWEILCDTLLNKMRELVNEARHIREERQTAPICQSSLSVKRLEYVKRSEHRSHLTNGFQYKESSGAEWKTSCVTDNTALKKPHCGENAPGLFNRNPGQTAESEVESVLPRKNDASPFVNSMTSSSEHSFTPPSPTEQNDLPSRTRKEYREGNRRVVCMYDNNHYETQDADLKSSSERDIPELEVQAIESDEDTLPPGQKDVSVRINSMSLSPEHLSILPSSTYQNNLPFTRTTRKGYPEESGEIGCMYNNDQCETQEADRPLFLSINEKFYCVLFSVDDNVFSSAFKSIPFSGADLIIIQRQKKWSEENLKDTLRKMCGLNTRLKKTNYIIVVREKDESLTQTLEECTPGGKAYTMYVAWSRRPVKAGSGLTDVVEKNCVIFVGPPSKSATNWFVAETEQDFMRHIIKLFAPPGGVVLEFDNSDAQVSSCLINTIGSMECEPATLI"
     misc_feature    107..>1324
                     /gene="LOC111332102"
                     /note="transcriptional regulator ICP4; Provisional;
                     Region: PHA03307"
                     /db_xref="CDD:223039"
     misc_feature    2252..3385
                     /gene="LOC111332102"
                     /note="phosphatidyl-myo-inositol mannosyltransferase;
                     Region: GT4_PimA-like; cd03801"
                     /db_xref="CDD:340831"
ORIGIN      
tgtaccacgttatcttctgaactcgatctcagttgctgttgttagactctgggccaaattggtagcagttgcagaaactctgcgcttctacaccgcaatgatgtttgacccatttaacccaagcccagaaccggctattgaaagtgatgaggatactatgtcaccacgtgaaaggaatgcctcaaccgatgttaacagcatgaccttgtcatcagagcactcgtttactccgccttcctctactgaccagaatgacctgtcctccatgactggggaagagtaccgggaggataacggcaatagtgcggaatgcaatagctcaattgagacagacatgacagtgttaagagagccctaccgtgaggaaaatgcggagggaccatttaacccaagcccaggaccagctattgaaagtgatgaggatactgtgccaccacgtgaaaaagatgcttcaagtgtcgttatcagcataaccacatcatcagagcacccgtccactacaccttcctcaagtgaccggaatgaactaccctctatgaatggggaagagaaccaggaagataacggcagcagtgcggaatgcaatagctcaattgaaacagacatgacagtgttaagagagagttatcgtgacgacaatgctgagggaccatctagcccaagcccagcaccaacttttgaaagtgatgaggatactgtgccccaacgtgaaaaagatgcctcaagcgacgttgacagcatgaccccgtcatcagagcactcgtccaccccaccttcctctactgatgagaattgcctaccctttatgcctggggaagagaaccaggaagctaaaggcagtagcgcggactccaaaagctcaattgagacagacataactgtcctggaagagccctaccgtggcgacaatcgtgagggaccatttatcctaatcccaggaccagttattgaaaatgataaggatactgagccaccacttaacaaagatgcctcaaccgatgttaacaatatgaccacgtcatcagagcactcgtcgagtcctcctacctctacaggccagaataacctacccttcataactatggaagagtaccgggaagataacggtaatagtgcggaaacaaaaagctcaattgagacagacatgactatgctggaagtgccaaaccgtagcgaaaatcgtgagggactatttaccctgagcccagcaccagctattgaaagtgatgaaaatacggcaccaccacgtaaaaaagatgcctcaagctacgttaacagcaagaccacgtcatcagagcactcgtcaactccgccttcctctactgaccagaattacctaaactctatgactggggaagagtaccaggaagaaaacggcagtagtgcggacccgaaaagctcaattgagacagacatgactgcgcttgaggacccctaccgtagcgacaatcgtgagggaccatgtatcctaagcccagcaccagctattaaacgtgctgaggatactgtacaaccgcgtgaaaacgatgcgtcaaccgacgtcagtaggatgaccatgtcatcaaaggactcctgcagtcctcattctcctactgaccaaaaggacctcccctgcatgaatggaaaagagtaccaggaagataacagtagtagtgcggaatcaaaatgctcaattgagacagacatgactgtgctggaagtgccttaccgtggcgacgatcttgagggaccatttaccctaagcccagcaccagctattgaatgtgatgaggatactgtgtcaccacgtgaaaaagatgcctcaagcaacgttaacagcatgaccacgtcatcagagcattttttcagtcttctttcctctactgaccagaatgacctcccgttcatgactgaggaagagaaccgggaagataatggcagtagtgcggaatgcaatagctcaattgagacagacacgatagtgttaagagagctttgccgtgacgaaaatgctgagggaccatataacctaagtccaggaccagctattaaaagtgatgaggatattgagccacaacgtgaaaaggatgcctcaaccgacgttaacagcatgaccacgtcattaaagcactcgtctacttcacctttctccactaaactgttcctcctgccctttacgaccccgaaaaggtgccgggaagataatggcgacgaacgtagacgaacagtttggaaatcaaaggaatgttttgaaaatcaagagagagtattgaaggtgactctcctagccagtgagtggagttcatcgatgggaggcttgtccaccataaacagacagcttgccattcttctgggaaaacgtaaggaagaagtaagcgttactttccttgtcccacaatttgcttgttctgaagaagagaagagatgtgcacgaagtcaaaatgttttcgtgagagaagcggagaagcgtccagcctttagtaattctcttgattggttgaatttcccaccgacagaccttgatattgacattgtactgggtcatggagcaaagcttggtaagcaagcccaaattatcagagtaaatcgtggttgcaagtggattcaagtggagcacactgcaccggaagaacttggaatacataaagagtatgatatggctatttccaaaggagaagagaagaaggaagatgaagtggaattgtgtaagttggcagatgctgttgcggcggtgggaccaaagttgaccagggcttactcttcctacctgcgctcaagtgagaagcaccaacatataattcaactgatgccaagcacgttcagtgagttttcaaacgtaaaacaagctacaaacgaaatgaaagagtttaaggttttaacgtttggccgtggtgatccagaggacttcagtctgaaaggctacgatatctctgcgagggcgatagctgaactgagagacaaatcatatcgtctgatcctcgtaggtgcacctgaagggaagcaggatgaggttgcagaaaaactattgaaaagtggaattagtaaaaatcagctgactgtgagaaagttcgtgcaaagcaaggatatattgaaggaattattttgtgaggtggacctctgtattatgccatctagaaccgaggggttcggcttgacggctctggaagccatgtccgctggtcttcccattcttgtcagtagcaactcaggatttggtgaagcactgtgcactatatcatcaggagaatcattcgtggtggagtccgaggagcctaaggagtgggcaaaggcaattgatggtgtccgacagaagaaaagagcacaccgacttaaagagattcagcaactgcgagctgcatacgaggagaagttcagctgggaaatattgtgtgacactctattgaataagatgcgggaattagttaatgaagcacgtcacattcgtgaggaaagacaaaccgcacccatttgccagagctctctctctgtcaaacgcttggaatacgtaaaacgctcagagcatcgttctcatctaaccaacggttttcaatataaggaaagcagtggtgctgaatggaaaacctcttgcgtgacagacaacacagcgttgaaaaagccccactgtggtgaaaatgctccgggactatttaaccgtaacccaggacaaactgctgaaagtgaggtagaaagtgtgcttccacgtaaaaatgatgcctcacccttcgtgaacagcatgacttcgtcatcagagcactcgttcactccaccttctcccaccgagcagaatgacctgccctctaggactaggaaagagtaccgggaaggtaatcgaagagtggtatgtatgtacgacaacaaccactatgaaactcaagatgcggatttgaaaagctcaagtgagagagacatcccagagttggaagtacaagctattgaaagtgatgaagatacactgcctccagggcaaaaggatgtttcagtacgcattaacagcatgagcttgtccccagagcacttgtccattctaccttcctccacttaccagaataacctgccctttacgcgtacgaccaggaaagggtacccagaagaaagtggcgagattgggtgtatgtacaacaacgaccaatgtgaaactcaagaggcagatcgccccttatttttgtccatcaatgagaaattttactgcgtactgttctctgtggatgataatgttttttcttcagcatttaaaagcatcccctttagcggtgctgatttaatcattatacaaagacaaaaaaagtggagtgaggaaaatttaaaggatactttaaggaagatgtgtggcctgaacacaagattgaagaagactaactacatcattgttgtgagagaaaaagatgaatccttaacacaaaccctggaggaatgtacccccggagggaaggcttacaccatgtatgtggcctggagtagaagacctgtgaaagctggctccggactgacagatgtcgttgaaaaaaattgtgtcatttttgttggcccgccttcgaaaagtgctacaaattggtttgtggctgagactgaacaagattttatgcggcacatcataaagcttttcgcgcctccaggaggggttgtcttggagtttgataattcagatgctcaagtgagctcctgcttaattaacaccatcggttcaatggaatgtgaacctgctacccttatatgatgacgaaaggcctgtttctgcgtttaggagagaagctgaagccgcgacccacacaggagtagagaatttttctggcaagacgtttgtgatgtagatttacaatcacctccaataattcttgaagtgaaggttccgaatacatcagtggggttaacccttagctataaaacggtaaacaaagttagctgttagacgtaaagattgacaaatgttaaccgttcgttggagaaaaagtttaccgtagttttttttttattttaaaggtaacgtaaataaatttgttagcagtaaggtggccaaaagtttcactgataaccttaaaagtcatcaccctattaagaccctcttattaaacaatgtttgatacgtatttgcactcatgagtaccactcgagtattatgaagacatttccacggacccagtttagcttataatgtttgtaacatttcgtccacgtgattgagtattaaa
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]