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2024-04-19 08:22:29, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_021485274            4598 bp    mRNA    linear   INV 17-JUN-2017
DEFINITION  PREDICTED: Mizuhopecten yessoensis zinc finger protein OZF-like
            (LOC110441949), mRNA.
ACCESSION   XM_021485274
VERSION     XM_021485274.1
DBLINK      BioProject: PRJNA390633
KEYWORDS    RefSeq.
SOURCE      Mizuhopecten yessoensis (Yesso scallop)
  ORGANISM  Mizuhopecten yessoensis
            Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Bivalvia;
            Autobranchia; Pteriomorphia; Pectinida; Pectinoidea; Pectinidae;
            Mizuhopecten.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_018479986.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Version          :: Mizuhopecten yessoensis Annotation
                                           Release 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 7.4
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4598
                     /organism="Mizuhopecten yessoensis"
                     /mol_type="mRNA"
                     /strain="PY_sf001"
                     /db_xref="taxon:6573"
                     /chromosome="Unknown"
                     /sex="male"
                     /tissue_type="whole organism"
     gene            1..4598
                     /gene="LOC110441949"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 16 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:110441949"
     CDS             87..1508
                     /gene="LOC110441949"
                     /codon_start=1
                     /product="zinc finger protein OZF-like"
                     /protein_id="XP_021340949.1"
                     /db_xref="GeneID:110441949"
                     /translation="
MKRTYKQTKIEAENNKVQNAESFVKIETDDSINRETCVAEIAPGEVSHTEAIVYESSIKIEPDNSGETSVADKEPGDGSHSNSIDTESAVKIETDNSSHRETAVAEPSVRCVTLILPENANVALVPNIPAKKHNICEVCGKWFSKSINLKRHKRLHHSKVPNTTSDKHTCTVCGKDFDRKYLLQNHMHKHTSPEQTFTCAICDKSFTEKRDLISHVKTHGDENVQKGKSSNYQNKTWEFKRKLEKKTKNTRRKRFTCDICLKDFHSKLYLQNHQSVHSDVRMYSCVFCDKTFTMPDGLNQHLQVHSSNTPFQCSDCGKSFKRQSHLNTHANIHSGQKTQRCDICDGMFSDLSGLLRHRVVHTGEKPFKCDVCRKSYGRMGTLQRHMIIHSGEKPFKCEVCSKGFSDKSCLNRHFMIHTGDVPYKCGLCTKAFIHASHLSRHLKTHNKVEHACEHCDRKYTSKVCLTKHMKSHE"
     misc_feature    492..554
                     /gene="LOC110441949"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    501..1478
                     /gene="LOC110441949"
                     /note="FOG: Zn-finger [General function prediction only];
                     Region: COG5048"
                     /db_xref="CDD:227381"
     misc_feature    order(507..509,513..515,519..521,525..530,537..542,
                     549..551,609..611,615..617,627..632,639..644,651..653,
                     696..698,702..704,708..710,714..719,726..731,738..740)
                     /gene="LOC110441949"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    594..656
                     /gene="LOC110441949"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(594..596,603..605,642..644,654..656)
                     /gene="LOC110441949"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    681..743
                     /gene="LOC110441949"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    855..917
                     /gene="LOC110441949"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    939..1001
                     /gene="LOC110441949"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(939..941,948..950,987..989,999..1001)
                     /gene="LOC110441949"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    1023..1085
                     /gene="LOC110441949"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1107..1169
                     /gene="LOC110441949"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1191..1253
                     /gene="LOC110441949"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(1206..1208,1212..1214,1218..1220,1224..1229,
                     1236..1241,1248..1250,1290..1292,1296..1298,1308..1313,
                     1320..1325,1332..1334,1374..1376,1380..1382,1386..1388,
                     1392..1397,1404..1409,1416..1418)
                     /gene="LOC110441949"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    1275..1337
                     /gene="LOC110441949"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(1275..1277,1284..1286,1323..1325,1335..1337)
                     /gene="LOC110441949"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    1359..1421
                     /gene="LOC110441949"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1440..1502
                     /gene="LOC110441949"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(1440..1442,1449..1451,1488..1490,1500..1502)
                     /gene="LOC110441949"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
ORIGIN      
tccggttcctgtaacataactggtgatgattacgtggctgactcctgacattgcaccgtttaaaagaattgtggtaaacgggtaggatgaagagaacatataaacagaccaagattgaagcagagaataacaaggtgcagaatgctgaatcttttgtaaagattgagacagatgacagtataaacagagaaacttgtgtagctgaaatagcaccaggggaggtaagccacactgaagcgatcgtatatgagtcctctatcaaaattgagcctgacaacagtggagagacctctgtagctgataaagaaccaggggacggaagccacagcaattctattgatactgaatctgcagtaaagattgagacagacaacagttcacatagagagactgctgtagccgagccttcagtcagatgtgtgactctcatacttcctgagaatgcaaatgttgccctggttccaaacatccctgcaaagaaacacaacatatgtgaagtatgtgggaagtggttttctaaaagcataaatcttaagcgacacaaacgattacaccacagcaaagtccctaatacaacgtcagacaaacacacctgtactgtttgtgggaaagactttgaccggaaatatttactacagaatcatatgcataaacacactagtccagagcaaacttttacatgtgctatctgtgacaagtcgttcactgaaaagagagatttaatttcacacgtgaaaacacatggcgatgaaaacgttcagaaaggaaagagttcaaattatcaaaacaaaacatgggagttcaaaagaaaactggaaaagaaaactaaaaacacgagaagaaagcgctttacatgtgatatctgtctcaaggactttcatagcaaactttaccttcaaaaccaccagagtgtacattcagatgtgaggatgtactcgtgtgtattctgtgataaaacatttacgatgccagacggactaaaccagcacctccaggtccattctagtaacacaccttttcagtgttcggactgtggtaaatcattcaagcggcagagtcatctaaacacacatgccaatatacattctggacaaaagacacaaagatgcgacatctgtgacgggatgtttagcgacttgagtggcctgttgcgacatcgagtcgtccacacgggcgagaaaccgttcaaatgtgacgtctgccgtaaaagttacggtaggatggggactctacagagacacatgatcatacactcgggagagaaaccgttcaagtgtgaagtctgcagtaagggattctcggataaaagttgcctgaacagacactttatgatacatactggagatgtcccgtataagtgtgggctgtgtacaaaagcatttatccatgcctctcacctcagccgacacctgaaaacacacaataaggtcgagcatgcgtgtgagcactgtgatagaaaatacacaagtaaagtatgcctaacaaaacacatgaaatcccacgaatgatacaacttgttgtaatatagtagtaataataaataaatgggatttgttggtgtgttttttagagccgagttttggctgcaatttttcaatgaaatgtaaatattttttcactttttatggaaaatttctttaattagaaagaaaagtcttgatggtgtttatgatttaaatttttatgcaaaacctttgatgattataagatgtgttaaatttgttctagtctatgaaatttacacttgaaacgtaatgttattgacaatgacagcctttttatgaaattttccagaggcagaaaaattattaaaatcaagtaggacctcactatcatatatatttttgtttccttaaaaaaaaccaccatattttttgatgtagagatgggcattatcaatgcaaatacttgtactcagtattataacttgtacatctagtccagttaaagtttgatatttatgtatatagttaatttctttacattctgttaatgtttatatttgggaggtcgagtggcacactcacttatcaccaagacaatagggatttgattcctgatttggacatgaaaaggagcagggtcatgataatttgtatacccccgtcgaatgacaggacataatatgttatgtacaatagttgttatatatgtactttgcacttctatgaccaagtattaaacaaagcgtagatgaatcgagtcatttcagtacatatataacaactattgtacataggcttacaacttatctgaatcaacatcaatttgtggacaactcgtacacattttacatctttgtgtgcatacccttcactggtcatttggctgatgaaggtgacagagtacataccatactagtcatccaaacgtcacaatgaaacactaattggtcatgtaaagagaacaattccttaattacagtacaggcagtttcaaggacagggccagtctgagagggcttaatgggtagatagatcaagagagaaattccaacattttatcacagtcccaaatacccagatcaagattgacagacacttttatgaaattaaatgttagttttgcattaattcatcaagtttttttgtccatttaggaattgataatttactgtgtgatggttattatcagacatcaatttacaataaccgtttcttgtacttaatttaaacgtgactgttttcagttcaaatttgaacagtttctaaatggaaacacctttttaacaaaatctatagagtaatactcttcgtaaaatcttttaaatctactggtaactttcttcagtgtcagagaggaaaatccatatccactttccttaacgagactgaagaaatgtaggagccagacaatattctgcaaggagttttatgtctccttaagatttgattggataagttatgattttttacttggtcaacagttcagagtccactgtatatttaacttttgttttaaatttcaatattattgaaaatatctatatttcaattttccattaatttgttgaaaaactaaccagactttaacaacagggccctataagctactgcctttaggaggaggtgtggtacatattgagatcataattaatcttaagtatgtataattgttatattttttgcacttaaattctggagtatttttaagtttggttcagtaccactctgtatgtatgtttttcattggcatttctaggtctgttattctattgttttaaagaaatatttttgttatgaaattcgttgaaaaataaaatttgttttcctggcaaaatatacaccaagtatgtgcttttaagaatccctgttccatgaagacaaaactttagagagttccactgtcaggcaaaacagtagagggttccattgtcagacgaaacattagagagttccactgtcagaaaaaacattaaagagttccactgtcggacaaaacaatagagagttccgcagtcagacaaaatgttagagaagagagtgccactaccagacaaaacagtagagttccacagtcagacaaaacagtagagagttccactgtcagacaaaacagtagagagttcacctgtcagaaaaaaaacattaaagagttccactgtcggacaaaacaatagagagttctgcagtcagacaaaatgttagagaagagagtgccactaccagacaaaacagtagagttccacagtcagacaaaacagtagagagttcacctgtcagacaaaacaatagattctagagagttccactttcagacaaaccagtggagagttccgctgtcacacaaaacattagagagttccactgtcagacaaaacggtaaagagttcctctgtcacacaaaacattagagagttccactgtcagataaaacagtagagagttccactgtcagacaaaacttaagagagatccactttagtaatcaccctttagttttgctttggatgtaactgttgtaaaactgggttagggaaattccgctgacaaggtagctcacttgtttggagcatctctataatgatctgaggtccagggttcgattccgagtctagcttcatagtatttttgctcttgacccaccgtgttgattattaatggtcacttatttcatctttattatttttcataacgttcctcaaggtatcggtttcttttcagatatgatatatcaacattgttgtcatgtcggtaaaacaaatcaatttctagcactctaatgctacaggcagtcagaggaaaactaaatttaatttgattgacgaccggatgaaggtaattgaatatttctttaaattggaattgtattaaatctaattgttcacaatacttgtctattttagcaagagcaagtgctctgggttacactttaaatatattaccagactgaaagggaggtaattcttgtatcaattttgtaacttgttacgatcggacaggtctgtgtgagtattgtcggccttcctgttccccctagtcatgcagactgcagcttctacgtcctctctgagatgcaggatcccaatctaactgaccacccaaattttctaataccagacttaaatattttgacatatagatatctggtgtgggccc
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]