GGRNA ver.2 Home | Help | Advanced search    Previous release (v1)

2024-03-28 23:01:11, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_021235493            2573 bp    mRNA    linear   ROD 14-APR-2021
DEFINITION  PREDICTED: Mesocricetus auratus protein argonaute-1 (LOC101838170),
            transcript variant X6, mRNA.
ACCESSION   XM_021235493
VERSION     XM_021235493.2
DBLINK      BioProject: PRJNA719779
KEYWORDS    RefSeq.
SOURCE      Mesocricetus auratus (golden hamster)
  ORGANISM  Mesocricetus auratus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Cricetidae; Cricetinae; Mesocricetus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_024429197.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Apr 14, 2021 this sequence version replaced XM_021235493.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Mesocricetus auratus Annotation
                                           Release 103
            Annotation Version          :: 103
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.6
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2573
                     /organism="Mesocricetus auratus"
                     /mol_type="mRNA"
                     /isolate="SY011"
                     /db_xref="taxon:10036"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="liver"
                     /dev_stage="adult"
     gene            1..2573
                     /gene="LOC101838170"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 11 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:101838170"
     CDS             157..2277
                     /gene="LOC101838170"
                     /codon_start=1
                     /product="protein argonaute-1 isoform X6"
                     /protein_id="XP_021091152.1"
                     /db_xref="GeneID:101838170"
                     /translation="
MPHRVGACARGTSSLPVPARYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWKMMLNIDVSATAFYKAQPVIEFMCEVLDIRNIDEQPKPLTDSQRVRFTKEIKGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLESGQTVECTVAQYFKQKYNLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLMKNASYNLDPYIQEFGIKVKDDMTEVTGRVLPAPILQYGGRNRAIATPNQGVWDMRGKQFYNGIEIKVWAIACFAPQKQCREEVLKNFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINVKLGGINNILVPHQRSAVFQQPVIFLGADVTHPPAGDGKKPSITAVVGSMDAHPSRYCATVRVQRPRQEIIEDLSYMVRELLIQFYKSTRFKPTRIIFYRDGVPEGQLPQILHYELLAIRDACIKLEKDYQPGITYIVVQKRHHTRLFCADKNERIGKSGNIPAGTTVDTNITHPFEFDFYLCSHAGIQGTSRPSHYYVLWDDNRFTADELQILTYQLCHTYVRCTRSVSIPAPAYYARLVAFRARYHLVDKEHDSGEGSHISGQSNGRDPQALAKAVQVHQDTLRTMYFA"
     misc_feature    223..375
                     /gene="LOC101838170"
                     /note="Argonaute linker 1 domain; Region: ArgoL1;
                     pfam08699"
                     /db_xref="CDD:430160"
     misc_feature    376..738
                     /gene="LOC101838170"
                     /note="PAZ domain, argonaute_like subfamily. Argonaute is
                     part of the RNA-induced silencing complex (RISC), and is
                     an endonuclease that plays a key role in the RNA
                     interference pathway. The PAZ domain has been named after
                     the proteins Piwi,Argonaut, and Zwille; Region:
                     PAZ_argonaute_like; cd02846"
                     /db_xref="CDD:239212"
     misc_feature    order(532..534,577..579,619..621,631..633,685..687,
                     706..708,712..714)
                     /gene="LOC101838170"
                     /note="nucleic acid-binding interface [nucleotide
                     binding]; other site"
                     /db_xref="CDD:239212"
     misc_feature    871..2148
                     /gene="LOC101838170"
                     /note="PIWI domain, Argonaute-like subfamily. Argonaute is
                     the central component of the RNA-induced silencing complex
                     (RISC) and related complexes. The PIWI domain is the
                     C-terminal portion of Argonaute and consists of two
                     subdomains, one of which provides the...; Region:
                     Piwi_ago-like; cd04657"
                     /db_xref="CDD:240015"
     misc_feature    order(1282..1284,1294..1296,1330..1341,1348..1350,
                     1372..1374,1381..1383,1393..1395,1405..1407)
                     /gene="LOC101838170"
                     /note="5' RNA guide strand anchoring site [active]"
                     /db_xref="CDD:240015"
     misc_feature    order(1486..1488,1492..1494,1702..1704,2116..2118)
                     /gene="LOC101838170"
                     /note="active site"
                     /db_xref="CDD:240015"
ORIGIN      
aggtctccatcaagtggctagccatcgtgagctggcgtatgctacatgaagccctggtcagtggccagatccctgtgcccttggagtctgtgcaagccctggatgtggccatgaggcacctggcatccatgaggccagggctcctccgtgcccaggatgcctcacagagtgggggcctgtgcccgagggaccagttctctgcctgtccctgccaggtacacccctgtgggccgctccttcttctcaccgcctgagggctactaccacccgctggggggtgggcgcgaggtctggttcggctttcaccagtctgtgcgccctgccatgtggaagatgatgctcaacattgatgtctcagctactgccttctacaaagcacagccagtgattgagtttatgtgtgaggtcctggacatcaggaacatagatgaacagcccaagcccctcacagattcccagcgtgttcgctttaccaaggagataaaaggcctgaaggtggaggtgacccactgtggacagatgaagaggaaataccgcgtgtgtaatgttacccgacgccctgctagtcatcagacgtttcccttgcagctagagagtggacagactgtggagtgtaccgtggcacagtatttcaagcagaaatataaccttcagctcaagtatccccacctgccctgcctacaagttgggcaagaacagaagcatacctatttgcccctcgaggtctgtaacattgtggctgggcagcggtgcattaagaagttgactgacaaccagacctcaaccatgataaaggctacagctaggtcggccccagacagacaggaggagatcagtcgcctgatgaagaatgccagctacaacttagatccctacatccaggaatttggaatcaaagtgaaggatgacatgacggaggtgaccgggcgagtgctgccggcgcccatcttgcaatatggcggccggaaccgggccattgctacacccaaccaaggtgtctgggacatgcgtgggaagcaattctacaatggcattgagatcaaagtctgggccatcgcctgcttcgcaccccaaaagcaatgtcgagaagaggtgctcaagaacttcacagaccagctgcggaagatttccaaggatgcagggatgcccatccagggtcagccttgtttctgcaaatatgcgcagggagcagatagtgtggagcccatgttccggcatctaaagaatacatattcaggactgcagctcattatcgtcatcctgccagggaagacgcctgtgtatgctgaagtgaaacgtgttggagatacactcttgggaatggcaacacagtgtgtacaggtgaagaatgtggtcaagacctcacctcagactctgtccaatctctgtctcaagatcaatgtcaagcttggtggcattaacaacatcctagtgccacaccagcgctctgctgtttttcaacagccagtgattttcctgggcgcagatgttacacaccccccagccggggatgggaagaagccgtctatcacagcggtggtaggcagtatggatgcacaccccagccgatactgtgctactgtgcgtgtgcaacgcccacggcaggagatcattgaagacttgtcctatatggtgcgtgagctgctcatccagttctacaagtccacccgcttcaagcctacccgcatcatcttctaccgagatggggtccctgagggccagctaccccagatccttcactatgagctgcttgccattcgagatgcctgcatcaaactggaaaaagactaccagcctgggatcacttacattgtggtgcaaaaacgtcatcatacccgccttttttgtgctgacaagaatgagcgaattgggaagagtggtaacatccccgctgggaccactgtggacaccaacatcactcacccatttgagtttgacttctatctgtgcagtcatgcaggcatccagggtaccagccgaccatcccattactatgtcctttgggatgacaaccgtttcacagcagatgaactccagatcttgacataccagctgtgccacacttatgtacgatgcacacgttctgtctctatcccagcacctgcctactatgcccgattggtggctttccgggcacgataccacctggtggacaaggagcatgacagtggagagggaagccacatatcggggcagagcaatgggcgagaccctcaggccctggccaaagctgtgcaggttcaccaggatacgctacgcaccatgtacttcgcttgaaggcagaatgctgttacctcactggagagaagaaagctttccaagccctgggagctgtaccacccaaatccagaggaaccaaggaagagggaggtggggtcgggagtataagaggccttgtttctgtctacagaggggatataagggtgggaagagggccagcaagacagactaccagccagaaatctctgatagaaacctcatgtcctctaccctctccccatcttgtcatatccgaccccactggaccaaaatgggcagcactagtgcccaccatacacacagttgtctcatgt
//

by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]