2024-04-19 08:22:29, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_021485274 4598 bp mRNA linear INV 17-JUN-2017 DEFINITION PREDICTED: Mizuhopecten yessoensis zinc finger protein OZF-like (LOC110441949), mRNA. ACCESSION XM_021485274 VERSION XM_021485274.1 DBLINK BioProject: PRJNA390633 KEYWORDS RefSeq. SOURCE Mizuhopecten yessoensis (Yesso scallop) ORGANISM Mizuhopecten yessoensis Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Bivalvia; Autobranchia; Pteriomorphia; Pectinida; Pectinoidea; Pectinidae; Mizuhopecten. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_018479986.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Mizuhopecten yessoensis Annotation Release 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4598 /organism="Mizuhopecten yessoensis" /mol_type="mRNA" /strain="PY_sf001" /db_xref="taxon:6573" /chromosome="Unknown" /sex="male" /tissue_type="whole organism" gene 1..4598 /gene="LOC110441949" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 16 samples with support for all annotated introns" /db_xref="GeneID:110441949" CDS 87..1508 /gene="LOC110441949" /codon_start=1 /product="zinc finger protein OZF-like" /protein_id="XP_021340949.1" /db_xref="GeneID:110441949" /translation="
MKRTYKQTKIEAENNKVQNAESFVKIETDDSINRETCVAEIAPGEVSHTEAIVYESSIKIEPDNSGETSVADKEPGDGSHSNSIDTESAVKIETDNSSHRETAVAEPSVRCVTLILPENANVALVPNIPAKKHNICEVCGKWFSKSINLKRHKRLHHSKVPNTTSDKHTCTVCGKDFDRKYLLQNHMHKHTSPEQTFTCAICDKSFTEKRDLISHVKTHGDENVQKGKSSNYQNKTWEFKRKLEKKTKNTRRKRFTCDICLKDFHSKLYLQNHQSVHSDVRMYSCVFCDKTFTMPDGLNQHLQVHSSNTPFQCSDCGKSFKRQSHLNTHANIHSGQKTQRCDICDGMFSDLSGLLRHRVVHTGEKPFKCDVCRKSYGRMGTLQRHMIIHSGEKPFKCEVCSKGFSDKSCLNRHFMIHTGDVPYKCGLCTKAFIHASHLSRHLKTHNKVEHACEHCDRKYTSKVCLTKHMKSHE"
misc_feature 492..554 /gene="LOC110441949" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 501..1478 /gene="LOC110441949" /note="FOG: Zn-finger [General function prediction only]; Region: COG5048" /db_xref="CDD:227381" misc_feature order(507..509,513..515,519..521,525..530,537..542, 549..551,609..611,615..617,627..632,639..644,651..653, 696..698,702..704,708..710,714..719,726..731,738..740) /gene="LOC110441949" /note="putative nucleic acid binding site [nucleotide binding]; other site" /db_xref="CDD:275368" misc_feature 594..656 /gene="LOC110441949" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature order(594..596,603..605,642..644,654..656) /gene="LOC110441949" /note="Zn binding site [ion binding]; other site" /db_xref="CDD:275368" misc_feature 681..743 /gene="LOC110441949" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 855..917 /gene="LOC110441949" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 939..1001 /gene="LOC110441949" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature order(939..941,948..950,987..989,999..1001) /gene="LOC110441949" /note="Zn binding site [ion binding]; other site" /db_xref="CDD:275368" misc_feature 1023..1085 /gene="LOC110441949" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 1107..1169 /gene="LOC110441949" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 1191..1253 /gene="LOC110441949" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature order(1206..1208,1212..1214,1218..1220,1224..1229, 1236..1241,1248..1250,1290..1292,1296..1298,1308..1313, 1320..1325,1332..1334,1374..1376,1380..1382,1386..1388, 1392..1397,1404..1409,1416..1418) /gene="LOC110441949" /note="putative nucleic acid binding site [nucleotide binding]; other site" /db_xref="CDD:275368" misc_feature 1275..1337 /gene="LOC110441949" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature order(1275..1277,1284..1286,1323..1325,1335..1337) /gene="LOC110441949" /note="Zn binding site [ion binding]; other site" /db_xref="CDD:275368" misc_feature 1359..1421 /gene="LOC110441949" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 1440..1502 /gene="LOC110441949" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature order(1440..1442,1449..1451,1488..1490,1500..1502) /gene="LOC110441949" /note="Zn binding site [ion binding]; other site" /db_xref="CDD:275368" ORIGIN
tccggttcctgtaacataactggtgatgattacgtggctgactcctgacattgcaccgtttaaaagaattgtggtaaacgggtaggatgaagagaacatataaacagaccaagattgaagcagagaataacaaggtgcagaatgctgaatcttttgtaaagattgagacagatgacagtataaacagagaaacttgtgtagctgaaatagcaccaggggaggtaagccacactgaagcgatcgtatatgagtcctctatcaaaattgagcctgacaacagtggagagacctctgtagctgataaagaaccaggggacggaagccacagcaattctattgatactgaatctgcagtaaagattgagacagacaacagttcacatagagagactgctgtagccgagccttcagtcagatgtgtgactctcatacttcctgagaatgcaaatgttgccctggttccaaacatccctgcaaagaaacacaacatatgtgaagtatgtgggaagtggttttctaaaagcataaatcttaagcgacacaaacgattacaccacagcaaagtccctaatacaacgtcagacaaacacacctgtactgtttgtgggaaagactttgaccggaaatatttactacagaatcatatgcataaacacactagtccagagcaaacttttacatgtgctatctgtgacaagtcgttcactgaaaagagagatttaatttcacacgtgaaaacacatggcgatgaaaacgttcagaaaggaaagagttcaaattatcaaaacaaaacatgggagttcaaaagaaaactggaaaagaaaactaaaaacacgagaagaaagcgctttacatgtgatatctgtctcaaggactttcatagcaaactttaccttcaaaaccaccagagtgtacattcagatgtgaggatgtactcgtgtgtattctgtgataaaacatttacgatgccagacggactaaaccagcacctccaggtccattctagtaacacaccttttcagtgttcggactgtggtaaatcattcaagcggcagagtcatctaaacacacatgccaatatacattctggacaaaagacacaaagatgcgacatctgtgacgggatgtttagcgacttgagtggcctgttgcgacatcgagtcgtccacacgggcgagaaaccgttcaaatgtgacgtctgccgtaaaagttacggtaggatggggactctacagagacacatgatcatacactcgggagagaaaccgttcaagtgtgaagtctgcagtaagggattctcggataaaagttgcctgaacagacactttatgatacatactggagatgtcccgtataagtgtgggctgtgtacaaaagcatttatccatgcctctcacctcagccgacacctgaaaacacacaataaggtcgagcatgcgtgtgagcactgtgatagaaaatacacaagtaaagtatgcctaacaaaacacatgaaatcccacgaatgatacaacttgttgtaatatagtagtaataataaataaatgggatttgttggtgtgttttttagagccgagttttggctgcaatttttcaatgaaatgtaaatattttttcactttttatggaaaatttctttaattagaaagaaaagtcttgatggtgtttatgatttaaatttttatgcaaaacctttgatgattataagatgtgttaaatttgttctagtctatgaaatttacacttgaaacgtaatgttattgacaatgacagcctttttatgaaattttccagaggcagaaaaattattaaaatcaagtaggacctcactatcatatatatttttgtttccttaaaaaaaaccaccatattttttgatgtagagatgggcattatcaatgcaaatacttgtactcagtattataacttgtacatctagtccagttaaagtttgatatttatgtatatagttaatttctttacattctgttaatgtttatatttgggaggtcgagtggcacactcacttatcaccaagacaatagggatttgattcctgatttggacatgaaaaggagcagggtcatgataatttgtatacccccgtcgaatgacaggacataatatgttatgtacaatagttgttatatatgtactttgcacttctatgaccaagtattaaacaaagcgtagatgaatcgagtcatttcagtacatatataacaactattgtacataggcttacaacttatctgaatcaacatcaatttgtggacaactcgtacacattttacatctttgtgtgcatacccttcactggtcatttggctgatgaaggtgacagagtacataccatactagtcatccaaacgtcacaatgaaacactaattggtcatgtaaagagaacaattccttaattacagtacaggcagtttcaaggacagggccagtctgagagggcttaatgggtagatagatcaagagagaaattccaacattttatcacagtcccaaatacccagatcaagattgacagacacttttatgaaattaaatgttagttttgcattaattcatcaagtttttttgtccatttaggaattgataatttactgtgtgatggttattatcagacatcaatttacaataaccgtttcttgtacttaatttaaacgtgactgttttcagttcaaatttgaacagtttctaaatggaaacacctttttaacaaaatctatagagtaatactcttcgtaaaatcttttaaatctactggtaactttcttcagtgtcagagaggaaaatccatatccactttccttaacgagactgaagaaatgtaggagccagacaatattctgcaaggagttttatgtctccttaagatttgattggataagttatgattttttacttggtcaacagttcagagtccactgtatatttaacttttgttttaaatttcaatattattgaaaatatctatatttcaattttccattaatttgttgaaaaactaaccagactttaacaacagggccctataagctactgcctttaggaggaggtgtggtacatattgagatcataattaatcttaagtatgtataattgttatattttttgcacttaaattctggagtatttttaagtttggttcagtaccactctgtatgtatgtttttcattggcatttctaggtctgttattctattgttttaaagaaatatttttgttatgaaattcgttgaaaaataaaatttgttttcctggcaaaatatacaccaagtatgtgcttttaagaatccctgttccatgaagacaaaactttagagagttccactgtcaggcaaaacagtagagggttccattgtcagacgaaacattagagagttccactgtcagaaaaaacattaaagagttccactgtcggacaaaacaatagagagttccgcagtcagacaaaatgttagagaagagagtgccactaccagacaaaacagtagagttccacagtcagacaaaacagtagagagttccactgtcagacaaaacagtagagagttcacctgtcagaaaaaaaacattaaagagttccactgtcggacaaaacaatagagagttctgcagtcagacaaaatgttagagaagagagtgccactaccagacaaaacagtagagttccacagtcagacaaaacagtagagagttcacctgtcagacaaaacaatagattctagagagttccactttcagacaaaccagtggagagttccgctgtcacacaaaacattagagagttccactgtcagacaaaacggtaaagagttcctctgtcacacaaaacattagagagttccactgtcagataaaacagtagagagttccactgtcagacaaaacttaagagagatccactttagtaatcaccctttagttttgctttggatgtaactgttgtaaaactgggttagggaaattccgctgacaaggtagctcacttgtttggagcatctctataatgatctgaggtccagggttcgattccgagtctagcttcatagtatttttgctcttgacccaccgtgttgattattaatggtcacttatttcatctttattatttttcataacgttcctcaaggtatcggtttcttttcagatatgatatatcaacattgttgtcatgtcggtaaaacaaatcaatttctagcactctaatgctacaggcagtcagaggaaaactaaatttaatttgattgacgaccggatgaaggtaattgaatatttctttaaattggaattgtattaaatctaattgttcacaatacttgtctattttagcaagagcaagtgctctgggttacactttaaatatattaccagactgaaagggaggtaattcttgtatcaattttgtaacttgttacgatcggacaggtctgtgtgagtattgtcggccttcctgttccccctagtcatgcagactgcagcttctacgtcctctctgagatgcaggatcccaatctaactgaccacccaaattttctaataccagacttaaatattttgacatatagatatctggtgtgggccc
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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