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2020-04-07 22:47:47, GGRNA.v2 : RefSeq release 99 (Mar, 2020)

LOCUS       XM_021939353           12243 bp    mRNA    linear   PRI 20-NOV-2019
DEFINITION  PREDICTED: Papio anubis argonaute RISC component 1 (AGO1),
            transcript variant X5, mRNA.
ACCESSION   XM_021939353
VERSION     XM_021939353.2
DBLINK      BioProject: PRJNA576697
KEYWORDS    RefSeq.
SOURCE      Papio anubis (olive baboon)
  ORGANISM  Papio anubis
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Cercopithecidae; Cercopithecinae; Papio.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_044976.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Nov 20, 2019 this sequence version replaced XM_021939353.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Papio anubis Annotation Release 104
            Annotation Version          :: 104
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.2
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12243
                     /organism="Papio anubis"
                     /mol_type="mRNA"
                     /isolate="15944"
                     /db_xref="taxon:9555"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="whole blood"
     gene            1..12243
                     /gene="AGO1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 mRNAs, 302 ESTs, 5 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 14 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:101004595"
     CDS             142..2271
                     /gene="AGO1"
                     /codon_start=1
                     /product="protein argonaute-1 isoform X5"
                     /protein_id="XP_021795045.1"
                     /db_xref="GeneID:101004595"
                     /translation="
MPHRVGACARGTSSLPVPARYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWKMMLNIDVSATAFYKAQPVIEFMCEVLDIRNIDEQPKPLTDSQRVRFTKEIKGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLESGQTVECTVAQYFKQKYNLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLMKNASYNLDPYIQEFGIKVKDDMTEVTGRVLPAPILQYGGRVSRNRAIATPNQGVWDMRGKQFYNGIEIKVWAIACFAPQKQCREEVLKNFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINVKLGGINNILVPHQRSAVFQQPVIFLGADVTHPPAGDGKKPSITAVVGSMDAHPSRYCATVRVQRPRQEIIEDLSYMVRELLIQFYKSTRFKPTRIIFYRDGVPEGQLPQILHYELLAIRDACIKLEKDYQPGITYIVVQKRHHTRLFCADKNERIGKSGNIPAGTTVDTNITHPFEFDFYLCSHAGIQGTSRPSHYYVLWDDNRFTADELQILTYQLCHTYVRCTRSVSIPAPAYYARLVAFRARYHLVDKEHDSGEGSHISGQSNGRDPQALAKAVQVHQDTLRTMYFA"
     misc_feature    214..360
                     /gene="AGO1"
                     /note="Argonaute linker 1 domain; Region: ArgoL1;
                     pfam08699"
                     /db_xref="CDD:337161"
     misc_feature    361..723
                     /gene="AGO1"
                     /note="PAZ domain, argonaute_like subfamily. Argonaute is
                     part of the RNA-induced silencing complex (RISC), and is
                     an endonuclease that plays a key role in the RNA
                     interference pathway. The PAZ domain has been named after
                     the proteins Piwi,Argonaut, and Zwille; Region:
                     PAZ_argonaute_like; cd02846"
                     /db_xref="CDD:239212"
     misc_feature    order(517..519,562..564,604..606,616..618,670..672,
                     691..693,697..699)
                     /gene="AGO1"
                     /note="nucleic acid-binding interface [nucleotide
                     binding]; other site"
                     /db_xref="CDD:239212"
     misc_feature    856..2142
                     /gene="AGO1"
                     /note="PIWI domain, Argonaute-like subfamily. Argonaute is
                     the central component of the RNA-induced silencing complex
                     (RISC) and related complexes. The PIWI domain is the
                     C-terminal portion of Argonaute and consists of two
                     subdomains, one of which provides the...; Region:
                     Piwi_ago-like; cd04657"
                     /db_xref="CDD:240015"
     misc_feature    order(1276..1278,1288..1290,1324..1335,1342..1344,
                     1366..1368,1375..1377,1387..1389,1399..1401)
                     /gene="AGO1"
                     /note="5' RNA guide strand anchoring site; other site"
                     /db_xref="CDD:240015"
     misc_feature    order(1480..1482,1486..1488,1696..1698,2110..2112)
                     /gene="AGO1"
                     /note="active site"
                     /db_xref="CDD:240015"
ORIGIN      
ggctagccattgtgagctggcgaatgctgcatgaggccctggtcagcggccagatccctgttcccctggagtctgtgcaagccctggatgtggccatgaggcacctggcatccatgaggccagggctcctccgtgcccaggatgcctcacagggtgggggcctgtgcccgagggaccagttctctgcctgtccctgccaggtacacccctgtgggccgctccttcttctcaccgcctgagggctactaccacccgctggggggtgggcgcgaggtctggttcggctttcaccagtctgtgcgccctgccatgtggaagatgatgctcaacattgatgtctcagccactgccttctataaggcacagccagtgattgagttcatgtgtgaggtgctggacatcaggaacatagatgagcagcccaagcccctcacggactctcagcgcgttcgcttcaccaaggagatcaagggcctgaaggtggaagtcacccactgtggacagatgaagaggaaataccgcgtgtgtaatgttacccgtcgccctgctagccatcagacattccccttacagctggagagtggacagactgtggagtgcacagtggcacagtatttcaagcagaaatataaccttcagctcaagtatccccatctgccctgcctacaagttggccaggaacaaaagcatacctaccttcccctagaggtctgtaacattgtggctgggcaacgctgtattaaaaagctgaccgacaaccagacttcgaccatgataaaggccacagctagatccgctccagacagacaggaggagatcagtcgcctgatgaagaatgccagctacaacttagatccctacatccaggaatttgggatcaaagtgaaggatgacatgacggaggtgacagggcgagtgctgccggcgcccatcttgcagtacggcggccgggtgagcaggaaccgggccattgccacacccaatcagggtgtctgggacatgcgggggaaacagttctacaatgggattgagatcaaagtctgggccatcgcctgcttcgcaccccaaaaacagtgtcgagaagaggtgctcaagaacttcacagaccagctgcggaagatttccaaggatgcggggatgcctatccagggtcagccttgtttctgcaaatatgcccagggggcagacagcgtggagcctatgttccggcatctcaagaacacctactcagggctgcagctcattattgtcatcctgccagggaagacgccagtgtatgctgaggtgaaacgtgttggagatacactcttgggaatggctacacagtgtgtgcaggtgaagaatgtggtcaagacctcacctcagactctgtccaacctctgcctcaagatcaatgtcaaacttggtggcattaacaacatcctagtcccacaccagcgctctgccgtttttcaacagccagtgatattcctgggagcagatgttacacaccccccagcaggggatgggaaaaaaccttctatcacagcagtggtaggcagtatggatgcccaccccagccgatactgtgctactgtgcgggtacagcgaccacgccaagagatcattgaagacttgtcctacatggtgcgtgagctcctcatccagttctacaagtccacccgcttcaagcctacccgcatcatcttctaccgagatggggtccctgaaggccagctaccccagatactccactatgagctactggccattcgtgatgcctgcatcaaactggaaaaggactaccagcctgggatcacttatattgtggtgcagaaacgccatcacacccgccttttctgtgctgacaagaacgagcgaattgggaagagtggtaacatcccagctgggaccacagtggacaccaacatcacccacccatttgagtttgacttctatctgtgcagccatgcaggcatccagggcaccagccgaccatcccattactatgttctttgggatgacaaccgtttcacagcggatgagctccagatcctgacgtaccagctgtgccacacttacgtacgatgcacacgctctgtctctatcccagcacctgcctactatgcccgcctggtggctttccgggcacgataccacctggtggacaaggagcatgacagtggagaggggagccacatatcggggcaaagcaatgggcgggacccccaggccctggccaaagccgtgcaggttcatcaggatactctgcgcaccatgtacttcgcttgaaggcagaacgctgttacctcactggatagaagaaagctttccaagccccaggagctgtgccacccaaatccagaggaagcaaggaggagggaggtggggtagggaggagtgtaggacgccttgtttccttctgtagaggtggtgtaagagtggggaacagggccagcaagacagaccaccagccagaaatctctgatatcaacctcatgtcccctacccctcaccccatcttgtcacatctggccctgaccccaatggaccaaaaggggcagcactggtgcccaccatacacacaggtgtctcatgtgactcacagtgctaaagactcatgcttgacagcttggtaaggtcaactctgtagccctgcagacaaaagctggttaggtttgggtttgatactttagatgggaaagtgaggggcttgagaaagtgggtgggaggagggaaggattttttaggagccttaatcagaaaaggactagatttgtttaagaagaaaaatgaaaccagacccagatcaatattttaggatactagatgttttaatgggttcagaatccagtttgtaggaagattttttaatggttttggttgctcctcccccagctgccatccccccttccccttattcctctctgtccacattttctgccccaccttacttctcctccctgacagacatccagcccctagtaatacttaaggcactatggcacttagctttgaagtgacacgaccctgtcttccttccgcccgctggtgggtaaccagtgccttccctgtaacggtaatgctgcagaactgcaaccttttgtacctttctttggggaatggggtgggggtgggagaggaggtagatggggaagaagtaccccagacccaacaaacctccagccagaaagccagctattttgcatttgaaggaattgacttcctcattcattgagctttttaaaagatcacaacctcaagatggttaaaatccattgacatttgcactttcaaacatgacaagtctcggagctgctgagatgactggcccctggcctttccacttatgcctccttttctccttgttcctcctacctcccaccccacccaggtctggagttactttcatagcatttttcactcttggcttcttttctcccttgatggtcaagtctcttgtgtttcaatatttcttaactggggtgtcttataacaaaaaactcttaggtctaaaatgagaaaaaagagagaaaacaaaatgttatttttataccataacttgagtgtattgccaaaatttggaaatccttcccatgcctgatgagtttatatcccggaaacattgagccatcagaatgaactgtgtacctgatttgttctctgacctggctaggtagggagggggtggttatcaccccaagatggggtccgggctccatccttcctctgtgcagataatacctttctcttgctgtagcctccctcctctgcactgtcctgcactctttcttgcaagtgcatctttttccttcctctggactgtcctctgaccctttggctcatcctagattccagtgtgtcctgtggacaggctggggaattttgctgctccctattgcttctgtttacacaaatgaatttttcctggtttcccactagggcatgtgagtgggtggcatgagctttttttcttctttttgtcttgagacatggggtttggctgtcttgcaggactggagaaggtggtggttctagcttggtctctgctggccttgaagcaagcatccccccctgccctttttccttgactgttcatttttttcctgccccaccgcttgggatggggagttgcaacttcagtgtggaatttcctctttttgaggagcctgggtttggatctatctgatctggtgatgaagccatgattactttagacctagcccaggcttggaggccagctggaggcaggagggtctaaatcctggcctatagagttagaactaccgtttcctctcctcagctgcccttgtatgacccggatttgctatgcaaaacaatctgtcccaggttctgttctggttggctacattgttcagcaactcacaaaacgtagcacaaacattcattatggagaaagcatcaggactgttgagtaactcctcctttacttttttcctgctggctacagcatggggtgccctataggcacaagcccagctgaagaacagaatggagggctctgggaggaggcagctcactggagagcctacattccttacacaagtgcctaaagagagtgatgctaacactccatctgccctgtccattgccttcatatacagtctacttcgtgttctgtcaccctttggggaggggagctcttctgggacagtgggctctgcatgttctctacttgggtacattttggggctaggatcagggcactattcctggagggtccagtcattcaccagcatttgcaaatgtccatagggagcaggtggcagcctctactcccagcaacaagtttgtgttctctccttttctctctttgcctcactctctccagttggttatcagctggggcttgagcttgaaatgcatttttagccctttggcatggcatatgccattcaagaaataaaaaagcaagagaatcagctttgggcaatgacaagaaatgacttcttactctgatttttttgtaaaaaaataatttttgagacttgaaaaataaccctgaccttgaggattattcttgtttgaaaggtggtggatgcagatggagaagtggtgttggcagcaagctttggctcatgtggatttggtttaagtggtgcttcttacccaagcttcaaggaagtgcttgggggacccccagcctcatcctcttagatgggtctcttgctccctttgtaccactgttttgccttccttttcctcttctctttttccctggcttcctttcccttttctactattcactctgcttgcttgctggccggcctgcctgcctgcctgcctgcctgcctatgtgataatgaaatctctgcatggctgcaatgatcccactgttagctggcaaggtcaggcttagctccttgactgcagacgaccaagaacctgttccccaagcccagagatgttcacctgggctggactgccctcaagcttatactagagaagagcaactgacctgcccaacttgtgtgaagtcaggagggtttctggcattttccacacctgtccactccttggagctggtttctctcattgcttttactaaatctggttctttttctctttacctggggcctgccttttctgagattgtcttagggttgagctacttgggtatcctgggcttgagtgttaggggatggacataagggaaagagtgatgagaagagaatggagagaatttgaataaaaggtgggaaaggagagagccctgttctttgattgtttatccagtccaacctgatccattagggattgaggtgctacactggcctccagggataagcctggggctattgttgctgggaacttatgcttaacataaagccgaagaagaaggtacctagaattttgaaacttccctaaaaagctcctaatgcccacctgctagatagcttctctgtggcctcctatttagctaagcagcagtgtttttggatacttctcttcttctgtttgtgaataaggccagcactcaagatgggcagacaagggcacgctattagctggcccataggatatctgtaaggctggtgggacaattttggacctggaatcctgtgaactaacaaggttggaagtttcttccccttcagggtagaaaaatcatctcaaactaaccaaaaggcagttttggaaactacattgggggaagttatttttatttatatatggggcctaggccaatccaggatggtagctggaataccttccttcttaaaatctgatcatggcagggatatgcagggcactttttactatttggccttctaagcagattgggaaggaggtattttctggttttctctttcctccaacttaataggacttgccttctccctgggcagggagagaggctgggttggtgctctccccttactctactcacactgacttagaacctctggctgctgtttgggcatccaagaaagggaggggaaggaatgagctaaaaacaaaacagaatgaggtgggaaagggagatttccttctctacagaggaaaataggaaaccctccaagaattgtgcaagtaaagacattcgtcaaatgtactgagtcccttggtgtagtagcaataaggaaaaatgaaattactttcctgtgcacacagtccagcctaattggtgtgtgatgttgcacttagcagccatgtggtgggcatgtgtgactactctgggtttcactttagtttctaaactttttatccctctcaagtccagcatggatggggaaatgtctctggatccccacagctgtgtacttgtttgcatttgtttccctttgagacttgtgtttgtgtcctgctttgagctgtaccttgtccagtccatcgtgaaactatcccagcagctgtaatgtacagttccttctgaagcaagcaacagcagcagcagcagcagcagcagcagcacaattctgtgttttataaagaacagtggcttctatttctgaagtgcggtctttctctttttttcctaccagcaaaacaaacttttgggactgattacatctctaatagattttaggtgagaataatactgtagattgttatgcaggaatacttcacagggcctccatttattcttcattcaacaaacatgcaaagtactgtgccagcagtattgtggggagggcaggcacaattcaaaatgaggaaaatagtgtctgtctcattaagggaattaagtttggtgggggatatgactagccaactggtcccctggcataggagaaagataatgagggagtggaataagactatagcaacgaatatagggaggaagggacagatttgagagacaagagatagaattagtaggactcgatggctggtggaagacaagagtagaggttagctcccaggtttctccttgagcataggagtgtgttgggacattctgccagtcaagatgggggtggcagggggagactgtagaaggaaggtggggagttttttgaagaaagacaatgttgtgtagactgagttttgaggtttttttggggcaataagggtaaggtgtccagtaaacacaggttggtgctcaggtaagactaaaactgcatttatggatatgggagtcatatagatggtagttaaagccataggcatgaacaagttagcttaggaaaagagaagagaaacatagtatacaaccccctaagaaactcagtttaaaggatggggcaaggaagtagatcttaaggtgacagatcactggtagaaagcttgtgggttttttgtttctttgtttaaccagtttagtgaggtaggagaagaaatcagagtagaagtttcatgaagggtgtgattaacaacatgaactgctgcagagaaggagttcttttttttctgtgtgttttacctttctgctccccatctgttggggatcttataactctatgacctacttaggttattctccagtatttcttgaaaatgagcattggaaaaaccaattctaaaatggctaagactaggactttcaagttccccacaactaccaccaattaggagataattgtaaaagaataaacaaaacctaattttgttccagtgtactagataatagtagaatactatatttatttccataacttgtcttctttagagcctgtgaactcctaggagcagaagctatattctcttcatttttgtcatctcagggtcatggcatataccaacagatcagtatgtgcaaatagaattgaaataggctagtagtctgtagtttatgagtatgggctgggtgggcagcagatcaagaagtgataggagtacacaggatgaactcagaattcctgaaatctttaggtaagcagatacttaaccagattatcattgtcttttcccactcaccccaaattggaggttttatggttttgtactttaagctggtggtataattgtcaagcatgtaaattctggcattcttcctggtactgctagagcattgttatttcaatgcatgggggtaagaaggctcagagaaggattctggcagagggcccagtgagaaatcatcagtggtagccagtgtgtacatacgttgacctagcattcctctggaggccaagtgttgtgaattggcctgtggctatcacctggcagactcccttgggaaagagctagccagccccatgcttcttttcagcagcaagggttagggaggttggttgaacttgaagagcagattagacatggagcagattttgcccagttgaaataagacatatatttatgaccccgagtgaggcagaaataaagtacttagcagggggaatgggaggatgatgattatggcaaattttgctataacctttagttttagaaaagattgatactgaaaagccttcaggatttgcctgtggttgctacttaagttaaaaaagactgggagcctgcattgtctggtcctggagctcaaggttttcagtgaaggcctgtcctggcacctctgggcattccttttcattactagttgagcacccttccttctgctctgtcagttggcagaatactctggagcacattctggactagcagttgccttggggtagtcagcctgggtatttgtttggtatctcttggtgtagcagatcccagaatctcacggcaatttggatttggtggctaaaagaaagagttagtgcaaggaaaagactagttggaagttctgagtctgggccatccttaagctgctgtctactgcttgaatgggaagtaatgttgaattggaaaattagctcaccttttttgttcctagctttgcagacatttattcctctgatgataggctgagaaatgcctaggcaggcttagaaggcacacagagcatgacagaagtactctgtcaaagcagctgtgtcaagaaggaagagctggaaaagtggatatgctggggaattagccacatttagttttccacttacgcacaactgccttctccagtatatcatagaagggttttttaggcctttgtggcttaccctgcaggaacatactatcctgttgttctggactgtagcaccttcaccaccatcctcttggcaatggttttttgttttggggtttttttttttttttttttttgacaaagtataatattgagggacctttttagggagcctttgatcctttgtccccattttccaaaggcagggaactttcctcttaaaagagacagtgggaacttttagccaggtttttggaaaaggcctgtgagctattaatgagagtgagctgcaaaaggaggaagggtttgtttgggtgctttgaagtacttggctaggtgttttctacagtatcttatacaattgcatcttacagcatctttacatgcaaaatagtttatcagttatcttcaattgcatattacaaaattctgattaaatttttcttaaataagaaaactatcatttcatatgacaagaaagcctaatttaatgttactccaaggttggttaattcagtggctcagtgataacaccaaagaattagtttcttgaaatctttttggtctgccatcctccatgttgtttatccttacgccagttcgcctcatggtcccaaaatggctactgtaattccgggaaggaaatgctgacagaaccatgcctggcaaaagagacaaatttttccgtgtccttctaaagcaaggaagtcttttcctggaagctccagcatatccggcctcatggctttgctagaaatgggtcatctcactcctgtcattggcaaagcaagtaagatcatccatcatgagtggcttagatgaatgaattatcctttgagtcacgtagactagaaagtccagtcatgtctaccagcaagaaaggagataagggctattggataagcagcgtctggtctcaaaggtacttcaacttttacagatgagaaacatgaatctgaatgactttcctaggctcacagcaagagagggccttcagtgttagctgtgtctgtccctaaagcccaagttttatattgtatcttgctacagtgtaaagtaacttactttctaccttgtggaaactgatggtctaggacaagagatttgaactcaggtgcccaggtgactctaatcttggcccatgtgagaagattctactgagttgctgtcctcatccagtgatgtttcttgtctcacacaagaagcctaggagtagaaagtcctaagtggagtagaataatagtggcagcagggagggaagtgtgcactgtgtgtccctgagcctgacttactgggcaggaacttggcgcttaaagtggcagctggccaccctgtctttcctgcatgcactgagtatttggtagctgattatgcctttccttagtgaccagtgatattgatcatcttttcatgtgcttacttactatccccgtatctttgttgttcacatcttttacccattgtatttgttgtttttgagacagtgtctcactctgtcacccaggctggagtgcagtggcacgatcacggctcactgcagtttctgcctcctggtctcaagcagtcctcccacctcagccttctgagtagctgggcttacaggcatacactgccatgcccagctaatttttttaaaaaaaaattttttttggtagcagttcggtctcattattactgcccaggctggcctctctcagcttcaagctatcttcccgcctcggccttccaaagtgccggaattacaggcataagccactgggcccagcctcttttacctgtttcaaaattgagttttattgagttgtaagagttctttattcattttaaacacaagtccattgttggttatatcttttacatctatttttcccagtctggcttgccttttcattttgaagagcaaaagtttaaaatgttgtgaatttattaaagctccatttgttgcttttttcttttctagtttatacttttgtgtcatattttaggaaattttgcactgggtatttgatggctcctgaggaggttcaactttcagagggcactgatttctctgcacctgaaattttgtactatttctgtatttctttcttctcagaacaaccagtgtcaccaggtatgagggcagagttttagcttgtttgctgagccccattcttgaagcttatttatttattcatctatctatccatccatcaatccaacaaatatactgaatgctgctatgtgccaggcactggcactgttctaggtactggggcaatgggagttaaggtaatacccaatgaccctgctctgtacccttaagagcagactcacttggggatgagttatccaaaaatagggtgtacatgtagtcaggagagagcctcatacagctttgcctttggcagaatccttcaaacctctttgtcttcctacttcttgatattacaaatcatgagcctttcacatgcgttcactctaaagaggtgggttcctggatagcagaagtagatagaaaggcatcattgacatttattgagatggagtgaatcagagggtgtaaattctgctccgtcaatgtcgaaaaagactagccgatctcaagggttcatcactgtcaccatgtctattgtctattctggaagaagctgaagaagtctgcctttgtttagggaaccagttccagaatcagaggggttgaggatataaaagacccttgcacaagagttggtatttaccctgtcagatgctgctaccaagatttggattgtgtacagtcgaggattaaaaatgacttttaagat
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]