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Previous release (v1)
2025-11-03 06:47:19, GGRNA.v2 : RefSeq release 232 (Sep, 2025)
LOCUS XM_022452009 406 bp mRNA linear INV 14-SEP-2017
DEFINITION PREDICTED: Crassostrea virginica uncharacterized LOC111113719
(LOC111113719), mRNA.
ACCESSION XM_022452009
VERSION XM_022452009.1
DBLINK BioProject: PRJNA379157
KEYWORDS RefSeq; includes ab initio.
SOURCE Crassostrea virginica (eastern oyster)
ORGANISM Crassostrea virginica
Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Bivalvia;
Autobranchia; Pteriomorphia; Ostreida; Ostreoidea; Ostreidae;
Crassostrea.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NC_035788.1) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Version :: Crassostrea virginica Annotation
Release 100
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 7.4
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
##RefSeq-Attributes-START##
ab initio :: 19% of CDS bases
##RefSeq-Attributes-END##
FEATURES Location/Qualifiers
source 1..406
/organism="Crassostrea virginica"
/mol_type="mRNA"
/isolate="RU13XGHG1-28"
/isolation_source="Rutgers Haskin Shellfish Research
Laboratory inbred lines (NJ)"
/db_xref="taxon:6565"
/chromosome="9"
/tissue_type="whole sample"
/geo_loc_name="USA"
/collection_date="22-Mar-2015"
gene 1..406
/gene="LOC111113719"
/note="Derived by automated computational analysis using
gene prediction method: Gnomon. Supporting evidence
includes similarity to: 84% coverage of the annotated
genomic feature by RNAseq alignments"
/db_xref="GeneID:111113719"
CDS 71..406
/gene="LOC111113719"
/codon_start=1
/product="uncharacterized protein LOC111113719"
/protein_id="XP_022307717.1"
/db_xref="GeneID:111113719"
/translation="
MTSIVEDINDRHMKPWAEACQRDGIDNTPLNPFIDQELLYNKNLSLDSAKLKGTGFTYSIPELKIDSLREILDDYIKCGLFPRSLLSAEMLWNCEAEHEETEEILANQNGS"
ORIGIN
ctgccatctgcatgattgaggacgagtttgtgagattgaacttgtgttgtttaaaggaaaacaggtcaacatgacctccattgtagaagacatcaatgatcgtcacatgaagccctgggctgaagcttgtcagagggacggcatagacaacacgccgctcaaccccttcatagaccaggaactgttatacaataagaatctatctttagacagtgccaaactcaaggggactggatttacttatagtataccagagctaaaaatagattcactcagagagattttagatgattatatcaaatgtggactttttcctcgatcgctcttatcagcggaaatgttgtggaactgcgaggctgaacatgaagagacagaggaaattctagctaatcaaaatggttcctag
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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