2024-04-26 19:06:19, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_022314076 3037 bp mRNA linear INV 11-AUG-2017 DEFINITION PREDICTED: Myzus persicae uncharacterized LOC111033379 (LOC111033379), transcript variant X1, mRNA. ACCESSION XM_022314076 VERSION XM_022314076.1 DBLINK BioProject: PRJNA397782 KEYWORDS RefSeq. SOURCE Myzus persicae (green peach aphid) ORGANISM Myzus persicae Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha; Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Myzus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_019102916.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Myzus persicae Annotation Release 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3037 /organism="Myzus persicae" /mol_type="mRNA" /strain="clone G006" /db_xref="taxon:13164" /chromosome="Unknown" /sex="female" /tissue_type="whole body" /dev_stage="adult (asexual female)" /collected_by="Alex Wilson" gene 1..3037 /gene="LOC111033379" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 37 samples with support for all annotated introns" /db_xref="GeneID:111033379" CDS 186..1280 /gene="LOC111033379" /codon_start=1 /product="uncharacterized protein LOC111033379 isoform X1" /protein_id="XP_022169768.1" /db_xref="GeneID:111033379" /translation="
MMEIDEDLSAIEIETDPILPEVSSESFGDISCITNDDNEKENIEDPHSIETDESDQEDVTMSGSESGIVEDFTFDPTAFIEISDILDLVGKNWSIFRVSPLWNLNFDANYLNLLSKKLKKFLINRLSNNMKNRKNSFSDISVEIEAKEANQECIALKIYVTNNDTNSTLYTGLLLKSPNYNQNYDKNSLSDMPILMVQGNKSFSIAIHNWLTEHFDCVIRPYEFALYQFLWLIAISMCDAGQLYNETVLYHYLYKCESSKGQMDVKCYAESEFLRSVLAKLSMNRSSSEATSFHYSDLIKVQSDIEDHFKITSGINVSKLKLKAFEAPKVASINVSGKIHVWSSTLIDLMLKYLMELQDNKCMP"
misc_feature 762..1154 /gene="LOC111033379" /note="Kinetochore complex Sim4 subunit Fta1; Region: CENP-L; pfam13092" /db_xref="CDD:432969" ORIGIN
cggttgataagtactatctacaaccgtcatttaaacacaaatacaaacaataaataataatcaacattcagcattcaagcattgcaaatttgaaatttaatttttcaaaacagaaccactttagcacagtatacaataattaacaataatctgtgcaataaagtgcctcatataaatactgactaatgatggaaattgacgaagacttaagtgctatagaaatagaaacagatccaattttgccagaagtatcttcggagtcatttggcgatatatcctgtataactaatgatgataatgaaaaagaaaatatcgaagacccacattcaattgaaaccgacgaatctgatcaggaagatgttacaatgtcaggatcagagtcaggaatagttgaagatttcacttttgatccaactgcttttatagaaatatctgatatactagatcttgttggtaaaaattggtcaatattccgtgtatctccattatggaatttgaattttgatgcaaactatttaaatttgttatccaaaaagttgaagaaatttttaataaatcgtctatctaacaacatgaaaaaccgaaaaaattctttctcagatatctctgtggaaattgaagcaaaagaagcaaatcaggaatgtattgcattaaagatttatgttactaacaatgatactaattcaacactttatactggtttgctattaaaatcaccaaattataatcaaaattatgataaaaatagtctatctgatatgcctatattaatggtacaaggaaataaatcattctcaatagccatacataattggctaactgaacattttgattgtgttattcggccatatgaatttgctttgtatcagtttctgtggcttattgctatatcaatgtgtgatgcaggacaattatacaatgaaactgttttataccactacctctataaatgtgaatcatcaaagggtcaaatggatgtaaaatgttatgctgaatcagagtttcttcgatcagttctagccaaactttccatgaatcggtcatcttctgaagctacttcgtttcattattcagatttaattaaagttcaatccgatatagaagaccattttaaaattacaagtggaataaatgtatcaaaattaaaattaaaagcattcgaagcgcctaaagttgcttcaattaatgtttctggaaaaatacatgtttggtcatccacacttattgatttaatgttaaaatatcttatggaactgcaagacaataaatgtatgccttaaaaaattaatttaaaaagtatgcaatatttacatttgttataaatggttttcgagcatactaaattgtaaatactaatactttttattattattttattatctgatagaattaaagttatgtttttatataaatcaaaaactgtatttttcaatttttactaaacaattagccaatttttttttactctttgaaacaagataattacatactataggtatgcccactataccatcaatggactggccgctttgtaacacattgatcaagtcataacaaaagttaactagacctgatttttactaatacacaatctatttcatatatatttctatggttttcactttagtatgtgcgttataataattttataacaaataaaaactactttcgttctactctaactgatgacagaataactttcagcaacgtttacaacataataattgatttcaaatgtatatttggcactcaatagtgcgcataaatcctaagcccaccaataattggcattgtaatgcagttaccagtcgagaggatgtcatgcatgtgttgtctccttactaacattaaatttgagttcagcagaaccaattctttgttgtctgcttaaatactagaatgaatatcaaaattaaaggtaagaacatttaatctgtgagcattttgaatttgtgatatttcacacacatagcttgctaaaaatattaaaatattaattattttgtataagctaatatacaattggttctgttgaattcaaatttttgtttatgcttttgtaagacagagactacatacatgggtagcgtctattaaccttcagttgcatactttattacataaaaaatgagttacaagatgtgttgggtatattcagttaaatacatcgagtatcaaacattaaaacactagcattatttatttgaaaaccaaattttaacaaatgaaattgaatagcatataaacaagggaataagtatttcatgagtatcttaatagctattttaattaccttaaaaatagtttttcaaaatttaatagagattaaatatatattgtgactaacttgtacatcaatcaaattaatataatgaggcatattaaattataagatctaagggcattgaatgattaacaatacattattcagtatttacacagtgtttataaaatcattaatttataaacataaacaattaaaaccatagtgatgattatgcgttcagtatcaaaagttaaattaaagtaaatacaatgtgtaattataaccatattataaaaaattaattttcattatttaaatttcaatggcaacataaaaaaaatcaattttccatgttaagttgattatttgagtttaaaaagatagttattattagtaaaatacattaagtgtacactttcaaactttgaatactgatcgcgtgtttaagataatataaatatagtaaaacagttatattctaacaaacaaaacttttaagaataaataaattaagttcctaacctaagggtaaacataaaaattaaataaggtaattgtaatatagaactatagaagtaaagtgtataagaatattttttttaatcatttatgggttatacatttatgacttaaaatcgtttacaaccaatatcattatataagtaccaatatgtaatataattatataaatagatatattcgcaacactaatttcaatgatatagagcttggtctattaataaatattgaatacaattcactcaaaaaaaa
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]