2024-04-27 00:33:04, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_021201863 3913 bp mRNA linear ROD 18-JUN-2019 DEFINITION PREDICTED: Mus pahari NRDE-2, necessary for RNA interference, domain containing (Nrde2), transcript variant X1, mRNA. ACCESSION XM_021201863 VERSION XM_021201863.2 DBLINK BioProject: PRJNA387191 KEYWORDS RefSeq. SOURCE Mus pahari (shrew mouse) ORGANISM Mus pahari Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Coelomys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_034596.1) annotated using gene prediction method: Gnomon, supported by mRNA evidence. Also see: Documentation of NCBI's Annotation Process On Jun 18, 2019 this sequence version replaced XM_021201863.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Mus pahari Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3913 /organism="Mus pahari" /mol_type="mRNA" /db_xref="taxon:10093" /chromosome="7" /sex="female" /tissue_type="tail" gene 1..3913 /gene="Nrde2" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 mRNAs, 4 Proteins, and 97% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns" /db_xref="GeneID:110324358" CDS 243..3752 /gene="Nrde2" /codon_start=1 /product="protein NRDE2 homolog isoform X1" /protein_id="XP_021057522.1" /db_xref="GeneID:110324358" /translation="
MALFPAFADVSEASGDGASRKELDWLSNPSFRVGNLTSLSRQTEEVTALASEGSPPPRYLFNRSPLKSEPPGESATSEKLTQISRKKKKEKKKKRKHQHPKKSKRRREQSSSSGSESDTEAGKDRASRSIRDGQKEAEKPCQGSNAAAAAAGQRSIWLEDIHDLTDVFRTDNKPDPANWEYKSLYRGDIARYKRKGDSCLGINPKKQCISWEGASATKKHSHRHLERYFTKKNVGLMRMEGIAVCSNPEPPSSEPVTFIPVKDSAEAATPVTSWLNPLGIYDQSTTQWLHGQGPAEQDSKQPDSQQDRECAALKARVEEFNRRVRENPRDTQLWMAFVDFQDEVMRSPGIYALGEGEQEKHRKSLKLLLEKKLAVLERAIESNPGSVELKLAKLQLCSEFWEPSALAKEWQKLLFLHPNNTSLWQRYLSFCQSQFGTFSVSKLHSLYGKCLSTLSAVKDGSMLSHPVLPGTEEAMFGLFLQQCHFLRQAGHSEKVISLFQAMVDFTFFKPDSVKELPTKVQVEFFEPFWDSGEPRVGEKGARGWRAWMHQQERGGWVLVTPDEDDEEPEEEDQEIKDKTLPRWQIWLAAERSRDQRHWRPWRPDKTKKQTEEDCEDPERQVLFDDIGQSLIRLSSPGLQFQLIEAFLQFLGVPSGFLPPASCLYLAMDESSIFENELYDEKPLTYFNPSFSGISCVGYMEQLGCPRWTKGHNREGEEFVRNVFHLVLPLFSGKQKSQLCLSWLRYEIAKVIWCLHTKKKRLKSQGKNCKKLAKNLLKEPENRNNFCLWKQYAHLEWLLGNTEDARKVFDTALSMAGSSELKDRELCELSLLYAELEMELSPDLRGATTGRAVHILTRLTESSPYGAYTGQVSSTQILKARKAYEHALQDCLGQGCASSPAPAEALDCLGSLVRCFMLFQYLTVGIDAAVQIYGQVFSKLKGSALLEGPGSEDSTSSQSLTSVLEAVTMMHTSLLRFHMNVCVYPLAPLRETLSDALKLYPGNQVLWRAYVQIQNKSHSANKTRRFFDTVTRSAKHLEPWLFAIEAEKLRKRLVESVQRVGGREVHATIPETGLTHRIRALFENAIRSDKGNQCPLLWRMYLNFLVSLGNKERSKGVFYKALQSCPWAKVLYMDAMEYFPDELQEILDVMTEKELRVRLPLEELELLLED"
misc_feature 744..1031 /gene="Nrde2" /note="MTR4-interacting domain (MID) found in nuclear exosome regulator NRDE2 and similar proteins; Region: NRDE2_MID; cd22200" /db_xref="CDD:412062" misc_feature order(744..767,774..779,789..794,798..800,804..848, 855..863,867..875,897..905,915..920,924..929,936..956, 981..992,1002..1031) /gene="Nrde2" /note="MTR4 binding site [polypeptide binding]; other site" /db_xref="CDD:412062" misc_feature 1197..2195 /gene="Nrde2" /note="necessary for RNA interference; Region: NRDE-2; pfam08424" /db_xref="CDD:429988" ORIGIN
ccagcgttcagtgaagccggagggcactaactacaaggaaacagttcttcctcgttctcatcctttcccctcctcccctctctaccctttgggtctccgcaccgccttgcccaggggttaagcctcgacgagtgcaggaagaactacatttcccagagtgcctcgcgaattcagcgtcctccaaccagagctctccagacggcgccatttctgtggcaggagtggtggtgcggcctgtgatcatggcgctgttcccggcctttgcggacgtaagtgaggcctccggtgatggggcatccaggaaagagttagattggctgagcaacccaagctttcgtgttggaaatctaacttctctgagccgacaaactgaagaggtcacagcccttgcttctgaagggtcaccaccgccaaggtacttgtttaacaggagtcctctgaagtcagagcccccaggggagagcgccactagtgagaagctcacacagatcagcaggaagaagaagaaggagaaaaagaagaaaaggaagcaccagcaccccaagaaaagcaagaggaggcgtgagcagtcgagcagcagtggctctgagtcggacacagaggctgggaaggacagggcttcccgaagcatcagggatggccagaaggaagctgagaaaccctgtcagggaagcaatgctgctgctgctgctgctggacagcgttccatttggctggaagatattcacgatctgaccgatgtcttcaggacagataacaaaccagatcctgccaactgggagtataaatctctgtatcgtggggacatagcaaggtacaagagaaagggagactcctgccttggtatcaatcctaagaaacagtgtatatcttgggaaggggcttctgcaacaaagaagcactcacacaggcacctggagcgctattttaccaagaagaatgtggggttaatgagaatggagggcattgctgtgtgtagtaaccccgagcctccctcctccgagccagtcacattcatcccagtgaaggactctgctgaggcggctactcctgttacatcatggctgaatcccctggggatttatgatcagtctaccacacagtggttacacggacagggtccagcagagcaagactcaaagcagccagactcacaacaggacagggagtgtgctgctctcaaggctagagtggaagagtttaacagaagggttcgggagaatcctcgggacacgcagctatggatggcgtttgtggatttccaggacgaggtcatgaggagtcctggcatctatgcccttggggaaggagaacaggagaagcacaggaagtccctgaagctcctcctggagaagaagctggctgtgctggagcgggccatcgagagcaacccaggcagcgtggagctgaagctcgccaagctgcagctgtgctcagagttctgggagcctagcgcgctggccaaggagtggcagaagctcctcttcctgcaccccaacaacacaagcctgtggcagcgctatctctccttttgccagagccagtttggtaccttttctgtgtccaaactccacagtctgtatggcaagtgcttgagtaccttgtctgctgttaaagatggcagcatgctatcccaccctgtgttgccgggcactgaggaggccatgtttgggctctttcttcagcagtgccattttctacggcaggctggccactcagagaaggtcatctctttgttccaggccatggttgacttcaccttcttcaagcctgacagtgtgaaagagctgcctactaaagtacaggtggagttctttgagcccttctgggacagcggagagccacgtgttggggagaagggagcccgaggctggcgggcatggatgcaccaacaggagcgcggtggctgggtgcttgtcaccccagatgaggatgacgaggagccagaagaggaagaccaggagataaaagacaagaccctgcccaggtggcagatctggctcgctgctgaacgttctcgagaccagaggcactggcgtccctggcgccctgataagaccaagaagcaaacagaggaagactgtgaggaccctgagagacaggtgctgtttgatgatattgggcaatctttgatcagactttccagcccaggtcttcagttccagctcattgaggcctttctgcagttcttgggcgtgccttctggcttccttcccccagcctcctgcctttatctggccatggatgagagcagcatctttgagaatgaactttatgatgaaaagcccttgacttacttcaacccttccttttcgggcattagctgtgttggctacatggaacagttgggttgccctcgctggaccaaaggtcacaaccgagagggtgaggagtttgtccgcaatgtcttccacctggtgctgcctttgttctcaggcaagcagaagtcccagctctgcctctcctggttacggtacgagattgcaaaggtcatttggtgtctacacactaaaaagaagcgattaaagtctcagggaaagaactgcaaaaaactagccaagaatctccttaaggagccagaaaaccgcaacaacttctgcctctggaagcagtatgcgcacctggaatggttgctgggtaacacagaggatgccagaaaagtgttcgacacagcgctcagcatggccggcagcagcgagctgaaggaccgtgaactctgcgaactcagtctgctctatgctgagctggagatggaactgtcgccggacttgagaggagccaccacaggccgagcggtccacatattaacacggctgacggagagcagtccctacggggcctacactgggcaggtctcgtccacccagattctgaaagctcggaaggcttacgagcacgcgctgcaggactgcctgggccagggctgtgcctccagcccagctcctgccgaggccttggactgcctgggtagcttggtccgatgctttatgctcttccagtatttgactgtgggcattgatgctgctgtgcagatatatggacaggtcttttccaagctgaagggctctgctctcctagaaggccctgggtcagaggacagcaccagctcccagagtttgaccagtgtccttgaggctgtcaccatgatgcacacaagcctgctgcgattccacatgaatgtttgtgtgtaccctctggctccactccgagagaccctctcagatgctttaaagctgtatccgggcaaccaggttctttggagggcttacgtacagattcagaataagtcccacagtgctaacaagaccagaaggttctttgacacagtcactaggtctgccaaacatttggagccttggctgtttgcaattgaagctgagaagctgaggaaaaggctggtggaatctgttcagagggttggcggcagggaggtccatgcaaccatccctgagactggccttacgcatcggatcagagctttgtttgaaaatgcgattcggagcgacaagggcaaccagtgccccctactatggaggatgtatctgaattttttggtttccttaggaaacaaagaaagaagcaaaggcgtgttctacaaggccctccagagctgtccttgggcaaaggtgctatacatggacgccatggagtatttcccagatgagctgcaggagatcctggacgtgatgaccgagaaggagctccgtgtgcgcctgccccttgaggagctggagctattgctggaggattagcgtgcagccaggcctgtgtcagcctgcagagcccagagctgcagctgtgcagggacttgctccactgtcctggtggggattggatgtattgatttacatattatatatgtgatctatatgtacaaactgagtcgtgccagtgataaaccttttgtggttga
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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