2024-04-24 02:35:10, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_021735524 5401 bp mRNA linear ROD 22-MAR-2021 DEFINITION PREDICTED: Ictidomys tridecemlineatus protein argonaute-3 (LOC101975928), transcript variant X1, mRNA. ACCESSION XM_021735524 VERSION XM_021735524.2 DBLINK BioProject: PRJNA714113 KEYWORDS RefSeq. SOURCE Ictidomys tridecemlineatus (thirteen-lined ground squirrel) ORGANISM Ictidomys tridecemlineatus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Ictidomys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_024405058.1) annotated using gene prediction method: Gnomon, supported by mRNA evidence. Also see: Documentation of NCBI's Annotation Process On Mar 22, 2021 this sequence version replaced XM_021735524.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Ictidomys tridecemlineatus Annotation Release 103 Annotation Version :: 103 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.6 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5401 /organism="Ictidomys tridecemlineatus" /mol_type="mRNA" /isolate="GS200" /db_xref="taxon:43179" /chromosome="Unknown" /sex="female" /tissue_type="liver" /collection_date="2010" /collected_by="Sandy Martin, University of Colorado, Anschutz Medical Campus" gene 1..5401 /gene="LOC101975928" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 49 samples with support for all annotated introns" /db_xref="GeneID:101975928" CDS 358..2238 /gene="LOC101975928" /codon_start=1 /product="protein argonaute-3 isoform X1" /protein_id="XP_021591199.1" /db_xref="GeneID:101975928" /translation="
MCEVLDIHNIDEQPRPLTDSHRVKFTKEIKGLKVEVTHCGTMRRKYRVCNVTRRPASHQTFPLQLENGQTVERTVAQYFREKYTLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLVRSANYETDPFVQEFQFKVRDEMAHVTGRVLPAPMLQYGGRNRTVATPSHGVWDMRGKQFHTGVEIKMWAIACFATQRQCREEILKGFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVIKTSPQTLSNLCLKINVKLGGINNILVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPSRYCATVRVQRPRQEIIQDLASMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFRQVLYYELLAIREACISLEKDYQPGITYIVVQKRHHTRLFCADRTERVGRSGNIPAGTTVDTDITHPYEFDFYLCSHAGIQGTSRPSHYHVLWDDNCFTADELQLLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHVSGQSNGRDPQALAKAVQIHQDTLRTMYFA"
misc_feature 358..699 /gene="LOC101975928" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(493..495,538..540,580..582,592..594,646..648, 667..669,673..675) /gene="LOC101975928" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 832..2109 /gene="LOC101975928" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1243..1245,1255..1257,1291..1302,1309..1311, 1333..1335,1342..1344,1354..1356,1366..1368) /gene="LOC101975928" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(1447..1449,1453..1455,1663..1665,2077..2079) /gene="LOC101975928" /note="active site" /db_xref="CDD:240015" ORIGIN
atatacgcctgtggggcgttcctttttctcagctccagaaggatatgaccaccctctgggagggggcagggaagtatggtttggattccatcaatctgttcgacctgccatgtggaaaatgatgcttaatatcgatgaaagagacctctggcagcagtgtggagaatagatagaggagaaaaaaactaatctgagaagccagttaggaggcttttcaatcactagttcaggtttcaatctacatgttacttccttgagaagcattgtttgacagacacccttctccccccatccagccatcccccaagtctgatttctgccactgccttctacaaagcacaacctgtaattcagttcatgtgtgaagttcttgatattcacaatattgatgaacaaccaagacctctgactgattctcaccgggtaaaattcaccaaagagataaaaggtctgaaggttgaagtgactcattgtggaacaatgagacggaaataccgtgtttgtaatgtaacaagaaggcctgccagtcatcaaacctttcccttacagctagaaaatggccaaactgtggagagaacagtagctcagtatttcagagaaaagtacactcttcagttgaagtacccacaccttccctgtctgcaagtggggcaggagcagaaacatacctacctgccgctggaagtctgtaatattgtggcaggacaacgatgtattaagaaactaacagacaatcagacttcaactatgatcaaggcaactgcaagatctgcaccagatagacaagaggaaattagcagattggtaagaagtgcaaattatgaaacagatccatttgttcaggagtttcaatttaaagttcgagatgaaatggctcatgtaaccggacgtgtacttccagcacctatgctccagtatggaggacggaatcggacagtggcaacaccaagccatggagtatgggatatgcgaggaaaacagttccacacaggagttgaaatcaaaatgtgggctatagcttgttttgccacacagaggcagtgcagagaagaaattttaaaaggtttcacagaccaactgcgtaagatttccaaggatgcagggatgcccatccagggccagccatgcttctgcaaatacgcacagggcgcagacagtgtagagcccatgttccggcacctcaagaatacatactctgggttacagctcattattgtcatcctgccaggaaagacaccagtgtatgcggaggtgaaacgtgtaggagatacacttttgggtatggctacacagtgtgttcaagtgaagaatgtaataaaaacatctcctcaaactctctcaaatttgtgcctaaagattaatgttaaacttggcgggataaataatattcttgtacctcatcaaagaccttctgtgttccagcaaccagtgatctttttgggagcagatgtcactcatccacctgctggtgatgggaaaaaaccttctattgctgctgttgtaggtagtatggatgcccacccaagcagatactgtgccacagtaagagttcagagacccaggcaggagatcatccaggacttggcatccatggtccgagaacttctcattcaattttataagtcaactcggttcaaacctactcgtatcatcttttatcgggatggtgtttcagagggacagtttagacaggtattatattatgagctactagcaattcgagaagcctgtatcagtttggagaaagactatcaacctggaataacctatatcgtagtacagaagagacatcacactcgactattttgtgctgataggacagaaagggtcggaagaagtggcaatatcccagctggaacgaccgttgatacagacattacacatccgtatgagtttgatttttacctctgtagccatgctggaatacagggtaccagccgtccttcacactaccatgttttatgggatgataactgctttactgcagatgaacttcagctgctaacttaccagctctgccacacttatgtacgctgtacacgatctgtttctatacctgcaccagcgtattatgctcacctggtagcattcagagccagatatcatcttgtggacaaagaacatgacagtgctgaaggaagccacgtttcaggacagagcaatgggcgagatccacaagctcttgccaaggctgtacagattcaccaagataccttacgcacaatgtactttgcttaagtccaaggaagaactgaaagatgcgtcgacataacgtatgttttgagtgagttgattgagtagggacacctccagccatacagaagccagtgctgtgtggatgtctgcttcttatgttgatagaaggaaattgtttacttcatcgaggaacgcagcaccattatgcaatatgaaaccagccagctgctttttgtgcggtctcctgtaggaagtatcgcaattgttttgttttcacttcttatagtctaacccttttaatgcctttacctcaagttgcttggcagcacaactatctttgcaaaaaaaaaaaagtaaagaaaaagtaaatgatggtttaaaaacacacacctatacgaataatcaaaatgattgttcacaactatgtgtgcaaaaaaattaatgtgtgttcatatattcttgtaaaaggagtctgtgtatttttaaaatatatacatgtatatttcaaaagcatatatatctgaatctagataatagatatatatgtgtctgtgtatatattttgtagttcattccaatggggagctttctttccctttttttcttcccttactaccacctttattttcctctctaccttccttgccttcttctacatttttttcattaatgctatcagtgacattcagatgttcatatgaatgattcatttgaatgtgaagcatggcaaattgtaggtttctattttattttgcacaccttattacctgtcttctatctcatacacagttctgagtcctcaactctttatactgcattttgtatgagtgtgtgtctctccctcatgctctgaacttatatttgccatttgtgcaatgtgtacataagcagtagcaacccaaatgattccttttctttagtgagtttgttgaagttgctataaatataaaaccttgtcagaagttgtcactttttctctctgataagcgttatgtaattctaaaacctcctgtttctatgagttacacatgaaaatcccttaaatcttttataaatggtaaatattttgaaagattggaactctgtagggttgaggcctctgaaattgtggggggggggagagaaagagagagagaagggattgttgtggaggggtgcattttgttttttgctagtttacttgctgcctctcataccttaatgtgattttcatatatatatatttttatatatatgtatgtgtgtatatataaacatatatgtatgtgttttgaagtacagcttccttttcttttatatttattagaatagtgctttaataattatagaactgtattggcaacatcttttatagaaatataatcatgcttattttaagaaccgacaacatgtttttgctatcttttagtgcaataagcagttttaaaggacagttgtgtctgtttgacatctttacaatggatagtaggaaaaacaggcaccttcattattttaaaagggcaaagtaatccagccttaatttcagaaggaaagtttcgtaattttcaattttaatgcatgtcttttaaaatttataatgaaaacgaaggaagtaaaattattgaaatgagtctgaccttgaatatcagaaataaagttgaactttgatttagtgaagagcttaagatttaaaagatttttaaattatttgaaaatagatcatgtttgttgaagaatcatacgggcaaagtacccattttacttactaaaatgaatcaggaatatacagaatggtatttttaaaagatttgtctgctgatttatcactagtgtaactttcttttcataattaaggtgatggtgacaaaggaatttaagacattgatcattttaatgagttaaaatactgaaatgtgaggaaaactttttacggaacttttgttttattgatttcactttaagatacttaaaaagtactattaatctttcaaaaccaagtttatcagtaatattggagtcaggggagctttgcactttgtaactcataaaaattgcatttgagggttttttgttttgttttgttttttaacactggttcaaagtataggtattacagatcatttccagtgggcattggtgttagcctttcagaattccatctgcatatgaaaactaatggatttagacctttagtttttctcacacctgtaatccactattattgccaatttactgtattttgagcctaaaatctgagcccatgtcctccaacaggcatgaagtcttttgtccctttgccagaaaactaaaaaagtactgtattttgtatgattattattttgaagtatctgaaatgcaatttacaacactgtttcaaagcactttacataagataatatttgtatagtatatacattttttttcttcaagccttctctcatcttctccaaaaaaattcttttaaaatgtgtttgggttttttgtttgtttaatttttgttttgtcttggtttgtttcttgagacagggtctcactgtgtggcccagactggtttcaaacccagaggctcatgtaatcctcccacctgagccttcccagtagctgggactacaggtatgcaccacacctggctgtttttttatattgaagtttcatgaatatagtcaagaacataggaaagaaaagaaaatagtatatcctaaatgtaaaaacttggtttatgcttgcttaatataaataaaaccatcttcctttgtctgtggcatctgtacatattcatgtgagagactttagggagcaactgtggataccatgtccctgtttactactttacctaattttcagttacttaggctcacattggctaaagtgaagcccttaatttaaatctatttggaaggacttttttaagaggagaaatattttttctaaaatataaagttttaccttttgaatgatttattttttagagtgctcttaaattattcagcattgctggtttaagattcttaacttggaagaatatgtctagtaaatttctattttgcttactaataagttggtataccaaacttaattataagaaacctgtgctttgaattttaagatataagactaagtggcagtcacctcttgaaaactgttctagttatttttgcactctggatagaattcctaatcttttctgtttaaaaaaaaaaaaaaacatgaaactcacagtgacgtt
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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