2024-03-29 22:21:46, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_022937371 5165 bp mRNA linear INV 25-OCT-2017 DEFINITION PREDICTED: Stylophora pistillata uncharacterized LOC111332102 (LOC111332102), transcript variant X1, mRNA. ACCESSION XM_022937371 VERSION XM_022937371.1 DBLINK BioProject: PRJNA415215 KEYWORDS RefSeq. SOURCE Stylophora pistillata ORGANISM Stylophora pistillata Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Scleractinia; Astrocoeniina; Pocilloporidae; Stylophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_019217969.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Stylophora pistillata Annotation Release 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5165 /organism="Stylophora pistillata" /mol_type="mRNA" /isolate="CSM Monaco" /isolation_source="northern Red Sea" /db_xref="taxon:50429" /chromosome="Unknown" /tissue_type="whole animal" /country="Jordan: Aqaba" /collection_date="01-Jan-1995" /note="holotype #3, clade 4" gene 1..5165 /gene="LOC111332102" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns" /db_xref="GeneID:111332102" CDS 98..4693 /gene="LOC111332102" /codon_start=1 /product="uncharacterized protein LOC111332102 isoform X1" /protein_id="XP_022793106.1" /db_xref="GeneID:111332102" /translation="
MMFDPFNPSPEPAIESDEDTMSPRERNASTDVNSMTLSSEHSFTPPSSTDQNDLSSMTGEEYREDNGNSAECNSSIETDMTVLREPYREENAEGPFNPSPGPAIESDEDTVPPREKDASSVVISITTSSEHPSTTPSSSDRNELPSMNGEENQEDNGSSAECNSSIETDMTVLRESYRDDNAEGPSSPSPAPTFESDEDTVPQREKDASSDVDSMTPSSEHSSTPPSSTDENCLPFMPGEENQEAKGSSADSKSSIETDITVLEEPYRGDNREGPFILIPGPVIENDKDTEPPLNKDASTDVNNMTTSSEHSSSPPTSTGQNNLPFITMEEYREDNGNSAETKSSIETDMTMLEVPNRSENREGLFTLSPAPAIESDENTAPPRKKDASSYVNSKTTSSEHSSTPPSSTDQNYLNSMTGEEYQEENGSSADPKSSIETDMTALEDPYRSDNREGPCILSPAPAIKRAEDTVQPRENDASTDVSRMTMSSKDSCSPHSPTDQKDLPCMNGKEYQEDNSSSAESKCSIETDMTVLEVPYRGDDLEGPFTLSPAPAIECDEDTVSPREKDASSNVNSMTTSSEHFFSLLSSTDQNDLPFMTEEENREDNGSSAECNSSIETDTIVLRELCRDENAEGPYNLSPGPAIKSDEDIEPQREKDASTDVNSMTTSLKHSSTSPFSTKLFLLPFTTPKRCREDNGDERRRTVWKSKECFENQERVLKVTLLASEWSSSMGGLSTINRQLAILLGKRKEEVSVTFLVPQFACSEEEKRCARSQNVFVREAEKRPAFSNSLDWLNFPPTDLDIDIVLGHGAKLGKQAQIIRVNRGCKWIQVEHTAPEELGIHKEYDMAISKGEEKKEDEVELCKLADAVAAVGPKLTRAYSSYLRSSEKHQHIIQLMPSTFSEFSNVKQATNEMKEFKVLTFGRGDPEDFSLKGYDISARAIAELRDKSYRLILVGAPEGKQDEVAEKLLKSGISKNQLTVRKFVQSKDILKELFCEVDLCIMPSRTEGFGLTALEAMSAGLPILVSSNSGFGEALCTISSGESFVVESEEPKEWAKAIDGVRQKKRAHRLKEIQQLRAAYEEKFSWEILCDTLLNKMRELVNEARHIREERQTAPICQSSLSVKRLEYVKRSEHRSHLTNGFQYKESSGAEWKTSCVTDNTALKKPHCGENAPGLFNRNPGQTAESEVESVLPRKNDASPFVNSMTSSSEHSFTPPSPTEQNDLPSRTRKEYREGNRRVVCMYDNNHYETQDADLKSSSERDIPELEVQAIESDEDTLPPGQKDVSVRINSMSLSPEHLSILPSSTYQNNLPFTRTTRKGYPEESGEIGCMYNNDQCETQEADRPLFLSINEKFYCVLFSVDDNVFSSAFKSIPFSGADLIIIQRQKKWSEENLKDTLRKMCGLNTRLKKTNYIIVVREKDESLTQTLEECTPGGKAYTMYVAWSRRPVKAGSGLTDVVEKNCVIFVGPPSKSATNWFVAETEQDFMRHIIKLFAPPGGVVLEFDNSDAQVSSCLINTIGSMECEPATLI"
misc_feature 107..>1324 /gene="LOC111332102" /note="transcriptional regulator ICP4; Provisional; Region: PHA03307" /db_xref="CDD:223039" misc_feature 2252..3385 /gene="LOC111332102" /note="phosphatidyl-myo-inositol mannosyltransferase; Region: GT4_PimA-like; cd03801" /db_xref="CDD:340831" ORIGIN
tgtaccacgttatcttctgaactcgatctcagttgctgttgttagactctgggccaaattggtagcagttgcagaaactctgcgcttctacaccgcaatgatgtttgacccatttaacccaagcccagaaccggctattgaaagtgatgaggatactatgtcaccacgtgaaaggaatgcctcaaccgatgttaacagcatgaccttgtcatcagagcactcgtttactccgccttcctctactgaccagaatgacctgtcctccatgactggggaagagtaccgggaggataacggcaatagtgcggaatgcaatagctcaattgagacagacatgacagtgttaagagagccctaccgtgaggaaaatgcggagggaccatttaacccaagcccaggaccagctattgaaagtgatgaggatactgtgccaccacgtgaaaaagatgcttcaagtgtcgttatcagcataaccacatcatcagagcacccgtccactacaccttcctcaagtgaccggaatgaactaccctctatgaatggggaagagaaccaggaagataacggcagcagtgcggaatgcaatagctcaattgaaacagacatgacagtgttaagagagagttatcgtgacgacaatgctgagggaccatctagcccaagcccagcaccaacttttgaaagtgatgaggatactgtgccccaacgtgaaaaagatgcctcaagcgacgttgacagcatgaccccgtcatcagagcactcgtccaccccaccttcctctactgatgagaattgcctaccctttatgcctggggaagagaaccaggaagctaaaggcagtagcgcggactccaaaagctcaattgagacagacataactgtcctggaagagccctaccgtggcgacaatcgtgagggaccatttatcctaatcccaggaccagttattgaaaatgataaggatactgagccaccacttaacaaagatgcctcaaccgatgttaacaatatgaccacgtcatcagagcactcgtcgagtcctcctacctctacaggccagaataacctacccttcataactatggaagagtaccgggaagataacggtaatagtgcggaaacaaaaagctcaattgagacagacatgactatgctggaagtgccaaaccgtagcgaaaatcgtgagggactatttaccctgagcccagcaccagctattgaaagtgatgaaaatacggcaccaccacgtaaaaaagatgcctcaagctacgttaacagcaagaccacgtcatcagagcactcgtcaactccgccttcctctactgaccagaattacctaaactctatgactggggaagagtaccaggaagaaaacggcagtagtgcggacccgaaaagctcaattgagacagacatgactgcgcttgaggacccctaccgtagcgacaatcgtgagggaccatgtatcctaagcccagcaccagctattaaacgtgctgaggatactgtacaaccgcgtgaaaacgatgcgtcaaccgacgtcagtaggatgaccatgtcatcaaaggactcctgcagtcctcattctcctactgaccaaaaggacctcccctgcatgaatggaaaagagtaccaggaagataacagtagtagtgcggaatcaaaatgctcaattgagacagacatgactgtgctggaagtgccttaccgtggcgacgatcttgagggaccatttaccctaagcccagcaccagctattgaatgtgatgaggatactgtgtcaccacgtgaaaaagatgcctcaagcaacgttaacagcatgaccacgtcatcagagcattttttcagtcttctttcctctactgaccagaatgacctcccgttcatgactgaggaagagaaccgggaagataatggcagtagtgcggaatgcaatagctcaattgagacagacacgatagtgttaagagagctttgccgtgacgaaaatgctgagggaccatataacctaagtccaggaccagctattaaaagtgatgaggatattgagccacaacgtgaaaaggatgcctcaaccgacgttaacagcatgaccacgtcattaaagcactcgtctacttcacctttctccactaaactgttcctcctgccctttacgaccccgaaaaggtgccgggaagataatggcgacgaacgtagacgaacagtttggaaatcaaaggaatgttttgaaaatcaagagagagtattgaaggtgactctcctagccagtgagtggagttcatcgatgggaggcttgtccaccataaacagacagcttgccattcttctgggaaaacgtaaggaagaagtaagcgttactttccttgtcccacaatttgcttgttctgaagaagagaagagatgtgcacgaagtcaaaatgttttcgtgagagaagcggagaagcgtccagcctttagtaattctcttgattggttgaatttcccaccgacagaccttgatattgacattgtactgggtcatggagcaaagcttggtaagcaagcccaaattatcagagtaaatcgtggttgcaagtggattcaagtggagcacactgcaccggaagaacttggaatacataaagagtatgatatggctatttccaaaggagaagagaagaaggaagatgaagtggaattgtgtaagttggcagatgctgttgcggcggtgggaccaaagttgaccagggcttactcttcctacctgcgctcaagtgagaagcaccaacatataattcaactgatgccaagcacgttcagtgagttttcaaacgtaaaacaagctacaaacgaaatgaaagagtttaaggttttaacgtttggccgtggtgatccagaggacttcagtctgaaaggctacgatatctctgcgagggcgatagctgaactgagagacaaatcatatcgtctgatcctcgtaggtgcacctgaagggaagcaggatgaggttgcagaaaaactattgaaaagtggaattagtaaaaatcagctgactgtgagaaagttcgtgcaaagcaaggatatattgaaggaattattttgtgaggtggacctctgtattatgccatctagaaccgaggggttcggcttgacggctctggaagccatgtccgctggtcttcccattcttgtcagtagcaactcaggatttggtgaagcactgtgcactatatcatcaggagaatcattcgtggtggagtccgaggagcctaaggagtgggcaaaggcaattgatggtgtccgacagaagaaaagagcacaccgacttaaagagattcagcaactgcgagctgcatacgaggagaagttcagctgggaaatattgtgtgacactctattgaataagatgcgggaattagttaatgaagcacgtcacattcgtgaggaaagacaaaccgcacccatttgccagagctctctctctgtcaaacgcttggaatacgtaaaacgctcagagcatcgttctcatctaaccaacggttttcaatataaggaaagcagtggtgctgaatggaaaacctcttgcgtgacagacaacacagcgttgaaaaagccccactgtggtgaaaatgctccgggactatttaaccgtaacccaggacaaactgctgaaagtgaggtagaaagtgtgcttccacgtaaaaatgatgcctcacccttcgtgaacagcatgacttcgtcatcagagcactcgttcactccaccttctcccaccgagcagaatgacctgccctctaggactaggaaagagtaccgggaaggtaatcgaagagtggtatgtatgtacgacaacaaccactatgaaactcaagatgcggatttgaaaagctcaagtgagagagacatcccagagttggaagtacaagctattgaaagtgatgaagatacactgcctccagggcaaaaggatgtttcagtacgcattaacagcatgagcttgtccccagagcacttgtccattctaccttcctccacttaccagaataacctgccctttacgcgtacgaccaggaaagggtacccagaagaaagtggcgagattgggtgtatgtacaacaacgaccaatgtgaaactcaagaggcagatcgccccttatttttgtccatcaatgagaaattttactgcgtactgttctctgtggatgataatgttttttcttcagcatttaaaagcatcccctttagcggtgctgatttaatcattatacaaagacaaaaaaagtggagtgaggaaaatttaaaggatactttaaggaagatgtgtggcctgaacacaagattgaagaagactaactacatcattgttgtgagagaaaaagatgaatccttaacacaaaccctggaggaatgtacccccggagggaaggcttacaccatgtatgtggcctggagtagaagacctgtgaaagctggctccggactgacagatgtcgttgaaaaaaattgtgtcatttttgttggcccgccttcgaaaagtgctacaaattggtttgtggctgagactgaacaagattttatgcggcacatcataaagcttttcgcgcctccaggaggggttgtcttggagtttgataattcagatgctcaagtgagctcctgcttaattaacaccatcggttcaatggaatgtgaacctgctacccttatatgatgacgaaaggcctgtttctgcgtttaggagagaagctgaagccgcgacccacacaggagtagagaatttttctggcaagacgtttgtgatgtagatttacaatcacctccaataattcttgaagtgaaggttccgaatacatcagtggggttaacccttagctataaaacggtaaacaaagttagctgttagacgtaaagattgacaaatgttaaccgttcgttggagaaaaagtttaccgtagttttttttttattttaaaggtaacgtaaataaatttgttagcagtaaggtggccaaaagtttcactgataaccttaaaagtcatcaccctattaagaccctcttattaaacaatgtttgatacgtatttgcactcatgagtaccactcgagtattatgaagacatttccacggacccagtttagcttataatgtttgtaacatttcgtccacgtgattgagtattaaa
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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