2024-04-19 20:53:25, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_021554754 5913 bp mRNA linear VRT 05-NOV-2019 DEFINITION PREDICTED: Lonchura striata domestica argonaute RISC component 4 (AGO4), transcript variant X3, mRNA. ACCESSION XM_021554754 VERSION XM_021554754.2 DBLINK BioProject: PRJNA391487 KEYWORDS RefSeq. SOURCE Lonchura striata domestica (Bengalese finch) ORGANISM Lonchura striata domestica Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passeroidea; Estrildidae; Estrildinae; Lonchura. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_042588.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Nov 5, 2019 this sequence version replaced XM_021554754.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Lonchura striata domestica Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5913 /organism="Lonchura striata domestica" /mol_type="mRNA" /isolate="Mets1" /sub_species="domestica" /db_xref="taxon:299123" /chromosome="23" /sex="male" /tissue_type="blood" /dev_stage="adult" gene 1..5913 /gene="AGO4" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 18 ESTs, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns" /db_xref="GeneID:110484233" CDS 91..2364 /gene="AGO4" /codon_start=1 /product="protein argonaute-4 isoform X2" /protein_id="XP_021410429.1" /db_xref="GeneID:110484233" /translation="
MEVTLPGEGKDQTFKVSIQWVSVVSLQMLLEALAGHLNEVPEDSVQALDVITRHLPSMRYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWNMMLNIDVSATAFYRAQPIIEFMCEVLDIQNISEQSKPLTDSQRVKFTKEIRGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLENGQAMECTVAQYFKQKYSLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLVKSNSMVGGPDPYLKEFGIVVHNEMTELTGRVLPAPMLQYGGRNKTVATPNQGVWDMRGKQFYAGIEIKVWAVACFAPQKQCREDLLKSFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFKHLKLTYVGLQLIVVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINAKLGGINNVLVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDGHPSRYCATVRVQTSRQETSQELLYSQEVIQDLTNMVRELLIQFYKSTRFKPTRIIYYRGGVSEGQMKQVAWPELIAIRKACISLEEDYRPGITYIVVQKRHHTRLFCADKTERVGKSGNVPAGTTVDSTITHPSEFDFYLCSHAGIQGTSRPSHYQVLWDDNCFTADELQLLTYQLCHTYVRCTRSVSIPAPAYYARLVAFRARYHLVDKDHDSAEGSHVSGQSNGRDPQALAKAVQIHHDTQHTMYFA"
misc_feature <106..243 /gene="AGO4" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 274..426 /gene="AGO4" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 427..789 /gene="AGO4" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(583..585,628..630,670..672,682..684,736..738, 757..759,763..765) /gene="AGO4" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 928..2235 /gene="AGO4" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1339..1341,1351..1353,1387..1398,1405..1407, 1429..1431,1438..1440,1450..1452,1462..1464) /gene="AGO4" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(1543..1545,1549..1551,1789..1791,2203..2205) /gene="AGO4" /note="active site" /db_xref="CDD:240015" ORIGIN
cttccaggttcagatccccaagattgatgtttatcactatgatgtagatatcaaaccagagaaacgcccccgaagagtcaacaggtggatatggaggttacacttccaggagaggggaaggaccagacatttaaggtttccattcagtgggtgtcagttgtcagccttcagatgctgctggaagctctggcagggcacttgaatgaagttcctgaagattctgtacaggcactggatgtaatcacccggcaccttccctccatgaggtacacccctgtgggtcgctcctttttctcccctcctgaaggttattaccaccccctgggagggggcagggaggtctggtttggcttccaccagtcggtccgtcctgccatgtggaacatgatgctcaacatcgatgtgtcagcgactgctttctatcgtgcccagcctatcattgagttcatgtgcgaggtcttggacatccagaacatcagtgaacaaagcaaacctctgacagactcccagcgtgtcaagtttaccaaagaaatcagaggtctaaaagtagaggtgacccactgtggccagatgaagagaaaataccgagtttgcaatgttacccggcgaccagccagccaccagacgttccctctgcagctggagaatgggcaagccatggagtgcacagtagctcagtattttaagcagaaatacagtctgcagctgaaataccctcacctgccttgtctccaagtgggacaggagcagaagcacacatacctgccactggaggtgtgtaacatcgtggcaggccagaggtgcatcaagaagctgacagacaatcagacctcgaccatgataaaagcaacagccaggtctgctccagacaggcaggaggagatcagcagactagtgaagagtaacagtatggttggtgggcctgatccgtatctgaaggagtttggaattgttgttcataatgaaatgacagagctgacaggcagagttctgccagccccaatgctgcagtatggaggcaggaacaagactgtggccacaccaaaccaaggtgtgtgggacatgagagggaaacagttctatgctggcattgagattaaagtttgggctgttgcctgttttgctcctcaaaaacaatgcagggaagacttgctgaagagtttcacagaccagctgcgcaagatctccaaggacgccggcatgccgatccagggccagccctgcttctgcaagtacgcccagggtgcagacagtgtggagcccatgttcaaacacttaaagctgacttatgttggcctgcagctcatcgtcgtgattctgcctgggaagacgcctgtgtacgctgaagtcaagcgggttggagatactcttctaggcatggccacacagtgtgttcaagtaaagaacgtggtcaaaacctctccacaaacgctgtccaacctgtgtctgaagatcaatgccaagctcggaggaatcaacaatgtgctggtacctcatcaaaggccctcggtgttccagcagccagtgatctttttgggagcagatgtcactcaccctcccgccggggacgggaagaagccgtccatcgcggccgtggtgggcagcatggacgggcaccccagccgctactgcgccacggtgcgcgtgcagacctcgcgccaggagacctcccaggagctgctctacagccaggaggtgatccaggacctgaccaacatggtgcgggagctgttgatccagttctacaaatccactcgtttcaagcccacgaggatcatttactacagagggggagtgtcggaaggacagatgaaacaggttgcttggccagagctgatcgccatccggaaggcctgtattagtttggaagaagattatagacctggaataacctacattgttgtgcagaaaaggcatcacaccaggctgttctgtgctgacaaaactgagagggtgggtaaaagtggcaacgtaccagcaggcactactgtggacagcaccatcacacatccttctgaatttgacttttacctctgtagccatgcaggaattcagggaaccagccggccctcccactaccaggtgttgtgggatgacaactgtttcacagcagacgagctgcagctgctgacgtaccagctgtgccacacgtacgtgcgctgcacccgctccgtctccatccccgcgcccgcctactacgccaggctggtggcctttcgggccaggtaccatcttgtggacaaggatcacgacagcgctgagggcagccacgtgtcggggcagagcaacggccgcgatccgcaggcgctggccaaggctgtgcagatccaccacgacacccagcacaccatgtatttcgcttgagagcacctgggaagatgaggcaaaacaactacccatgcagtcctgaagtgtttggcaatctcctgctctacccagggccgggggatttcggactgcccactaccagcagctccggacagtcgcactgaatctgttcttcactgcaacgtctgatgcaccaacacaattgagccatttgtttcattgttttctgtactagaaatccatagacttgtcttttctgatgcattggactgaatttttacctcaaagcgcaaaggccgatcatcctgaaatttttcaaggagttggcacgaaaggtttctatcaaatcttttgctagctgtggtttttttcagttctcctcatcccatgagctgacggtgactgctgctctgtctccgtgccctgcttcgtgagtatgatgtgatggcaaaatgttttatccagctcgctgtaatccttctgtcgtgtggggccataaatttttttatggagattttagacttcactactgtaaatgccttttaacaaacataactttcacaggtattgcagttttttgtcagttttactaattatctttttaatctctgcagacttgggctgcaaagcaattgcactatactgcgagttaataggtggttcttgttctgtgaatgtgtaatataaccaatagtgatgcctgtcagtagattttaatgataatggttataaataatactgccatggtatcgtaacaagtactgaaccatcatttcccccctctaaaaatgataaaacaaaaaaaaaaaaatttagcttttaggtattttgcaaacttttacaaaagtgcccactttatgctgctgtgtggtttgataaatctaagtgattttaaaacttttttctcatagaaggtttaactttggcaataaatctttgttttttaagccccccaaacagtgtaattttctagctgaggattgtgcatgagtttaaccaacattctcgtgtcgttttctgaacacacaatttggcagtttctgaaacaaattagaaaagacacatttccatgctttttttaaggattatttttaactgttttatattcactgttggtgtcctgtctagaacattttttataagcttggaaactgggtgttccgtgtaggaaaggccaacgtgtgcagttgaaatgtattgtgtggcaggcaacctgaggacttgtaccagcattttgaactgtttttttcctgggaatttgggttgcccacacaactgcatttacggcatgttgaacccgtgtgagtctcaaatgctgattctgtcctagcctagaaattagggtttttaatctgcttggcttttttcagctgcaacctgtaatccagaacagggacctggtttccctggtatattcctgtaatccatgaacgtagtaatttaagactagattccttattgtatacctgagttagtgcagattaaagcttattcctaaactgaggaggagtttaagaagcccaaggattgcactgtggtctctgatacttgtgtggggtttgctgctaagttgtctgctgtcccaaagcttaggaaccagccccctccaaatttcagcaataggaaatgctgtttccttcagtctttaagcttgtaaataaatgaaagtttacatttctaaatgctgttgttttcagttgtaccagagtacactgaacatcttcaaacagttttataacctccttaccagtactatgtctcataaattaagtttaacctcttttcatttctgttaaaaatgggactgaagtgaatcctgctcctggcatgtgccaagacaggtttagattgaaaaaaacaaaaagattcttttacattttttaactttttttttaaagaatacctcacttgtgtaataaaatcaggacatgtgggtgggagactgaccgctgcttttctcagtactcgttcagggagaagacacaaaaaccctttttagagtgaactctgactgacccaacacacacggagaaccttggcaccttgaaaagcacctgagcacctgttggaggtggtaggatccaagatccctgatttgagtttgtgcactaggaatggggctggtttaacaagggtgcataaaaaatgaactttatcaccaattagttgtccagtgccaagcactcctggttgagactgagggaagggagagcctctccttggtttgcctgtgactggatatttgacctcagaccaggtggagcatcagcccctggtgagtcctgggccagcacccgagcggggctggtgtgagcccaccccgggcacagggctggagttttggggggaaagcactgaagttcaggatccaagttgcagcagtgctgccctaggtaggtctgagcccaagtctggaggacttgaggacctgagtgagccctgtgggcctgagtgactcgttctgcatgtgtcaatcaatgggaagatgtgcattctgtagctgtagttttagggtgttttgatttttgttttttgggtttttttttataaataaagcctgttggccactgtttagctctgtggtgtgaaagattttaaatgtagcaaagttcaaagagttggggaagggggtggttgatatatattaaaaaatattttaaaaaagggtggggggagggggcagaaatcctgttttccacctggttctgcttgctttgtccctgctgagttctgaagaagctctggcaatccctagttagcctgtctccagcagtctggctcttgtattgctgtgagttccccgggtgcccggagctccatccgaagggcactgcagaggtgggtgcacgggctgtgccgtgtccagcctcgcttggcccttcggatggggcagggccctggctcagagctggcatctgacagccccgacccctttgtggatgtgctgtaggagttttcttgctcaatagcgagggagtgactctgctttcattttcagaaggcagggccagagggcattggctccatcccgatcctgatccactgcaaggctctttccctgtgcactggaggaaagatcttgcactaaatatcacttacagattttcttagaccttgctattgacattttcatatttctatgtctagaggctgcaacttcaatgtaaaatgtttgcatttgttcagtttgacttctgatgtaattttttggtttctatattgttagacttgtaatgtttcaaatggtattttattaactttggactggatgtatgtctctagcaatacgaggtactttctaaactgtcctggggctcacagccccgtgtcgagataagatgctggtcgtgtacaattgcattgtattttttttttttttagcctgcagggatattttgtgttcatgtgtccaaaaataataataataataataaaaaaaaaattggcattctcgtgccaaatgttctgtttttcattattgctgtccaataaatgcaatgtacagagtgagcaaccaatactgttgcctgtatacaaatgtcttaaactatttaacttttaattaaaacttgtacagaatgtgtc
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]